IMP: Integrative Multi-species Prediction

Danio rerio

22 genes annotated in zebrafish

Multi-species View

methylation

GO:0032259

The process in which a methyl group is covalently attached to a molecule.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "methylation"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "methylation" (in gray)

Name	Description	Probability	Func Analog Organism
suv39h1a	suppressor of variegation 3-9 homolog 1a	0.851
setdb1a	SET domain, bifurcated 1a	0.770	Fly
whsc1	Wolf-Hirschhorn syndrome candidate 1	0.711
rbb4	retinoblastoma binding protein 4	0.549	Fly
ezh2	enhancer of zeste homolog 2 (Drosophila)	0.471	Human Mouse Worm Fly
ehmt1a	euchromatic histone-lysine N-methyltransferase 1a	0.450	Human Mouse
mpx	myeloid-specific peroxidase	0.440
mll4b	myeloid/lymphoid or mixed-lineage leukemia 4b	0.360	Mouse Fly
setd2	SET domain containing 2	0.359
ehmt2	euchromatic histone-lysine N-methyltransferase 2	0.349
dnmt1	DNA (cytosine-5-)-methyltransferase 1	0.325
mll4a	myeloid/lymphoid or mixed-lineage leukemia 4a	0.314	Mouse Fly
whsc1l1	Wolf-Hirschhorn syndrome candidate 1-like 1	0.288	Human Zebrafish Mouse Fly
pparg	peroxisome proliferator activated receptor gamma	0.287
pax7a	paired box gene 7a	0.284
slc25a32b	solute carrier family 25, member 32b	0.281
prdm9	PR domain containing 9	0.279
prdm4	PR domain containing 4	0.271
smc3	structural maintenance of chromosomes 3	0.255
prdm11	PR domain containing 11	0.251
dnmt7	DNA (cytosine-5-)-methyltransferase 7	0.235
suv420h2	suppressor of variegation 4-20 homolog 2 (Drosophila)	0.233
mll2	myeloid/lymphoid or mixed-lineage leukemia 2	0.230
prdm1b	PR domain containing 1b, with ZNF domain	0.224
ehmt1b	euchromatic histone-lysine N-methyltransferase 1b	0.219
sephs1	selenophosphate synthetase 1	0.216
setd8b	SET domain containing (lysine methyltransferase) 8b	0.213
suv420h1	suppressor of variegation 4-20 homolog 1 (Drosophila)	0.209
mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent)	0.209
mcm7	MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)	0.205
smyd5	SMYD family member 5	0.186
sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.168
smyd2a	SET and MYND domain containing 2a	0.168	Human Zebrafish Mouse
csf1ra	colony stimulating factor 1 receptor, a	0.150
prdm2b	PR domain containing 2, with ZNF domain b	0.147
ube2i	ubiquitin-conjugating enzyme E2I	0.147
suv39h1b	suppressor of variegation 3-9 homolog 1b	0.145	Human Zebrafish Mouse
setdb1b	SET domain, bifurcated 1b	0.142	Mouse Worm Fly
ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.121
org	oogenesis-related gene	0.114
prmt1	protein arginine methyltransferase 1	0.112
nsd1b	nuclear receptor binding SET domain protein 1b	0.112	Human Zebrafish Mouse Fly
prdm8b	PR domain containing 8b	0.112	Mouse
smyd3	SET and MYND domain containing 3	0.105	Zebrafish Mouse
rif1	RAP1 interacting factor homolog (yeast)	0.103
otx1b	orthodenticle homolog 1b	0.088
smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.087
ssrp1a	structure specific recognition protein 1a	0.086
hbbe1.1	hemoglobin beta embryonic-1.1	0.085
dhfr	dihydrofolate reductase	0.082
marcksb	myristoylated alanine rich protein kinase C substrate b	0.081
rcc2	regulator of chromosome condensation 2	0.079
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.078
nasp	nuclear autoantigenic sperm protein (histone-binding)	0.077
setd6	SET domain containing 6	0.074
nanos3	nanos homolog 3	0.070
smyd2b	SET and MYND domain containing 2b	0.069	Zebrafish
si:ch211-51m24.3	si:ch211-51m24.3	0.069
gspt1l	G1 to S phase transition 1, like	0.067	Human
nup50	nucleoporin 50	0.066
dnmt5	DNA (cytosine-5-)-methyltransferase 5	0.061	Human Zebrafish Mouse
