IMP: Integrative Multi-species Prediction

Danio rerio

1 genes annotated in zebrafish

Multi-species View

transcription from rna polymerase iii promoter

GO:0006383

The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "transcription from rna polymerase iii promoter"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "transcription from rna polymerase iii promoter" (in gray)

Name	Description	Probability	Func Analog Organism
rxrga	retinoid x receptor, gamma a	0.584	Zebrafish
nr2f2	nuclear receptor subfamily 2, group F, member 2	0.544	Zebrafish
rxrab	retinoid x receptor, alpha b	0.451	Zebrafish
erbb3b	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3b	0.435
plekhg4	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	0.421
robo4	roundabout homolog 4	0.399
nr2f1a	nuclear receptor subfamily 2, group F, member 1a	0.374	Zebrafish
rxrgb	retinoid X receptor, gamma b	0.367	Zebrafish
nr2f6b	nuclear receptor subfamily 2, group F, member 6b	0.358	Zebrafish
nr2f5	nuclear receptor subfamily 2, group F, member 5	0.335	Zebrafish
foxb1.1	forkhead box B1.1	0.299
foxa1	forkhead box A1	0.267
wif1	wnt inhibitory factor 1	0.224
her9	hairy-related 9	0.220
neo1	neogenin 1	0.218
pdgfaa	platelet-derived growth factor alpha a	0.181
meis2.1	myeloid ecotropic viral integration site 2.1	0.176
zgc:77304	zgc:77304	0.167
rxraa	retinoid X receptor, alpha a	0.163	Zebrafish
fzd7a	frizzled homolog 7a	0.160
ssbp4	single stranded DNA binding protein 4	0.151
mtp	microsomal triglyceride transfer protein	0.149
rargb	retinoic acid receptor, gamma b	0.143
pou3f3b	POU class 3 homeobox 3b	0.134
raraa	retinoic acid receptor, alpha a	0.133
zgc:66326	zgc:66326	0.130
irx3b	iroquois homeobox protein 3b	0.130
irx3a	iroquois homeobox protein 3a	0.123
dusp1	dual specificity phosphatase 1	0.107
zgc:55701	zgc:55701	0.106
sox19a	SRY-box containing gene 19a	0.100
prmt6	protein arginine methyltransferase 6	0.080
dlc	deltaC	0.075
smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.074
zgc:92467	zgc:92467	0.074
hhex	hematopoietically expressed homeobox	0.073
tgif1	TGFB-induced factor homeobox 1	0.072
cldn5a	claudin 5a	0.070
cbsb	cystathionine-beta-synthase b	0.070
gng13a	guanine nucleotide binding protein (G protein), gamma 13a	0.068
pgd	phosphogluconate hydrogenase	0.066
zgc:56326	zgc:56326	0.064
tead3a	TEA domain family member 3 a	0.061
wdr82	WD repeat domain containing 82	0.058
ihha	Indian hedgehog homolog a	0.056
lfng	lunatic fringe homolog	0.052
tfr1b	transferrin receptor 1b	0.049
aldob	aldolase b, fructose-bisphosphate	0.046
brp44	brain protein 44	0.045
epas1a	endothelial PAS domain protein 1a	0.045
fgfr4	fibroblast growth factor receptor 4	0.044
eif3g	eukaryotic translation initiation factor 3, subunit G	0.044
psen1	presenilin 1	0.043
fgfrl1a	fibroblast growth factor receptor-like 1a	0.043
gamt	guanidinoacetate N-methyltransferase	0.042
znf503	zinc finger protein 503	0.041
ptbp2	polypyrimidine tract binding protein 2	0.039
sp8b	sp8 transcription factor b	0.039
gngt2a	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a	0.039
rhoub	ras homolog gene family, member Ub	0.038
med7	mediator complex subunit 7	0.037
rassf1	Ras association (RalGDS/AF-6) domain family 1	0.037
sox4a	SRY-box containing gene 4a	0.037
ngdn	neuroguidin, EIF4E binding protein	0.035
cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.035
zgc:65979	zgc:65979	0.034
