IMP: Integrative Multi-species Prediction

Danio rerio

2 genes annotated in zebrafish

spliceosomal snrnp assembly

The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "spliceosomal snrnp assembly"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "spliceosomal snrnp assembly" (in gray)

Name	Description	Probability	Func Analog Organism
snrpd3l	small nuclear ribonucleoprotein D3 polypeptide, like	0.724
snrpb2	small nuclear ribonucleoprotein polypeptide B2	0.708
phf5a	PHD finger protein 5A	0.559
sap18	sin3-associated polypeptide	0.471
smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.308
ilf2	interleukin enhancer binding factor 2	0.304
h2afv	H2A histone family, member V	0.206
ube2nb	ubiquitin-conjugating enzyme E2Nb	0.172
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.170
ctnnbl1	catenin, beta like 1	0.133
api5	apoptosis inhibitor 5	0.130
lsm7	LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.116
smx5	smx5	0.115
magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.107
zgc:110325	zgc:110325	0.099
usp1	ubiquitin specific protease 1	0.098
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.091
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.090
ran	ras-related nuclear protein	0.089
polr2j	polymerase (RNA) II (DNA directed) polypeptide J	0.085
wu:fa99c08	wu:fa99c08	0.081
zgc:103688	zgc:103688	0.081
snrpc	small nuclear ribonucleoprotein polypeptide C	0.080	Human
hars	histidyl-tRNA synthetase	0.079
zgc:86607	zgc:86607	0.076
smarcb1a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a	0.074
zgc:112305	zgc:112305	0.072
ruvbl1	RuvB-like 1 (E. coli)	0.072
snrpe	small nuclear ribonucleoprotein polypeptide E	0.071	Human
tmem93	transmembrane protein 93	0.071
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.068
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.066	Human
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.064
sae1	SUMO1 activating enzyme subunit 1	0.064
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.063
si:ch211-103f16.2	si:ch211-103f16.2	0.061
rbm8a	RNA binding motif protein 8A	0.060
gabpb2a	GA repeat binding protein, beta 2a	0.059
polr3k	polymerase (RNA) III (DNA directed) polypeptide K	0.057
snrpa	small nuclear ribonucleoprotein polypeptide A	0.052
zgc:77052	zgc:77052	0.051
snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.050
eif4e1c	eukaryotic translation initiation factor 4E family member 1c	0.048
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.047
lsm8	LSM8 homolog, U6 small nuclear RNA associated	0.046
polr2c	polymerase (RNA) II (DNA directed) polypeptide C	0.046
gng5	guanine nucleotide binding protein (G protein), gamma 5	0.045
zgc:86870	zgc:86870	0.045
prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.045
gspt1l	G1 to S phase transition 1, like	0.043
paf1	paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)	0.042
cpsf3	cleavage and polyadenylation specific factor 3	0.042
rbb4l	retinoblastoma binding protein 4, like	0.042
ssrp1a	structure specific recognition protein 1a	0.040
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.039
zgc:109901	zgc:109901	0.039
c1d	C1D nuclear receptor co-repressor	0.038
gtf3c4	general transcription factor IIIC, polypeptide 4	0.037
nedd8	neural precursor cell expressed, developmentally down-regulated 8	0.037
zgc:110717	zgc:110717	0.037
zgc:86715	zgc:86715	0.036
polr2i	polymerase (RNA) II (DNA directed) polypeptide I	0.036
smn1	survival motor neuron 1	0.035
eny2	enhancer of yellow 2 homolog (Drosophila)	0.034
ube2g1b	ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast)	0.033
zgc:55695	zgc:55695	0.033
LOC555279	hypothetical LOC555279	0.033
med28	mediator complex subunit 28	0.033
si:dkey-72l14.8	si:dkey-72l14.8	0.033
tnfaip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.033
sf3b14	splicing factor 3B	0.031
ck2a1	casein kinase 2 alpha 1	0.031
sf3a2	splicing factor 3a, subunit 2	0.030
supv3l1	suppressor of var1, 3-like 1 (S. cerevisiae)	0.030
orc3	origin recognition complex, subunit 3	0.029
psmb4	proteasome (prosome, macropain) subunit, beta type, 4	0.029
pfdn6	prefoldin subunit 6	0.028
