IMP: Integrative Multi-species Prediction

Danio rerio

1 genes annotated in zebrafish

ncrna catabolic process

The chemical reactions and pathways resulting in the breakdown of non-coding RNA transcripts (ncRNAs). Includes the breakdown of cryptic unstable transcripts (CUTs).

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ncrna catabolic process"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "ncrna catabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
zgc:109901	zgc:109901	0.191
psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.158
psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.104
tmem93	transmembrane protein 93	0.103
psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.102
psmb3	proteasome (prosome, macropain) subunit, beta type, 3	0.089
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.070
dcaf13	ddb1 and cul4 associated factor 13	0.067
rbm17	RNA binding motif protein 17	0.066
usp14	ubiquitin specific protease 14 (tRNA-guanine transglycosylase)	0.063
imp3	IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.049
rnaset2l	ribonuclease T2, like	0.048	Zebrafish
psmc1b	proteasome (prosome, macropain) 26S subunit, ATPase, 1b	0.044
ef1a	elongation factor 1-alpha	0.043
psmb5	proteasome (prosome, macropain) subunit, beta type, 5	0.042
psmb4	proteasome (prosome, macropain) subunit, beta type, 4	0.041
tcea1	transcription elongation factor A (SII), 1	0.040
ppp2cb	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.037
zgc:55461	zgc:55461	0.035
prmt7	protein arginine N-methyltransferase 7	0.035
psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	0.035
psmd6	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	0.033
mbnl1	muscleblind-like (Drosophila)	0.032
psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.031
zgc:77052	zgc:77052	0.031
im:7148292	im:7148292	0.029
dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.029
asnsd1	asparagine synthetase domain containing 1	0.028
diexf	digestive organ expansion factor homolog	0.027
grsf1	G-rich RNA sequence binding factor 1	0.027
snrpa	small nuclear ribonucleoprotein polypeptide A	0.026
faf2	Fas associated factor family member 2	0.026
orc3	origin recognition complex, subunit 3	0.024
ppil2	peptidylprolyl isomerase (cyclophilin)-like 2	0.024
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.024
nudc	nuclear distribution gene C homolog	0.024
si:ch1073-351m12.1	si:ch1073-351m12.1	0.024
mphosph6	M-phase phosphoprotein 6	0.024
phf6	PHD finger protein 6	0.024
thoc1	THO complex 1	0.024
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.024
zgc:56576	zgc:56576	0.023
phax	phosphorylated adaptor for RNA export	0.023
antxr2a	anthrax toxin receptor 2a	0.022
zgpat	zinc finger, CCCH-type with G patch domain	0.022
gps1	G protein pathway suppressor 1	0.022
psmc3	proteasome (prosome, macropain) 26S subunit, ATPase, 3	0.021
zgc:77241	zgc:77241	0.021
lats1	LATS, large tumor suppressor, homolog 1 (Drosophila)	0.020
zcchc9	zinc finger, CCHC domain containing 9	0.020
cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)	0.020
psma8	proteasome (prosome, macropain) subunit, alpha type, 8	0.019
dnajc5ga	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a	0.019
znf259	zinc finger protein 259	0.019
si:dkeyp-22b2.3	si:dkeyp-22b2.3	0.019
polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.019
zgc:92139	zgc:92139	0.019
gtf2f2a	general transcription factor IIF, polypeptide 2a	0.018
mrps31	mitochondrial ribosomal protein S31	0.018
psmd4b	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4b	0.018
sirt6	sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)	0.018
gmcl1	germ cell-less homolog 1 (Drosophila)	0.018
ctsd	cathepsin D	0.018
zgc:110717	zgc:110717	0.018	Yeast
mga	MAX gene associated	0.017
ppp2r2d	protein phosphatase 2, regulatory subunit B, delta isoform	0.017
rnf168	ring finger protein 168	0.017
gtf3aa	general transcription factor IIIAa	0.017
riok1	RIO kinase 1 (yeast)	0.017
psmb2	proteasome (prosome, macropain) subunit, beta type, 2	0.017
dcun1d5	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	0.016
si:ch211-103f16.2	si:ch211-103f16.2	0.016
hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.016
blmh	bleomycin hydrolase	0.016
znf346	zinc finger protein 346	0.016
adnp2b	ADNP homeobox 2b	0.015
