IMP: Integrative Multi-species Prediction

Rattus norvegicus

22 genes annotated in rat

Multi-species View

rna processing

GO:0006396

Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

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Known genes in the process in ratInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rna processing"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "rna processing" (in gray)

Name	Description	Probability	Func Analog Organism
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.404
Hnrph1	heterogeneous nuclear ribonucleoprotein H1	0.237	Human
Ddx17	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	0.101
Tra2b	transformer 2 beta homolog (Drosophila)	0.083	Fly
Ccnl1	cyclin L1	0.082
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.081	Fly
Pnn	pinin, desmosome associated protein	0.068
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.065	Yeast
Sfrs2	splicing factor, arginine/serine-rich 2	0.060	Mouse Fly
Rnps1	ribonucleic acid binding protein S1	0.054	Human
Sfrs5	splicing factor, arginine/serine-rich 5	0.050	Fly
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	0.046	Human Mouse Fly
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.045
Ruvbl1	RuvB-like 1 (E. coli)	0.041
Sfrs18	splicing factor, arginine/serine-rich 18	0.040
Cand1	cullin-associated and neddylation-dissociated 1	0.040
Rsrc2	arginine/serine-rich coiled-coil 2	0.039
Npm1	nucleophosmin (nucleolar phosphoprotein B23, numatrin)	0.039
Nxf1	nuclear RNA export factor 1	0.038	Fly
RGD1359529	similar to chromosome 1 open reading frame 63	0.038
Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.037
Sf3a3	splicing factor 3a, subunit 3	0.035
Polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.035
Tardbp	TAR DNA binding protein	0.033
H3f3b	H3 histone, family 3B	0.031
Thoc1	THO complex 1	0.029
Sfrs1	splicing factor, arginine/serine-rich 1	0.029
Rpl19	ribosomal protein L19	0.029
Prpf39	PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)	0.027
Ewsr1	Ewing sarcoma breakpoint region 1	0.025
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.024
Clk1	CDC-like kinase 1	0.023	Human
Sfrs6	splicing factor, arginine/serine-rich 6	0.023	Human
Nup88	nucleoporin 88	0.021
Dhx15	DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.021
Khdrbs1	KH domain containing, RNA binding, signal transduction associated 1	0.020
Arglu1	arginine and glutamate rich 1	0.020
Hist1h1a	histone cluster 1, H1a	0.019
Ube2i	ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)	0.019
Tra2a	transformer 2 alpha homolog (Drosophila)	0.019	Human
Snrpb	small nuclear ribonucleoprotein polypeptides B and B1	0.018	Human
Rpl27a	ribosomal protein L27a	0.018
Trim28	tripartite motif-containing 28	0.017
Mapre1	microtubule-associated protein, RP/EB family, member 1	0.017
LOC687711	similar to small nuclear ribonucleoprotein D3	0.017
Akap8	A kinase (PRKA) anchor protein 8	0.017
Rps26	ribosomal protein S26	0.016
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	0.016
Rps3	ribosomal protein S3	0.016
Erh	enhancer of rudimentary homolog (Drosophila)	0.016
Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.015	Fly
Sfrs3	splicing factor, arginine/serine-rich 3	0.014
Mcrs1	microspherule protein 1	0.014
LOC686980	similar to arsenate resistance protein 2	0.014
Luc7l2	LUC7-like 2 (S. cerevisiae)	0.014
Ube2c	ubiquitin-conjugating enzyme E2C	0.014
Nono	non-POU domain containing, octamer-binding	0.014
RGD1565775	similar to RIKEN cDNA 2810403A07	0.014
Usp10	ubiquitin specific peptidase 10	0.013
Hmgb2	high mobility group box 2	0.013
LOC684233	similar to Putative RNA-binding protein 15 (RNA-binding motif protein 15) (One-twenty two protein)	0.013
Prmt1	protein arginine methyltransferase 1	0.013
Smn1	survival motor neuron 1	0.013	Human
Rev1	REV1 homolog (S. cerevisiae)	0.013
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	0.013
Yars	tyrosyl-tRNA synthetase	0.013
Dmap1	DNA methyltransferase 1-associated protein 1	0.012
Rnf4	ring finger protein 4	0.012
Fnta	farnesyltransferase, CAAX box, alpha	0.012
Zfc3h1	zinc finger, C3H1-type containing	0.012
Luc7l3	LUC7-like 3 (S. cerevisiae)	0.012	Human
Wbp11	WW domain binding protein 11	0.012
Junb	jun B proto-oncogene	0.012
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.012
Eif4h	eukaryotic translation initiation factor 4H	0.012
Hnrpd	heterogeneous nuclear ribonucleoprotein D	0.012	Fly
Hdac2	histone deacetylase 2	0.012
Eif2b4	eukaryotic translation initiation factor 2B, subunit 4 delta	0.012
Hnrnph3	heterogeneous nuclear ribonucleoprotein H3 (2H9)	0.012
Rplp1	ribosomal protein, large, P1	0.011
Usf2	upstream transcription factor 2, c-fos interacting	0.011
Rbm12b	RNA binding motif protein 12B	0.011
Rbmxrtl	RNA binding motif protein, X chromosome retrogene-like	0.011
Rps28	ribosomal protein S28	0.011
Clk3	CDC-like kinase 3	0.011	Human
LOC681004	similar to GC-rich sequence DNA-binding factor homolog	0.011
Ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.011	Fly
Cct3	chaperonin containing Tcp1, subunit 3 (gamma)	0.011
Eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.011
Morc3	MORC family CW-type zinc finger 3	0.011
Xab2	XPA binding protein 2	0.011
Mtf2	metal response element binding transcription factor 2	0.011
Tmpo	thymopoietin	0.010
Lyn	v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	0.010
Fus	fusion (involved in t(12;16) in malignant liposarcoma) (human)	0.010
LOC362855	P55	0.010
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.010
Cpd	carboxypeptidase D	0.010
Gtf2h4	general transcription factor II H, polypeptide 4	0.010
Prim1	DNA primase, p49 subunit	0.010
Parp2	poly (ADP-ribose) polymerase 2	0.010
Bud13	BUD13 homolog (S. cerevisiae)	0.010