actr6	ARP6 actin-related protein 6 homolog (yeast)	0.027
xab2	XPA binding protein 2	0.027
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.027
dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.027
polr2gl	polymerase (RNA) II (DNA directed) polypeptide G-like	0.025
kbtbd4	kelch repeat and BTB (POZ) domain containing 4	0.025
sf3b1	splicing factor 3b, subunit 1	0.025
nup50	nucleoporin 50	0.025
exosc9	exosome component 9	0.025
wu:fk48d07	wu:fk48d07	0.025
thoc6	THO complex 6 homolog (Drosophila)	0.025
bcas2	breast carcinoma amplified sequence 2	0.025
si:ch211-157f15.3	si:ch211-157f15.3	0.024
ranbp1	RAN binding protein 1	0.024
cwf19l1	CWF19-like 1, cell cycle control	0.024
tp53	tumor protein p53	0.024
pus3	pseudouridylate synthase 3	0.023
mettl2a	methyltransferase like 2A	0.023
trmt5	TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)	0.023
rbx1	ring-box 1	0.023
zgc:114119	zgc:114119	0.023
polr2eb	polymerase (RNA) II (DNA directed) polypeptide E, b	0.023
erh	enhancer of rudimentary homolog (Drosophila)	0.023
srsf2	serine/arginine-rich splicing factor 2	0.023
med29	mediator complex subunit 29	0.022
seta	SET translocation (myeloid leukemia-associated) A	0.022
rnf113a	ring finger protein 113A	0.022
sap30bp	SAP30 binding protein and SAP30 binding protein	0.022
ubin	ataxin-1 ubiquitin-like interacting protein	0.022
h3f3a	H3 histone, family 3A	0.022
cul1a	cullin 1a	0.022
pex3	peroxisomal biogenesis factor 3	0.022
zgc:91910	zgc:91910	0.021
etf1	eukaryotic translation termination factor 1	0.021
dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.021
cul3a	cullin 3a	0.021
thoc7	THO complex 7	0.021
prmt6	protein arginine methyltransferase 6	0.021
txnl4a	thioredoxin-like 4A	0.021
nudc	nuclear distribution gene C homolog	0.021
imp3	IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.020
tfdp1a	transcription factor Dp-1, a	0.020
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.020
u2af2b	U2 small nuclear RNA auxiliary factor 2b	0.020
htatsf1	HIV TAT specific factor 1	0.020
polr2a	polymerase (RNA) II (DNA directed) polypeptide A	0.020
hmgb2b	high-mobility group box 2b	0.020
zgc:110801	zgc:110801	0.019
tdp2b	tyrosyl-DNA phosphodiesterase 2b	0.019
rad54l	RAD54-like (S. cerevisiae)	0.019
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.019
smfn	small fragment nuclease	0.019
cand1	cullin-associated and neddylation-dissociated 1	0.018
mphosph6	M-phase phosphoprotein 6	0.018
wu:fd23d07	wu:fd23d07	0.018
cse1l	chromosome segregation 1-like (S. cerevisiae)	0.018
shfm1	split hand/foot malformation (ectrodactyly) type 1	0.018
qtrt1	queuine tRNA-ribosyltransferase 1	0.018
zgc:153368	zgc:153368	0.017
golt1b	golgi transport 1 homolog B (S. cerevisiae)	0.017
cdk8	cyclin-dependent kinase 8	0.017
rangap1	Ran GTPase activating protein 1	0.017
zgc:56388	zgc:56388	0.017
zgc:56197	zgc:56197	0.017
psmd10	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	0.017
nup107	nucleoporin 107	0.017
mak16	MAK16 homolog (S. cerevisiae)	0.017
taf9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.017
zgc:110682	zgc:110682	0.017
odc1	ornithine decarboxylase 1	0.017
ttc4	tetratricopeptide repeat domain 4	0.017
si:ch211-59d15.5	si:ch211-59d15.5	0.016
pcgf6	polycomb group ring finger 6	0.016
zgc:109973	zgc:109973	0.016
plrg1	pleiotropic regulator 1	0.016
ndnl2	necdin-like 2	0.016
rest	RE1-silencing transcription factor	0.016
ahsa1l	AHA1, activator of heat shock protein ATPase homolog 1, like	0.015
ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.015
h2afvl	H2A histone family, member V, like	0.015
extl3	exostoses (multiple)-like 3	0.015
sc:d173	sc:d173	0.015
ck2b	casein kinase 2 beta	0.015
rae1	RAE1 RNA export 1 homolog (S. pombe)	0.015
plk3	polo-like kinase 3 (Drosophila)	0.015
timm8a	translocase of inner mitochondrial membrane 8 homolog A (yeast)	0.015
hmgcrb	3-hydroxy-3-methylglutaryl-Coenzyme A reductase b	0.015
gps1	G protein pathway suppressor 1	0.015
dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37	0.014
usp10	ubiquitin specific peptidase 10	0.014
rnasen	ribonuclease type III, nuclear	0.014
