IMP: Integrative Multi-species Prediction

Danio rerio

7 genes annotated in zebrafish

rrna processing

Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.

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In addition to gene-name show these genes:

Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rrna processing"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "rrna processing" (in gray)

Name	Description	Probability	Func Analog Organism
tbl3	transducin (beta)-like 3	0.818	Yeast
zgc:56683	zgc:56683	0.760	Yeast
im:7148292	im:7148292	0.663
gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.478	Yeast
rps4x	ribosomal protein S4, X-linked	0.393
rpl14	ribosomal protein L14	0.335	Human
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.321	Yeast
bop1	block of proliferation 1	0.265	Human Yeast Mouse
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.243	Yeast
ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.237
polr1a	polymerase (RNA) I polypeptide A	0.205
rpsa	ribosomal protein SA	0.197
rpl36a	ribosomal protein L36A	0.193
rpl7	ribosomal protein L7	0.185	Human
nsun5	NOP2/Sun domain family, member 5	0.179
nip7	nuclear import 7 homolog (S. cerevisiae)	0.158
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.147
utp11l	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	0.144
rps15a	ribosomal protein S15a	0.140
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.139
wdr75	WD repeat domain 75	0.137
surf6	surfeit 6	0.136
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.135	Yeast
rps12	ribosomal protein S12	0.130
rps3a	ribosomal protein S3A	0.124	Yeast
rpl19	ribosomal protein L19	0.103
rps10	ribosomal protein S10	0.100
rps29	ribosomal protein S29	0.096
etf1	eukaryotic translation termination factor 1	0.094
zgc:65996	zgc:65996	0.090
rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.086
zgc:109888	zgc:109888	0.083	Yeast
rps15	ribosomal protein S15	0.080	Human
rpl5a	ribosomal protein L5a	0.080	Human
polr1c	polymerase (RNA) I polypeptide C	0.080
si:dkey-91i17.1	si:dkey-91i17.1	0.077
noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.076	Yeast
ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.076	Yeast
rps8a	ribosomal protein S8a	0.071	Yeast
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.070
wu:fk33d07	wu:fk33d07	0.070
LOC563247	similar to ribosomal L1 domain containing 1	0.066
riok2	RIO kinase 2 (yeast)	0.065
tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.063
zgc:92237	zgc:92237	0.061	Human Yeast Mouse
znf259	zinc finger protein 259	0.061
ruvbl2	RuvB-like 2 (E. coli)	0.059
rpl13	ribosomal protein L13	0.059
bysl	bystin-like	0.058	Yeast Mouse
fbl	fibrillarin	0.058	Yeast
wdr3	WD repeat domain 3	0.057	Yeast
nat10	N-acetyltransferase 10	0.054
dcaf13	ddb1 and cul4 associated factor 13	0.053	Yeast
rpl10a	ribosomal protein L10a	0.052
rps18	ribosomal protein S18	0.050
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.050	Yeast
npm1	nucleophosmin 1	0.049
pes	pescadillo	0.047	Human Yeast Mouse
rpl7l1	ribosomal protein L7-like 1	0.045
rpl5b	ribosomal protein L5b	0.042	Human
rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.040
diexf	digestive organ expansion factor homolog	0.040
vars	valyl-tRNA synthetase	0.038
nol10	nucleolar protein 10	0.038
mphosph10	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	0.038
rps5	ribosomal protein S5	0.037
rpl12	ribosomal protein L12	0.037
rpl3	ribosomal protein L3	0.036
naca	nascent polypeptide-associated complex alpha polypeptide	0.034
zgc:136952	zgc:136952	0.033
rpl11	ribosomal protein L11	0.033	Human
nhp2	NHP2 ribonucleoprotein homolog (yeast)	0.032	Yeast
rps19	ribosomal protein S19	0.032