zgc:55573	zgc:55573	0.033
wnk1	WNK lysine deficient protein kinase 1	0.033
her4.2	hairy-related 4.2	0.033
cetn2	centrin, EF-hand protein, 2	0.032
meis1	myeloid ecotropic viral integration 1	0.032
sap30bp	SAP30 binding protein and SAP30 binding protein	0.032
zfand5a	zinc finger, AN1-type domain 5a	0.032
akirin1	akirin 1	0.031
chd7	chromodomain helicase DNA binding protein 7	0.031
jag1a	jagged 1a	0.031
zgc:172136	zgc:172136	0.031
pax3a	paired box gene 3a	0.030
tpbgl	trophoblast glycoprotein-like	0.030
slc1a3a	solute carrier family 1 (glial high affinity glutamate transporter), member 3a	0.030
strap	serine/threonine kinase receptor associated protein	0.030
hoxc8a	homeo box C8a	0.030
csrnp1b	cysteine-serine-rich nuclear protein 1b	0.030
metrn	meteorin, glial cell differentiation regulator	0.029
fzd2	frizzled homolog 2	0.029
cstf3	cleavage stimulation factor, 3' pre-RNA, subunit 3	0.029
cnn3a	calponin 3, acidic a	0.029
zbtb16a	zinc finger and BTB domain containing 16a	0.029
rtcd1	RNA terminal phosphate cyclase domain 1	0.029
slc12a9	solute carrier family 12 (potassium/chloride transporters), member 9	0.029
api5	apoptosis inhibitor 5	0.028
efna2	ephrin A2	0.027
zfp36l1b	zinc finger protein 36, C3H type-like 1b	0.027
puf60b	poly-U binding splicing factor b	0.027
cdx1a	caudal type homeo box transcription factor 1 a	0.027
zgc:55876	zgc:55876	0.027
vat1	vesicle amine transport protein 1 homolog (T californica)	0.027
wnt7bb	wingless-type MMTV integration site family, member 7Bb	0.026
slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	0.026
hn1l	hematological and neurological expressed 1-like	0.026
pob	partial optokinetic response b	0.025
acsbg2	acyl-CoA synthetase bubblegum family member 2	0.025
lyrm1	LYR motif containing 1	0.025
tra2b	transformer 2 beta homolog (Drosophila)	0.025
arl4cb	ADP-ribosylation factor-like 4Cb	0.025
jam3b	junctional adhesion molecule 3b	0.025
gas6	growth arrest-specific 6	0.025
hnf1ba	HNF1 homeobox Ba	0.025
syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	0.025
rxrba	retinoid x receptor, beta a	0.025
stra6	stimulated by retinoic acid gene 6 homolog (mouse)	0.024
cpa2	carboxypeptidase A2 (pancreatic)	0.024
rpl23a	ribosomal protein L23a	0.023
dmbx1b	diencephalon/mesencephalon homeobox 1b	0.023
rpl30	ribosomal protein L30	0.023
cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.023
sqstm1	sequestosome 1	0.023
nrp2b	neuropilin 2b	0.022
axin2	axin 2 (conductin, axil)	0.022
rasgef1bb	RasGEF domain family, member 1Bb	0.022
id1	inhibitor of DNA binding 1	0.022
jag2	jagged 2	0.022
myst2	MYST histone acetyltransferase 2	0.022
cldnc	claudin c	0.022
gabpb2a	GA repeat binding protein, beta 2a	0.022
tcf12	transcription factor 12	0.022
zc4h2	zinc finger, C4H2 domain containing	0.021
nr2f1b	nuclear receptor subfamily 2, group F, member 1b	0.021	Zebrafish
rbm4.2	RNA binding motif protein 4.2	0.021
cbx1a	chromobox homolog 1a (HP1 beta homolog Drosophila)	0.021
slc4a2a	solute carrier family 4, anion exchanger, member 2a	0.021
rag1	recombination activating gene 1	0.021
neurog1	neurogenin 1	0.021
msna	moesin a	0.021
pcdh10b	protocadherin 10b	0.020
sf3a2	splicing factor 3a, subunit 2	0.020
rarab	retinoic acid receptor, alpha b	0.020
rarga	retinoic acid receptor gamma a	0.020
ccnt2b	cyclin T2b	0.020
fam76b	family with sequence similarity 76, member B	0.020
