IMP: Integrative Multi-species Prediction

Danio rerio

8 genes annotated in zebrafish

Multi-species View

rrna metabolic process

GO:0016072

The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafishInclude functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rrna metabolic process"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "rrna metabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
im:7148292	im:7148292	0.665
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.484	Yeast
wdr75	WD repeat domain 75	0.483
tbl3	transducin (beta)-like 3	0.429	Yeast
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.345
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.284	Yeast
pes	pescadillo	0.245	Human Yeast Mouse
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.192	Yeast
rpl14	ribosomal protein L14	0.190	Human
gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.159	Yeast
wdr3	WD repeat domain 3	0.153	Yeast
si:dkey-91i17.1	si:dkey-91i17.1	0.150
diexf	digestive organ expansion factor homolog	0.145
fbl	fibrillarin	0.143	Yeast
polr1a	polymerase (RNA) I polypeptide A	0.138
wdr36	WD repeat domain 36	0.138
etf1	eukaryotic translation termination factor 1	0.133
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.115
rps15	ribosomal protein S15	0.113	Human
surf6	surfeit 6	0.100
rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.091
npm1	nucleophosmin 1	0.091
rpl35	ribosomal protein L35	0.086
rps15a	ribosomal protein S15a	0.085
rpl13	ribosomal protein L13	0.084
rpl7l1	ribosomal protein L7-like 1	0.077
ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.076
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.076	Yeast
rpl7	ribosomal protein L7	0.071	Human
wdr46	WD repeat domain 46	0.068
rps4x	ribosomal protein S4, X-linked	0.067
rps8a	ribosomal protein S8a	0.066	Yeast
rpsa	ribosomal protein SA	0.062
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.060
mki67ip	mki67 (FHA domain) interacting nucleolar phosphoprotein (human)	0.058
rpl13a	ribosomal protein L13a	0.054
pdcd11	programmed cell death 11	0.053	Yeast
rpl6	ribosomal protein L6	0.052
utp11l	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	0.052
zgc:56683	zgc:56683	0.050	Yeast
zgc:109888	zgc:109888	0.050	Yeast
mcmbp	minichromosome maintenance complex binding protein	0.048
nol6	nucleolar protein family 6 (RNA-associated)	0.047
rpl5b	ribosomal protein L5b	0.046	Human
rpl36a	ribosomal protein L36A	0.046
rpl11	ribosomal protein L11	0.043	Human
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.043
eif5a2	eukaryotic translation initiation factor 5A2	0.042
zgc:109901	zgc:109901	0.042	Human
rpl5a	ribosomal protein L5a	0.037	Human
tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.036
rps29	ribosomal protein S29	0.036
rps18	ribosomal protein S18	0.034
rpl3	ribosomal protein L3	0.033
rsl24d1	ribosomal L24 domain containing 1	0.033
pprc1	peroxisome proliferator-activated receptor gamma, coactivator-related 1	0.032
dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37	0.032	Yeast
bop1	block of proliferation 1	0.032	Human Yeast Mouse
noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.031	Yeast
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.028
eif4bb	eukaryotic translation initiation factor 4Bb	0.026
zgc:65996	zgc:65996	0.026
zgc:123327	zgc:123327	0.026
zgc:76988	zgc:76988	0.025
rps25	ribosomal protein S25	0.025
rpl19	ribosomal protein L19	0.025
rpl10a	ribosomal protein L10a	0.025
rps10	ribosomal protein S10	0.025
adssl	adenylosuccinate synthase, like	0.024
nolc1	nucleolar and coiled-body phosphoprotein 1	0.024
polr1c	polymerase (RNA) I polypeptide C	0.024
rrs1	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.024