lcp1	lymphocyte cytosolic plastin 1	0.061
si:ch211-1n9.7	si:ch211-1n9.7	0.059
prdm14	PR domain containing 14	0.057	Mouse
ilf3a	interleukin enhancer binding factor 3a	0.055
msh2	mutS homolog 2 (E. coli)	0.054
prmt5	protein arginine methyltransferase 5	0.052
mcm5	MCM5 minichromosome maintenance deficient 5 (S. cerevisiae)	0.051
piwil1	piwi-like 1 (Drosophila)	0.049
sh3bp4a	SH3-domain binding protein 4a	0.049
znf711	zinc finger protein 711	0.047
fip1l1	FIP1 like 1 (S. cerevisiae)	0.044
hcfc1a	host cell factor C1a	0.044
hsp90a.1	heat shock protein 90-alpha 1	0.043
sass6	spindle assembly 6 homolog (C. elegans)	0.043
chrna1	cholinergic receptor, nicotinic, alpha polypeptide 1	0.042
rrp12	ribosomal RNA processing 12 homolog (S. cerevisiae)	0.041
slc25a32a	solute carrier family 25, member 32a	0.040
tra2b	transformer 2 beta homolog (Drosophila)	0.038
khsrp	KH-type splicing regulatory protein	0.038
puf60b	poly-U binding splicing factor b	0.038
ahctf1	AT hook containing transcription factor 1	0.038
tdrd1	tudor domain containing 1	0.037
mre11a	meiotic recombination 11 homolog A (S. cerevisiae)	0.037
vasa	vasa homolog	0.037
nr2f2	nuclear receptor subfamily 2, group F, member 2	0.036
nrp1b	neuropilin 1b	0.036
nhp2l1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	0.035
pola1	polymerase (DNA directed), alpha 1	0.033
eef2k	elongation factor-2 kinase	0.033
evx1	even-skipped homeobox 1	0.033
ptpro	protein tyrosine phosphatase, receptor type, O	0.032
abcf2	ATP-binding cassette, sub-family F (GCN20), member 2	0.032
gro2	groucho 2	0.032
rpa1	replication protein A1	0.032
elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.031
med28	mediator complex subunit 28	0.031
optc	opticin	0.030
h1m	linker histone H1M	0.030
st8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.029
smyd1a	SET and MYND domain containing 1a	0.029	Zebrafish
irx3b	iroquois homeobox protein 3b	0.028
cbx5	chromobox homolog 5 (HP1 alpha homolog, Drosophila)	0.028	Fly
cbx2	chromobox homolog 2 (Drosophila Pc class)	0.027
pou3f3a	POU class 3 homeobox 3a	0.027	Zebrafish
mettl3	methyltransferase like 3	0.027	Human
mcm6	MCM6 minichromosome maintenance deficient 6, mitotin (S. cerevisiae)	0.026
prkrir	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.026
cbx1a	chromobox homolog 1a (HP1 beta homolog Drosophila)	0.026	Fly
setd5	SET domain containing 5	0.025
gh1	growth hormone 1	0.025
ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	0.025
cldn7b	claudin 7b	0.025
gins2	GINS complex subunit 2	0.024
spint1a	serine peptidase inhibitor, Kunitz type 1 a	0.024
cbsb	cystathionine-beta-synthase b	0.024
mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)	0.023	Human Mouse Fly
hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase	0.023
dmrt2b	doublesex and mab-3 related transcription factor 2b	0.023
myst2	MYST histone acetyltransferase 2	0.023
ctps	CTP synthase	0.023
olig4	oligodendrocyte transcription factor 4	0.022
birc5a	baculoviral IAP repeat-containing 5a	0.022
rp42-pen	rp42 homolog (pending) and rp42 homolog	0.022
ogt.2	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2	0.022
dclre1a	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)	0.022
pold1	polymerase (DNA directed), delta 1, catalytic subunit	0.022
actl6a	actin-like 6A	0.022
epb4.1l4	erythrocyte protein band 4.1-like 4	0.022
prim1	primase polypeptide 1	0.021
ftsj	FtsJ homolog 3 (E. coli)	0.021
si:ch211-59d15.5	si:ch211-59d15.5	0.021
fshb	follicle stimulating hormone, beta polypeptide	0.021
ckap5	cytoskeleton associated protein 5	0.021
fam60al	family with sequence similarity 60, member A, like	0.020
drl	draculin	0.020
pcna	proliferating cell nuclear antigen	0.020