zgc:153047	zgc:153047	0.020
LOC100536119	NAD-dependent deacetylase sirtuin-5-like	0.020
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.020
ikzf1	IKAROS family zinc finger 1 (Ikaros)	0.020
bhmt	betaine-homocysteine methyltransferase	0.020
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.020
met	met proto-oncogene (hepatocyte growth factor receptor)	0.020
dpf2l	D4, zinc and double PHD fingers family 2, like	0.019
pnn	pinin, desmosome associated protein	0.019
hhip	hedgehog interacting protein	0.019
isl2a	islet2a	0.019
cyp2y3	cytochrome P450, family 2, subfamily Y, polypeptide 3	0.019
tmem2	transmembrane protein 2	0.019
jak1	Janus kinase 1	0.019
igfbp1a	insulin-like growth factor binding protein 1a	0.019
srsf6a	serine/arginine-rich splicing factor 6a	0.019
fgfr2	fibroblast growth factor receptor 2	0.019
ss18	synovial sarcoma translocation, chromosome 18 (H. sapiens)	0.018
fzd8a	frizzled homolog 8a	0.018
uox	urate oxidase	0.018
sox3	SRY-box containing gene 3	0.018
shbg	sex hormone binding globulin	0.018
ing2	inhibitor of growth family, member 2	0.018
epha2	eph receptor A2	0.018
zgc:77051	zgc:77051	0.018
hprt1	hypoxanthine phosphoribosyltransferase 1	0.018
mpp1	membrane protein, palmitoylated 1	0.018
zgc:92903	zgc:92903	0.017
sox11a	SRY-box containing gene 11a	0.017
tmprss13b	transmembrane protease, serine 13b	0.017
cxxc1	CXXC finger 1 (PHD domain)	0.017
ins	preproinsulin	0.017
rab40c	RAB40c, member RAS oncogene family	0.017
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.017
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.017
pou3f2	POU class 3 homeobox 2	0.017
pax3b	paired box gene 3b	0.017
akirin2	akirin 2	0.017
fbp1b	fructose-1,6-bisphosphatase 1b	0.017
smarcd3b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b	0.017
mbd3a	methyl-CpG binding domain protein 3a	0.017
wu:fb17g07	wu:fb17g07	0.017
yap1	Yes-associated protein 1	0.017
junb	jun B proto-oncogene	0.017
mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.016
pcdh18a	protocadherin 18a	0.016
mxi1	max interacting protein	0.016
rorcb	RAR-related orphan receptor C b	0.016
krml2.2	Kreisler (mouse) maf-related leucine zipper homolog 2.2	0.016
zgc:66382	zgc:66382	0.016
hug	HuG	0.016
zgc:92194	zgc:92194	0.016
wdr5	WD repeat domain 5	0.016
msxb	muscle segment homeobox B	0.016
rcor1	REST corepressor 1	0.016
hoxc9a	homeo box C9a	0.016
zgc:153980	zgc:153980	0.016
plxnb2a	plexin b2a	0.016
tbx2b	T-box 2b	0.016
id2a	inhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a	0.016
ppp1r14ab	protein phosphatase 1, regulatory (inhibitor) subunit 14Ab	0.016
ftr82	finTRIM family, member 82	0.016
zbtb2b	zinc finger and BTB domain containing 2b	0.016
clic4	chloride intracellular channel 4	0.015
dhdhl	dihydrodiol dehydrogenase (dimeric), like	0.015
wdr45l	wdr45 like	0.015
wu:fc51d09	wu:fc51d09	0.015
wu:fb76c12	wu:fb76c12	0.015
scd	stearoyl-CoA desaturase (delta-9-desaturase)	0.015
itm2bb	integral membrane protein 2Bb	0.015
podxl	podocalyxin-like	0.015
sb:cb1058	sb:cb1058	0.015
otx2	orthodenticle homolog 2	0.015
dnajb6b	DnaJ (Hsp40) homolog, subfamily B, member 6b	0.015
zgc:153997	zgc:153997	0.015
wu:fc23b07	wu:fc23b07	0.015
uba3	ubiquitin-like modifier activating enzyme 3	0.015
krt18	keratin 18	0.015
cnih	cornichon homolog (Drosophila)	0.015
fgd4	FYVE, RhoGEF and PH domain containing 4	0.014
cyp11b2	cytochrome P450, family 11, subfamily B, polypeptide 2	0.014
