IMP: Integrative Multi-species Prediction

Rattus norvegicus

4 genes annotated in rat

pigment biosynthetic process

The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.

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Known genes in the process in ratInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "pigment biosynthetic process"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "pigment biosynthetic process" (in gray)

Name	Description	Probability	Func Analog Organism
Hspd1	heat shock protein 1 (chaperonin)	0.435
Atp5f1	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	0.349
Hmbs	hydroxymethylbilane synthase	0.237
Prdx1	peroxiredoxin 1	0.145
Ppia	peptidylprolyl isomerase A (cyclophilin A)	0.103
Mdh1	malate dehydrogenase 1, NAD (soluble)	0.079
Rbbp7	retinoblastoma binding protein 7	0.071
Rab10	RAB10, member RAS oncogene family	0.067
Rraga	Ras-related GTP binding A	0.058
Rcn2	reticulocalbin 2, EF-hand calcium binding domain	0.055
Pdia3	protein disulfide isomerase family A, member 3	0.050
Slc25a3	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	0.047
Akr1a1	aldo-keto reductase family 1, member A1 (aldehyde reductase)	0.045
Dnaja2	DnaJ (Hsp40) homolog, subfamily A, member 2	0.045
Cyc1	cytochrome c-1	0.038
Gapdh	glyceraldehyde-3-phosphate dehydrogenase	0.032
Morf4l2	mortality factor 4 like 2	0.031
Atp5b	ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide	0.031
Uso1	USO1 homolog, vesicle docking protein (yeast)	0.031
Oaz1	ornithine decarboxylase antizyme 1	0.029
Hprt1	hypoxanthine phosphoribosyltransferase 1	0.028	Human
Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.027
Trap1	TNF receptor-associated protein 1	0.026
Zranb2	zinc finger, RAN-binding domain containing 2	0.025
Cnbp	CCHC-type zinc finger, nucleic acid binding protein	0.024
Slc25a5	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5	0.024	Yeast
Alad	aminolevulinate, delta-, dehydratase	0.024
Apeh	N-acylaminoacyl-peptide hydrolase	0.023
Pgam1	phosphoglycerate mutase 1 (brain)	0.023
Impa1	Inositol (myo)-1(or 4)-monophosphatase 1	0.023
Aldh7a1	aldehyde dehydrogenase 7 family, member A1	0.023
Cse1l	CSE1 chromosome segregation 1-like (yeast)	0.022
Gpx4	glutathione peroxidase 4	0.021
Atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.020
Rabggtb	Rab geranylgeranyltransferase, beta subunit	0.020
Cycs	cytochrome c, somatic	0.019
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	0.019
Bid	BH3 interacting domain death agonist	0.019
Nipsnap1	nipsnap homolog 1 (C. elegans)	0.018
Ndufa4	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	0.018
Ghitm	growth hormone inducible transmembrane protein	0.018
Copb2	coatomer protein complex, subunit beta 2 (beta prime)	0.018
Got1	glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)	0.018
Vdac2	voltage-dependent anion channel 2	0.018
Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.018
Dnajc10	DnaJ (Hsp40) homolog, subfamily C, member 10	0.017
Wdfy1	WD repeat and FYVE domain containing 1	0.016
Oma1	OMA1 homolog, zinc metallopeptidase (S. cerevisiae)	0.016
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	0.016	Yeast
Uqcrc2	ubiquinol cytochrome c reductase core protein 2	0.016
Tst	thiosulfate sulfurtransferase	0.015
Mpst	mercaptopyruvate sulfurtransferase	0.015
Cdc42	cell division cycle 42 (GTP binding protein)	0.015
Irak3	interleukin-1 receptor-associated kinase 3	0.014
Atp5g3	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	0.014
Rps27l	ribosomal protein S27-like	0.014
Plekha1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	0.014
Arl8b	ADP-ribosylation factor-like 8B	0.013
Mosc2	MOCO sulphurase C-terminal domain containing 2	0.013
Gnpnat1	glucosamine-phosphate N-acetyltransferase 1	0.013
Dazap2	DAZ associated protein 2	0.013
Rab1	RAB1, member RAS oncogene family	0.013
Rad23b	RAD23 homolog B (S. cerevisiae)	0.013
Galt	galactose-1-phosphate uridylyltransferase	0.013
Dnajb9	DnaJ (Hsp40) homolog, subfamily B, member 9	0.013
Pop1	processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	0.013
Ube2b	ubiquitin-conjugating enzyme E2B (RAD6 homolog, S. cerevisiae)	0.013
Igf2	insulin-like growth factor 2	0.013
LOC100362108	poly (ADP-ribose) polymerase family, member 10	0.012
Myl1	myosin, light chain 1	0.012
Vps35	vacuolar protein sorting 35 homolog (S. cerevisiae)	0.012
Abr	active BCR-related gene	0.012
Hebp1	heme binding protein 1	0.012
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.012
Hdac6	histone deacetylase 6	0.012
Sephs2	selenophosphate synthetase 2	0.012
Bcat1	branched chain aminotransferase 1, cytosolic	0.012
Dync1i2	dynein cytoplasmic 1 intermediate chain 2	0.012
Naprt1	nicotinate phosphoribosyltransferase domain containing 1	0.012
MGC125239	hypothetical protein LOC686179	0.012
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	0.012
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	0.012
Snap23	synaptosomal-associated protein 23	0.012
Mri1	methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	0.011
Slc17a1	solute carrier family 17 (sodium phosphate), member 1	0.011
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	0.011
Myf6	myogenic factor 6	0.011
Slc7a1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	0.011
Ap1g1	adaptor-related protein complex 1, gamma 1 subunit	0.011
Cfl2	cofilin 2, muscle	0.011
Cltc	clathrin, heavy chain (Hc)	0.011
Slc22a1	solute carrier family 22 (organic cation transporter), member 1	0.011
Cox4i1	cytochrome c oxidase subunit IV isoform 1	0.011
March8	membrane-associated ring finger (C3HC4) 8	0.011
Ahcy	adenosylhomocysteinase	0.011
Smek1	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	0.011
Tmem49	transmembrane protein 49	0.011
Farsb	phenylalanyl-tRNA synthetase, beta subunit	0.011
Akr7a2	aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)	0.011
Pgam2	phosphoglycerate mutase 2 (muscle)	0.011
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	0.011
Ublcp1	ubiquitin-like domain containing CTD phosphatase 1	0.010
Gusb	glucuronidase, beta	0.010
Psmb5	proteasome (prosome, macropain) subunit, beta type 5	0.010
Gamt	guanidinoacetate N-methyltransferase	0.010
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.010
Tsx	testis specific X-linked gene	0.010
Art1	ADP-ribosyltransferase 1	0.010
Actn4	actinin alpha 4	0.010
Mgat2	mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	0.010
Pdp1	pyruvate dehyrogenase phosphatase catalytic subunit 1	0.010
Ppif	peptidylprolyl isomerase F	0.010
Smad2	SMAD family member 2	0.010
Agxt2	alanine-glyoxylate aminotransferase 2	0.010
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	0.010
Muc13	mucin 13, cell surface associated	0.010