rps9	ribosomal protein S9	0.032	Yeast
zgc:92872	zgc:92872	0.031
wdr36	WD repeat domain 36	0.031
extl3	exostoses (multiple)-like 3	0.030
rpl23	ribosomal protein L23	0.030
nhp2l1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	0.029	Yeast
rps3	ribosomal protein S3	0.028
eif3m	eukaryotic translation initiation factor 3, subunit M	0.028
zgc:109901	zgc:109901	0.028	Human
noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.028	Yeast
rps23	ribosomal protein S23	0.027
rpl13a	ribosomal protein L13a	0.026
zgc:77702	zgc:77702	0.026	Human
nup43	nucleoporin 43	0.026
zgc:162967	zgc:162967	0.026
prmt3	protein arginine methyltransferase 3	0.026
zgc:76988	zgc:76988	0.026
ncl	nucleolin	0.026
zgc:55695	zgc:55695	0.025	Human
rps26	ribosomal protein S26	0.025
ruvbl1	RuvB-like 1 (E. coli)	0.024
eif5	eukaryotic translation initiation factor 5	0.024
ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.024
npm3	nucleophosmin/nucleoplasmin, 3	0.024
mki67ip	mki67 (FHA domain) interacting nucleolar phosphoprotein (human)	0.024
pdcd11	programmed cell death 11	0.023	Yeast
nom1	nucleolar protein with MIF4G domain 1	0.022
btf3	basic transcription factor 3	0.022
tfr1a	transferrin receptor 1a	0.021
imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.021
nup107	nucleoporin 107	0.021
rps14	ribosomal protein S14	0.020
rbm19	RNA binding motif protein 19	0.020	Yeast Worm
zgc:77235	zgc:77235	0.020
nop14	NOP14 nucleolar protein homolog (yeast)	0.019
nol6	nucleolar protein family 6 (RNA-associated)	0.018
mak16	MAK16 homolog (S. cerevisiae)	0.018
eef1g	eukaryotic translation elongation factor 1 gamma	0.017
tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.017
drg1	developmentally regulated GTP binding protein 1	0.017
rps25	ribosomal protein S25	0.017
nop10	NOP10 ribonucleoprotein homolog (yeast)	0.016
dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	0.016
polr1b	polymerase (RNA) I polypeptide B	0.016
wdr12	WD repeat domain 12	0.015	Human
zgc:123327	zgc:123327	0.015
sdad1	SDA1 domain containing 1	0.015
sart3	squamous cell carcinoma antigen recognised by T cells 3	0.015
prmt7	protein arginine N-methyltransferase 7	0.015
ctps	CTP synthase	0.015
zgc:77052	zgc:77052	0.015
eef1b2	eukaryotic translation elongation factor 1 beta 2	0.014
nop56	NOP56 ribonucleoprotein homolog	0.014
rsl24d1	ribosomal L24 domain containing 1	0.014
wu:fc55g01	wu:fc55g01	0.014
trmt2a	trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.014
ttc4	tetratricopeptide repeat domain 4	0.013
rpl35	ribosomal protein L35	0.013
bon	bonnie and clyde	0.013
rrp9	ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)	0.013
mars	methionine-tRNA synthetase	0.013
imp3	IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.013
fam203a	family with sequence similarity 203, member A	0.013
twistnb	TWIST neighbor	0.013
rps24	ribosomal protein S24	0.013	Human
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.013
rpl7a	ribosomal protein L7a	0.012	Yeast
mibp2	muscle-specific beta 1 integrin binding protein 2	0.012
wdr43	WD repeat domain 43	0.012
ptcd1	pentatricopeptide repeat domain 1	0.012
LOC100332577	pumilio domain-containing protein C14orf21-like	0.012
nvl	nuclear VCP-like	0.012
pus7	pseudouridylate synthase 7 homolog (S. cerevisiae)	0.011
sf3b1	splicing factor 3b, subunit 1	0.011
ppan	peter pan homolog (Drosophila)	0.011	Yeast
LOC100534720	apoptosis-enhancing nuclease-like	0.011
nop16	NOP16 nucleolar protein homolog (yeast)	0.011
rps11	ribosomal protein S11	0.010	Yeast
eef1da	elongation factor-1, delta, a	0.010
exosc9	exosome component 9	0.010
phf5a	PHD finger protein 5A	0.010
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.010