dnmt3	DNA (cytosine-5-)-methyltransferase 3	0.020
si:dkey-236e20.6	si:dkey-236e20.6	0.020
mef2cb	myocyte enhancer factor 2cb	0.019
hdac1	histone deacetylase 1	0.019
crsp6	cofactor required for Sp1 transcriptional activation, subunit 6	0.019
seta	SET translocation (myeloid leukemia-associated) A	0.019
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.019
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.019
arrdc1a	arrestin domain containing 1a	0.018
cebpd	CCAAT/enhancer binding protein (C/EBP), delta	0.018
si:ch211-198a12.6	si:ch211-198a12.6	0.018
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.018
neil3	nei endonuclease VIII-like 3 (E. coli)	0.018
usp1	ubiquitin specific protease 1	0.017
bzw1b	basic leucine zipper and W2 domains 1b	0.017
pdcd4a	programmed cell death 4a	0.017
api5	apoptosis inhibitor 5	0.017
myhz2	myosin, heavy polypeptide 2, fast muscle specific	0.017
oclna	occludin a	0.017	Rat
snrpa	small nuclear ribonucleoprotein polypeptide A	0.017
polr2eb	polymerase (RNA) II (DNA directed) polypeptide E, b	0.017
cga	glycoprotein hormones, alpha polypeptide	0.017
LOC554173	abnormal spindles	0.017
polm	polymerase (DNA directed), mu	0.017
scrt1b	scratch homolog 1, zinc finger protein b (Drosophila)	0.017
exosc6	exosome component 6	0.017
nnt	nicotinamide nucleotide transhydrogenase	0.017
chek2	CHK2 checkpoint homolog (S. pombe)	0.017
zgc:154063	zgc:154063	0.016
chek1	CHK1 checkpoint homolog (S. pombe)	0.016
rfc5	replication factor C (activator 1) 5	0.016
mecom	MDS1 and EVI1 complex locus	0.016
LOC567547	5,10-methylenetetrahydrofolate reductase (NADPH)-like	0.016
bmpr1ba	bone morphogenetic protein receptor, type 1ba	0.016
med4	mediator complex subunit 4	0.016
grk7a	G-protein-coupled receptor kinase 7a	0.016
zgc:153148	zgc:153148	0.016
zgc:110847	zgc:110847	0.016
cplx2l	complexin 2, like	0.016
LOC562624	transcription factor Sp3-like	0.015
anp32b	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	0.015
si:dkeyp-87e7.4	si:dkeyp-87e7.4	0.015
setd8a	SET domain containing (lysine methyltransferase) 8a	0.015	Human Fly
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.015
cbr1l	carbonyl reductase 1-like	0.015
lmnb1	lamin B1	0.015
otpa	orthopedia homolog a	0.015
sulf2	sulfatase 2	0.015
paxip1	PAX interacting (with transcription-activation domain) protein 1	0.014	Human Mouse
zgc:110337	zgc:110337	0.014
palb2	partner and localizer of BRCA2	0.014
esco2	establishment of cohesion 1 homolog 2	0.014
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.014
tinf2	TERF1 (TRF1)-interacting nuclear factor 2	0.014
plp1a	proteolipid protein 1a	0.014
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.014
map2k4a	mitogen-activated protein kinase kinase 4a	0.014
mobkl1b	MOB1, Mps One Binder kinase activator-like 1B (yeast)	0.014
rbpja	recombination signal binding protein for immunoglobulin kappa J region a	0.014
ssbp3b	single stranded DNA binding protein 3b	0.014
rpap1	RNA polymerase II associated protein 1	0.014
si:dkey-1h6.1	si:dkey-1h6.1	0.014
eif4g2a	eukaryotic translation initiation factor 4, gamma 2a	0.014
ptpn12	protein tyrosine phosphatase, non-receptor type 12	0.014
smfn	small fragment nuclease	0.014
efna2	ephrin A2	0.013
aldh6a1	aldehyde dehydrogenase 6 family, member A1	0.013
cyp17a1	cytochrome P450, family 17, subfamily A, polypeptide 1	0.013
zgc:113210	zgc:113210	0.013
zgc:111944	zgc:111944	0.013
dio2	deiodinase, iodothyronine, type II	0.013
taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.013
oip5	opa interacting protein 5	0.013
eif4e1b	eukaryotic translation initiation factor 4e 1b	0.013
fhla	four and a half LIM domains a	0.013
