IMP: Integrative Multi-species Prediction

Saccharomyces cerevisiae

11 genes annotated in yeast

nuclear transcribed mrna catabolic process exonucleolytic 3 5

The chemical reactions and pathways resulting in the breakdown of the mRNA transcript body that occurs when the 3' end is not protected by a 3'-poly(A) tail; degradation proceeds in the 3' to 5' direction.

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In addition to gene-name show these genes:

Known genes in the process in yeastInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "nuclear transcribed mrna catabolic process exonucleolytic 3 5 "

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "nuclear transcribed mrna catabolic process exonucleolytic 3 5 " (in gray)

Name	Description	Probability
SKI3	Ski3p	0.978
SKI2	Ski2p	0.942
SKI7	Ski7p	0.825
RRP45	Rrp45p	0.725
NMD2	Nmd2p	0.260
MTR3	Mtr3p	0.214
SKI8	Ski8p	0.193
DIS3	Dis3p	0.176
LRP1	Lrp1p	0.151
UPF3	Upf3p	0.136
CSL4	Csl4p	0.108
MPP6	Mpp6p	0.054
DCP2	Dcp2p	0.053
ENT5	Ent5p	0.044
NUP49	Nup49p	0.043
SHQ1	Shq1p	0.039
SRD1	Srd1p	0.035
ARG8	Arg8p	0.034
YIR035C	hypothetical protein	0.032
YLR264C-A	hypothetical protein	0.031
NUP157	Nup157p	0.031
YAR068W	hypothetical protein	0.030
LEU2	Leu2p	0.030
RRP43	Rrp43p	0.029
YLR162W	hypothetical protein	0.029
HOS2	Hos2p	0.029
SEN54	Sen54p	0.028
URA3	Ura3p	0.028
ARP10	Arp10p	0.026
YOL038C-A	hypothetical protein	0.026
MER1	Mer1p	0.026
RRP40	Rrp40p	0.025
YJR141W	hypothetical protein	0.024
HST1	Hst1p	0.023
YPP1	Ypp1p	0.023
PCT1	Pct1p	0.022
PRS2	Prs2p	0.021
PRP28	Prp28p	0.020
TAE2	Tae2p	0.020
YAR066W	hypothetical protein	0.019
YBT1	Ybt1p	0.019
YPR157W	hypothetical protein	0.019
ATP6	Atp6p	0.019
YLR042C	hypothetical protein	0.018
HO	Hop	0.018
SPP41	Spp41p	0.017
IZH4	Izh4p	0.017
HXT3	Hxt3p	0.017
SPL2	Spl2p	0.017
HPF1	Hpf1p	0.017
YIL151C	hypothetical protein	0.017
YBL029W	hypothetical protein	0.017
YOL013W-A	hypothetical protein	0.016
CCH1	Cch1p	0.016
ZPS1	Zps1p	0.016
FMT1	Fmt1p	0.016
YBR013C	hypothetical protein	0.015
AUA1	Aua1p	0.015
GBP2	Gbp2p	0.015
CHA1	Cha1p	0.015
RRN3	Rrn3p	0.014
CUP1-1	Cup1-1p	0.014
CAR1	Car1p	0.014
ALT2	Alt2p	0.014
BSC1	Bsc1p	0.014
MF(ALPHA)2	Mf(alpha)2p	0.014
THG1	Thg1p	0.014
RNA15	Rna15p	0.013
SCM4	Scm4p	0.013
RTS2	Rts2p	0.013
LEU3	Leu3p	0.013
DIC1	Dic1p	0.013
COS12	Cos12p	0.013
RNH70	Rnh70p	0.013
OPT2	Opt2p	0.013
CPD1	Cpd1p	0.012
GLE1	Gle1p	0.012
YAL037C-A	hypothetical protein	0.012
TIR3	Tir3p	0.012
DST1	Dst1p	0.012
CRP1	Crp1p	0.012
YLR419W	hypothetical protein	0.012
RRN5	Rrn5p	0.012
MFA2	Mfa2p	0.012
BNA4	Bna4p	0.012
PPX1	Ppx1p	0.012
TYE7	Tye7p	0.012
YAL064W	hypothetical protein	0.012
YCR102C	hypothetical protein	0.012
ATR1	Atr1p	0.012
YPR096C	hypothetical protein	0.012
RIO1	Rio1p	0.011
RNP1	Rnp1p	0.011
YLR040C	hypothetical protein	0.011
SWM2	Swm2p	0.011
PTR2	Ptr2p	0.011
TAF8	Taf8p	0.011
CET1	Cet1p	0.011
YGL006W-A	hypothetical protein	0.011
YKR045C	hypothetical protein	0.011
SPS4	Sps4p	0.011
REE1	Ree1p	0.011
MET8	Met8p	0.011
NRG2	Nrg2p	0.011
YJL181W	hypothetical protein	0.011
GYL1	Gyl1p	0.011
SWC7	Swc7p	0.011
RTT105	Rtt105p	0.011
YPL067C	hypothetical protein	0.010
MF(ALPHA)1	Mf(alpha)1p	0.010
SSP1	Ssp1p	0.010
YMR317W	hypothetical protein	0.010
ARR2	Arr2p	0.010
ENA5	Ena5p	0.010
YLR460C	hypothetical protein	0.010
MMP1	Mmp1p	0.010
SPR6	Spr6p	0.010
DIF1	Dif1p	0.010
YNL067W-B	hypothetical protein	0.010
ADH2	Adh2p	0.010
YKR041W	hypothetical protein	0.010
YML003W	hypothetical protein	0.010
UPS3	Ups3p	0.010
SPN1	Spn1p	0.010