nsun5	NOP2/Sun domain family, member 5	0.024
extl3	exostoses (multiple)-like 3	0.023
imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.021
zgc:123178	zgc:123178	0.021
rps7	ribosomal protein S7	0.021	Human
rps27a	ribosomal protein S27a	0.021
mphosph6	M-phase phosphoprotein 6	0.021
rps3	ribosomal protein S3	0.020
rpl7a	ribosomal protein L7a	0.020	Yeast
rpl38	ribosomal protein L38	0.020
ctps	CTP synthase	0.020
zgc:92872	zgc:92872	0.020
rps5	ribosomal protein S5	0.019
rpl18a	ribosomal protein L18a	0.019
pno1	partner of NOB1 homolog (S. cerevisiae)	0.019
nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae)	0.019
rps21	ribosomal protein S21	0.019
eef2a.1	eukaryotic translation elongation factor 2a, tandem duplicate 1	0.018
nat10	N-acetyltransferase 10	0.018
bysl	bystin-like	0.018	Yeast Mouse
wu:fk33d07	wu:fk33d07	0.018
nol10	nucleolar protein 10	0.017
rps12	ribosomal protein S12	0.017
noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.017	Yeast
rps19	ribosomal protein S19	0.017
polr1b	polymerase (RNA) I polypeptide B	0.017
fam203a	family with sequence similarity 203, member A	0.017
abcf2	ATP-binding cassette, sub-family F (GCN20), member 2	0.017
rps23	ribosomal protein S23	0.016
rnaset2l	ribonuclease T2, like	0.016	Zebrafish
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.016
wu:fa99c08	wu:fa99c08	0.016
riok2	RIO kinase 2 (yeast)	0.016
tpt1	tumor protein, translationally-controlled 1	0.015
nme2b.1	non-metastatic cells 2b.1, protein (NM23B) expressed in	0.015
tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.015
drg1	developmentally regulated GTP binding protein 1	0.015
dcaf13	ddb1 and cul4 associated factor 13	0.015	Yeast
zgc:73262	zgc:73262	0.015	Yeast
rps11	ribosomal protein S11	0.015	Yeast
rps9	ribosomal protein S9	0.014	Yeast
naca	nascent polypeptide-associated complex alpha polypeptide	0.014
psmb2	proteasome (prosome, macropain) subunit, beta type, 2	0.014
bxdc2	brix domain containing 2	0.014
rps26	ribosomal protein S26	0.014
prmt7	protein arginine N-methyltransferase 7	0.014
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.014
zgc:77052	zgc:77052	0.013
rps2	ribosomal protein S2	0.013
rae1	RAE1 RNA export 1 homolog (S. pombe)	0.013
nudc	nuclear distribution gene C homolog	0.013
rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.013
cpsf3	cleavage and polyadenylation specific factor 3	0.013
ppan	peter pan homolog (Drosophila)	0.013	Yeast
ruvbl2	RuvB-like 2 (E. coli)	0.012
prmt3	protein arginine methyltransferase 3	0.012
vars	valyl-tRNA synthetase	0.012
kri1l	KRI1 homolog like	0.012
ahctf1	AT hook containing transcription factor 1	0.012
rpl26	ribosomal protein L26	0.012	Human
zgc:77235	zgc:77235	0.012
sdad1	SDA1 domain containing 1	0.012
znf259	zinc finger protein 259	0.012
wu:fc55g01	wu:fc55g01	0.012
ppp2cb	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.012
wdr43	WD repeat domain 43	0.012
esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.011
rrp9	ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)	0.011
eif3g	eukaryotic translation initiation factor 3, subunit G	0.011
ncl	nucleolin	0.011
mak16	MAK16 homolog (S. cerevisiae)	0.011
psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	0.011
polr1e	polymerase (RNA) I polypeptide E	0.011
rpl23	ribosomal protein L23	0.011
setd6	SET domain containing 6	0.011
rps24	ribosomal protein S24	0.010	Human
rps3a	ribosomal protein S3A	0.010	Yeast
ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.010	Yeast
nop56	NOP56 ribonucleoprotein homolog	0.010
btf3	basic transcription factor 3	0.010
mars	methionine-tRNA synthetase	0.010
rangap1	Ran GTPase activating protein 1	0.010