psmb7	proteasome (prosome, macropain) subunit, beta type, 7	0.015
pigu	phosphatidylinositol glycan anchor biosynthesis, class U	0.015
uba3	ubiquitin-like modifier activating enzyme 3	0.015
timp2a	tissue inhibitor of metalloproteinase 2a	0.015
slc2a8	solute carrier family 2 (facilitated glucose transporter), member 8	0.015
mylka	myosin, light chain kinase a	0.015
c20orf20	c20orf20 homolog (H. sapiens)	0.015
prmt6	protein arginine methyltransferase 6	0.015
polr3f	polymerase (RNA) III (DNA directed) polypeptide F	0.015
psmc1a	proteasome (prosome, macropain) 26S subunit, ATPase, 1a	0.015
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.014
arpc1a	actin related protein 2/3 complex, subunit 1A	0.014
snrpb2	small nuclear ribonucleoprotein polypeptide B2	0.014
cldn12	claudin 12	0.014
mettl6	methyltransferase like 6	0.014
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.014
fut10	fucosyltransferase 10	0.014
cpsf3	cleavage and polyadenylation specific factor 3	0.014
abcf1	ATP-binding cassette, sub-family F (GCN20), member 1	0.014
asah1b	N-acylsphingosine amidohydrolase (acid ceramidase) 1b	0.014
eif2b4	eukaryotic translation initiation factor 2B, subunit 4 delta	0.014
zgc:103697	zgc:103697	0.013
lgals2a	lectin, galactoside-binding, soluble, 2a	0.013
sybu	syntabulin (syntaxin-interacting)	0.013
esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.013
ciapin1	cytokine induced apoptosis inhibitor 1	0.013
lrrc40	leucine rich repeat containing 40	0.013
atp6v0ca	ATPase, H+ transporting, lysosomal, V0 subunit c, a	0.013
drg1	developmentally regulated GTP binding protein 1	0.013
zgc:77655	zgc:77655	0.013
phf16	PHD finger protein 16	0.013
usp5	ubiquitin specific protease 5	0.013
bc2	putative breast adenocarcinoma marker	0.013
zgc:153063	zgc:153063	0.013
glrx3	glutaredoxin 3	0.013
lrmp	lymphoid-restricted membrane protein	0.012
cops3	COP9 constitutive photomorphogenic homolog subunit 3	0.012
psma2	proteasome (prosome, macropain) subunit, alpha type, 2	0.012
gstt1b	glutathione S-transferase theta 1b	0.012
sdad1	SDA1 domain containing 1	0.012
tipin	timeless interacting protein	0.012
zgc:92775	zgc:92775	0.012
psma4	proteasome (prosome, macropain) subunit, alpha type, 4	0.012
rnaset2	ribonuclease T2	0.012
ywhaba	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a	0.012
taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.012
eftud2	elongation factor Tu GTP binding domain containing 2	0.012
taf9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.012
pik3r2	phosphoinositide-3-kinase, regulatory subunit, polypeptide 2	0.012
riok2	RIO kinase 2 (yeast)	0.011
th1l	TH1-like (Drosophila)	0.011
thoc3	THO complex 3	0.011
ccdc25	coiled-coil domain containing 25	0.011
zgc:86870	zgc:86870	0.011
naa15b	N(alpha)-acetyltransferase 15, NatA auxiliary subunit b	0.011
mbnl3	muscleblind-like 3 (Drosophila)	0.011
mrpl3	mitochondrial ribosomal protein L3	0.011
ddr2b	discoidin domain receptor family, member 2b	0.011
usp1	ubiquitin specific protease 1	0.011
adrm1b	adhesion regulating molecule 1b	0.011
ppp1r7	protein phosphatase 1, regulatory (inhibitor) subunit 7	0.011
psma6a	proteasome (prosome, macropain) subunit, alpha type, 6a	0.011
ccdc94	coiled-coil domain containing 94	0.011
sap30bp	SAP30 binding protein and SAP30 binding protein	0.011
vars	valyl-tRNA synthetase	0.011
tfip11	tuftelin interacting protein 11	0.011
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.011
polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.011
golga7	golgi autoantigen, golgin subfamily a, 7	0.011
sf3a2	splicing factor 3a, subunit 2	0.011
gtf2f1	general transcription factor IIF, polypeptide 1	0.011
sdf2	stromal cell-derived factor 2	0.011
mbnl2	muscleblind-like 2 (Drosophila)	0.011
zgc:56683	zgc:56683	0.010
rnf2	ring finger protein 2	0.010
psmd1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.010
hars	histidyl-tRNA synthetase	0.010
zgc:92607	zgc:92607	0.010
dda1	DET1 and DDB1 associated 1	0.010
b2m	beta-2-microglobulin	0.010
zgc:110116	zgc:110116	0.010
ern1	endoplasmic reticulum to nucleus signaling 1	0.010
hbs1l	HBS1-like (S. cerevisiae)	0.010
cax1	cation/H+ exchanger protein 1	0.010
zgc:64114	zgc:64114	0.010
nvl	nuclear VCP-like	0.010
eif2b3	eukaryotic translation initiation factor 2B, subunit 3 gamma	0.010
brd2b	bromodomain containing 2b	0.010