pdcd7	programmed cell death 7	0.013
gata1a	GATA binding protein 1a	0.013
sb:eu1637	sb:eu1637	0.013
tcea1	transcription elongation factor A (SII), 1	0.013
pola2	polymerase (DNA directed), alpha 2	0.013
c11orf2	c11orf2 homolog (H. sapiens)	0.013
ltk	leukocyte tyrosine kinase	0.012
setb	SET translocation (myeloid leukemia-associated) B	0.012
fkbp5	FK506 binding protein 5	0.012
mmp15a	matrix metallopeptidase 15a	0.012
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.012
wu:fd23d07	wu:fd23d07	0.012
pdcd2	programmed cell death 2	0.012
rplp1	ribosomal protein, large, P1	0.012
dhx15	DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.012
cldnb	claudin b	0.012
pccb	propionyl Coenzyme A carboxylase, beta polypeptide	0.012
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.012
otul	OTU like protein	0.012
cherp	calcium homeostasis endoplasmic reticulum protein	0.012
poll	polymerase (DNA directed), lambda	0.012
dazl	daz-like gene	0.012
cbll1	Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1	0.012
tubg1	tubulin, gamma 1	0.012
nkrf	NF-kappa B repressing factor	0.012
pbrm1l	polybromo 1, like	0.012
mcm3	MCM3 minichromosome maintenance deficient 3 (S. cerevisiae)	0.012
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.011
nrf1	nuclear respiratory factor 1	0.011
ptf1a	pancreas specific transcription factor, 1a	0.011
ogdh	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	0.011
im:7153552	im:7153552	0.011
id3	inhibitor of DNA binding 3	0.011
fbxl14a	F-box and leucine-rich repeat protein 14a	0.011
lhb	luteinizing hormone, beta polypeptide	0.011
cdh15	cadherin 15, M-cadherin (myotubule)	0.011
atxn7l2a	ataxin 7-like 2a	0.011
h2afv	H2A histone family, member V	0.011
inppl1a	inositol polyphosphate phosphatase-like 1a	0.011
mtf2	metal response element binding transcription factor 2	0.011
wtap	Wilms tumor 1 associated protein	0.011	Human
dcc	deleted in colorectal carcinoma	0.011
tal2	T-cell acute lymphocytic leukemia 2	0.011
tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.011
gro1	groucho 1	0.011
hirip3	HIRA interacting protein 3	0.011
srsf4	serine/arginine-rich splicing factor 4	0.011
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.011
rab11fip4a	RAB11 family interacting protein 4 (class II) a	0.011
bag6	BCL2-associated athanogene 6	0.011
mak16	MAK16 homolog (S. cerevisiae)	0.011
msrb3	methionine sulfoxide reductase B3	0.011
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.011
cpsf3	cleavage and polyadenylation specific factor 3	0.011
ep300b	E1A binding protein p300 b	0.011
top2a	topoisomerase (DNA) II alpha	0.010
sox19b	SRY-box containing gene 19b	0.010
nktr	natural killer-tumor recognition sequence	0.010
drd4-rs	dopamine receptor D4 related sequence	0.010
fancd2	Fanconi anemia, complementation group D2	0.010
wu:fa99c08	wu:fa99c08	0.010
tnrc5	trinucleotide repeat containing 5	0.010
kop	askopos	0.010
usp7	ubiquitin specific peptidase 7 (herpes virus-associated)	0.010
mcmbp	minichromosome maintenance complex binding protein	0.010
pou3f3b	POU class 3 homeobox 3b	0.010
egln1	egl nine homolog 1 (C. elegans)	0.010
c1galt1b	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1b	0.010
zgc:56197	zgc:56197	0.010
pole2	polymerase (DNA directed), epsilon 2	0.010
fancg	Fanconi anemia, complementation group G	0.010
st13	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)	0.010
si:ch211-102c2.6	si:ch211-102c2.6	0.010
ankrd49	ankyrin repeat domain 49	0.010
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.010
spc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	0.010
immt	inner membrane protein, mitochondrial (mitofilin)	0.010
plod3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.010