psma4	proteasome (prosome, macropain) subunit, alpha type, 4	0.014
zgc:56106	zgc:56106	0.014
dnajc11	DnaJ (Hsp40) homolog, subfamily C, member 11	0.014
gon4l	gon-4-like (C.elegans)	0.014
ints6	integrator complex subunit 6	0.014
rabif	RAB interacting factor	0.014
ppil2	peptidylprolyl isomerase (cyclophilin)-like 2	0.014
cdc27	cell division cycle 27	0.014
tfr1a	transferrin receptor 1a	0.014
arpp19a	cAMP-regulated phosphoprotein 19a	0.014
th1l	TH1-like (Drosophila)	0.014
sart1	squamous cell carcinoma antigen recognised by T cells	0.014
ube2i2	ubiquitin-conjugating enzyme E2I2	0.014
mettl3	methyltransferase like 3	0.014
wu:fi04f09	wu:fi04f09	0.013
med10	mediator of RNA polymerase II transcription, subunit 10 homolog	0.013
wdr61	WD repeat domain 61	0.013
zgc:103697	zgc:103697	0.013
zgc:110664	zgc:110664	0.013
tubgcp2	tubulin, gamma complex associated protein 2	0.013
psmb5	proteasome (prosome, macropain) subunit, beta type, 5	0.013
hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	0.013
zgc:55634	zgc:55634	0.013
rbm19	RNA binding motif protein 19	0.013
hmgb2a	high-mobility group box 2a	0.013
wdr5	WD repeat domain 5	0.013
zgc:162634	zgc:162634	0.013
rpp14	ribonuclease P 14 subunit	0.013
dnaja1l	DnaJ (Hsp40) homolog, subfamily A, member 1, like	0.013
nedd4l	neural precursor cell expressed, developmentally down-regulated 4-like	0.012
dazl	daz-like gene	0.012
im:7141335	im:7141335	0.012
atrx	alpha thalassemia/mental retardation syndrome X-linked homolog (human)	0.012
zgc:112426	zgc:112426	0.012
dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16	0.012
eftud2	elongation factor Tu GTP binding domain containing 2	0.012	Yeast
polr1e	polymerase (RNA) I polypeptide E	0.012
npas2	neuronal PAS domain protein 2	0.012
pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	0.012
snf8	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	0.012
zgc:66242	zgc:66242	0.012
pofut1	protein O-fucosyltransferase 1	0.012
zmynd19	zinc finger, MYND domain containing 19	0.012
lmo2	LIM domain only 2 (rhombotin-like 1)	0.011
fth1a	ferritin, heavy polypeptide 1a	0.011
dclre1a	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)	0.011
elf2b	E74-like factor 2b (ets domain transcription factor)	0.011
polr3f	polymerase (RNA) III (DNA directed) polypeptide F	0.011
wdr82	WD repeat domain containing 82	0.011
rnps1	RNA binding protein S1, serine-rich domain	0.011
ppil4	peptidylprolyl isomerase (cyclophilin)-like 4	0.011
adar	adenosine deaminase, RNA-specific	0.011
cct3	chaperonin containing TCP1, subunit 3 (gamma)	0.011
ptrh2	peptidyl-tRNA hydrolase 2	0.011
psma5	proteasome (prosome, macropain) subunit, alpha type,5	0.011
rap1a	RAP1A, member of RAS oncogene family	0.011
rtf1	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.011
snrnp27	small nuclear ribonucleoprotein 27 (U4/U6.U5)	0.011
rad51c	rad51 homolog C (S. cerevisiae)	0.011
anapc5	anaphase promoting complex subunit 5	0.011
gtf2f1	general transcription factor IIF, polypeptide 1	0.011
scube2	signal peptide, CUB domain, EGF-like 2	0.011
snupn	snurportin 1	0.011
nudcd2	NudC domain containing 2	0.011
cdc26	cell division cycle 26 homolog	0.011
zgc:92794	zgc:92794	0.011
zgc:56596	zgc:56596	0.011
asnsd1	asparagine synthetase domain containing 1	0.011
mapkapk2a	mitogen-activated protein kinase-activated protein kinase 2a	0.011
LOC100333194	mitotic-spindle organizing protein 1-like	0.011
hnrnph1l	heterogeneous nuclear ribonucleoprotein H1, like	0.011
gtf3aa	general transcription factor IIIAa	0.011
ecd	ecdysoneless homolog (Drosophila)	0.011
maff	v-maf musculoaponeurotic fibrosarcoma oncogene homolog f (avian)	0.011
zgc:91844	zgc:91844	0.011
pop4	processing of precursor 4, ribonuclease P/MRP subunit	0.010
atg13	ATG13 autophagy related 13 homolog (S. cerevisiae)	0.010
zgc:55347	zgc:55347	0.010
ilf3b	interleukin enhancer binding factor 3b	0.010
prkci	protein kinase C, iota	0.010
morc3a	MORC family CW-type zinc finger 3a	0.010
kpna4	karyopherin alpha 4 (importin alpha 3)	0.010
celsr1a	cadherin EGF LAG seven-pass G-type receptor 1a	0.010
neil1	nei endonuclease VIII-like 1 (E. coli)	0.010
cenph	centromere protein H	0.010