rnf2	ring finger protein 2	0.014
greb1	growth regulation by estrogen in breast cancer 1	0.014
hoxb8a	homeo box B8a	0.014
degs1	degenerative spermatocyte homolog 1, lipid desaturase (Drosophila)	0.014
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.014
rpp14	ribonuclease P 14 subunit	0.014
si:dkeyp-68f6.1	si:dkeyp-68f6.1	0.014
flrt3	fibronectin leucine rich transmembrane 3	0.014
fkbp3	FK506 binding protein 3	0.014
sap18	sin3-associated polypeptide	0.014
txnipa	thioredoxin interacting protein a	0.014
ctsl1b	cathepsin L, 1 b	0.014
pcgf6	polycomb group ring finger 6	0.014
myca	myelocytomatosis oncogene a	0.014
hif1an	hypoxia-inducible factor 1, alpha subunit inhibitor	0.014
mbd3b	methyl-CpG binding domain protein 3b	0.014
akt2	v-akt murine thymoma viral oncogene homolog 2	0.014
nkrf	NF-kappa B repressing factor	0.014
zgc:56304	zgc:56304	0.013
sepw1	selenoprotein W, 1	0.013
optc	opticin	0.013
anp32a	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.013
cebpb	CCAAT/enhancer binding protein (C/EBP), beta	0.013
grk5	G protein-coupled receptor kinase 5	0.013
cd63	Cd63 antigen	0.013
selt2	selenoprotein T, 2	0.013
tp63	tumor protein p63	0.013
grhl1	grainyhead-like 1 (Drosophila)	0.013
ybx1	Y box binding protein 1	0.013
ccnd1	cyclin D1	0.013
zeb1	zinc finger E-box binding homeobox 1	0.013
zcchc8	zinc finger, CCHC domain containing 8	0.013
eef1db	elongation factor-1, delta, b	0.013
bmi1	B lymphoma Mo-MLV insertion region 1	0.013
twist2	twist2	0.013
ube2g1b	ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast)	0.013
si:dkey-204a24.6	si:dkey-204a24.6	0.013
id3	inhibitor of DNA binding 3	0.013
tbx3	T-box 3	0.013
enc1	ectodermal-neural cortex (with BTB-like domain)	0.013
zgc:55468	zgc:55468	0.013
arrdc2	arrestin domain containing 2	0.013
zgc:77744	zgc:77744	0.013
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.013
mmp9	matrix metalloproteinase 9	0.013
atf3	activating transcription factor 3	0.013
ptbp1a	polypyrimidine tract binding protein 1a	0.013
zgc:66472	zgc:66472	0.013
par1	paraxis	0.013
sox7	SRY-box containing gene 7	0.012
eif1b	eukaryotic translation initiation factor 1B	0.012
nkx2.2b	NK2 transcription factor related 2b	0.012
rpl6	ribosomal protein L6	0.012
gng2	guanine nucleotide binding protein (G protein), gamma 2	0.012
mtf2	metal response element binding transcription factor 2	0.012
vps18	vacuolar protein sorting protein 18	0.012
fuca2	fucosidase, alpha-L- 2, plasma	0.012
msxa	muscle segment homeobox A	0.012
zgc:92242	zgc:92242	0.012
flncb	filamin C, gamma b (actin binding protein 280)	0.012
uba52	ubiquitin A-52 residue ribosomal protein fusion product 1	0.012
aldh18a1	aldehyde dehydrogenase 18 family, member A1	0.012
acvr2a	activin receptor IIa	0.012
zgc:112095	zgc:112095	0.012
actr6	ARP6 actin-related protein 6 homolog (yeast)	0.012
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.012
dnm2l	dynamin2-like	0.012
zgc:123170	zgc:123170	0.012
irx1b	iroquois homeobox protein 1, b	0.012
phf6	PHD finger protein 6	0.012
prpf4b	PRP4 pre-mRNA processing factor 4 homolog B	0.012
myf5	myogenic factor 5	0.012
dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.012
zgc:101737	zgc:101737	0.012
zgc:161979	zgc:161979	0.012
stap2a	signal transducing adaptor family member 2a	0.012
aanat2	arylalkylamine N-acetyltransferase	0.012
zgc:64040	zgc:64040	0.012
thrb	thyroid hormone receptor beta	0.012
vps39	vacuolar protein sorting 39 homolog (S. cerevisiae)	0.012
mab21l2	mab-21-like 2	0.012
cxcl12b	chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)	0.011
rap1a	RAP1A, member of RAS oncogene family	0.011
upf1	upf1 regulator of nonsense transcripts homolog (yeast)	0.011
fstl1a	follistatin-like 1a	0.011
si:ch211-223p9.1	si:ch211-223p9.1	0.011
itgb1b	integrin, beta 1b	0.011
serpinb1l3	serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 3	0.011
acvr1l	activin A receptor, type I like	0.011
ywhah	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	0.011
atp1b3b	ATPase, Na+/K+ transporting, beta 3b polypeptide	0.011
emilin1a	elastin microfibril interfacer 1a	0.011
gps1	G protein pathway suppressor 1	0.011
dock8	dedicator of cytokinesis 8	0.011
med28	mediator complex subunit 28	0.011
t54l	T54 protein-like	0.011
ppp1cab	protein phosphatase 1, catalytic subunit, alpha isoform b	0.011
snrpd3	small nuclear ribonucleoprotein D3 polypeptide	0.011
ercc3	excision repair cross-complementing rodent repair deficiency, complementation group 3	0.011
fkbp5	FK506 binding protein 5	0.011
fmo5	flavin containing monooxygenase 5	0.011
puf60a	poly-U binding splicing factor a	0.011
glud1b	glutamate dehydrogenase 1b	0.011
tsc22d2	TSC22 domain family 2 and TSC22 domain family, member 2	0.011
atf1	activating transcription factor 1	0.011
six4.3	sine oculis homeobox homolog 4.3	0.011
tnpo3	transportin 3	0.011
rap2c	RAP2C, member of RAS oncogene family	0.011
nrarpa	notch-regulated ankyrin repeat protein a	0.011
tbcb	tubulin folding cofactor B	0.011
LOC100005938	hypothetical protein LOC100005938	0.011
tshz1	teashirt family zinc finger 1	0.011
zgc:85683	zgc:85683	0.011
phf10	PHD finger protein 10	0.011
ppil2	peptidylprolyl isomerase (cyclophilin)-like 2	0.011
prtga	protogenin homolog a (Gallus gallus)	0.011
apoc2	apolipoprotein C-II	0.011
eif2s1	eukaryotic translation initiation factor 2, subunit 1 alpha	0.011
si:dkey-233h2.3	si:dkey-233h2.3	0.011
rx1	retinal homeobox gene 1	0.011
zgc:66474	zgc:66474	0.011
fgfrl1b	fibroblast growth factor receptor-like 1b	0.011
zgc:77155	zgc:77155	0.011
rpl36	ribosomal protein L36	0.011
foxa3	forkhead box A3	0.011
zgc:77775	zgc:77775	0.011
wu:fv91b12	wu:fv91b12	0.010
zgc:153953	zgc:153953	0.010
smarcb1a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a	0.010
copb2	coatomer protein complex, subunit beta 2	0.010
emp2	epithelial membrane protein 2	0.010
auts2	autism susceptibility candidate 2	0.010
ywhae1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1	0.010
ctsba	cathepsin B, a	0.010
lrrtm1	leucine rich repeat transmembrane neuronal 1	0.010
caprin1a	cell cycle associated protein 1a	0.010
fn1b	fibronectin 1b	0.010
coe2	coe2	0.010
slc27a2	solute carrier family 27 (fatty acid transporter), member 2	0.010
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.010
polr2gl	polymerase (RNA) II (DNA directed) polypeptide G-like	0.010
gdf6b	growth differentiation factor 6b	0.010
hoxb5a	homeo box B5a	0.010
eif3d	eukaryotic translation initiation factor 3, subunit D	0.010
copeb	core promoter element binding protein	0.010
rhogc	ras homolog gene family, member Gc	0.010
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.010
ccnl1	cyclin L1	0.010
wu:fb58e05	wu:fb58e05	0.010
tsc22d3	TSC22 domain family, member 3	0.010
fzd5	frizzled homolog 5	0.010