IMP: Integrative Multi-species Prediction

Danio rerio

2 genes annotated in zebrafish

Multi-species View

rna polyadenylation

GO:0043631

The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rna polyadenylation"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "rna polyadenylation" (in gray)

Name	Description	Probability	Func Analog Organism
cfl2l	cofilin 2, like	0.328
wu:fb58e05	wu:fb58e05	0.231
appa	amyloid beta (A4) precursor protein a	0.218	Mouse
pabpc1a	poly A binding protein, cytoplasmic 1 a	0.186
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.158
ndrg4	N-myc downstream regulated gene 4	0.142
setdb1b	SET domain, bifurcated 1b	0.138
zgc:86598	zgc:86598	0.137
pabpc1b	poly A binding protein, cytoplasmic 1 b	0.132
wu:fi04f09	wu:fi04f09	0.123
si:ch211-57k11.10	si:ch211-57k11.10	0.121
zgc:66382	zgc:66382	0.115
eif3d	eukaryotic translation initiation factor 3, subunit D	0.103
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.100
cstf3	cleavage stimulation factor, 3' pre-RNA, subunit 3	0.096	Yeast
tgif1	TGFB-induced factor homeobox 1	0.095
spna2	spectrin alpha 2	0.090
ptprsa	protein tyrosine phosphatase, receptor type, s, a	0.082
aplp2	amyloid beta (A4) precursor-like protein 2	0.077
taf7	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.076
ptprfb	protein tyrosine phosphatase, receptor type, f, b	0.069
tcf12	transcription factor 12	0.065
abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	0.065
eif3c	eukaryotic translation initiation factor 3, subunit C	0.064
prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.063
nup107	nucleoporin 107	0.062
znf711	zinc finger protein 711	0.062
zgc:92194	zgc:92194	0.058
puf60a	poly-U binding splicing factor a	0.056
polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.055
rtn1a	reticulon 1a	0.055
cct2	chaperonin containing TCP1, subunit 2 (beta)	0.053
cpsf6	cleavage and polyadenylation specific factor 6	0.052	Human
zeb2a	zinc finger E-box binding homeobox 2a	0.051
pbrm1l	polybromo 1, like	0.050
cherp	calcium homeostasis endoplasmic reticulum protein	0.050
myef2	myelin expression factor 2	0.050
LOC100003680	proline-, glutamic acid- and leucine-rich protein 1-like	0.047
eef2b	eukaryotic translation elongation factor 2b	0.046
tdrd1	tudor domain containing 1	0.045
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.044
tubg1	tubulin, gamma 1	0.043
si:dkey-250d21.1	si:dkey-250d21.1	0.041
clstn1	calsyntenin 1	0.041
huwe1	HECT, UBA and WWE domain containing 1	0.039
wu:fc57f07	wu:fc57f07	0.039
cct8	chaperonin containing TCP1, subunit 8 (theta)	0.039
slc25a3b	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b	0.038
stau1	staufen, RNA binding protein, homolog 1 (Drosophila)	0.038
thoc5	THO complex 5	0.037
ywhag1	3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 1	0.037
pafah1b1b	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit b	0.037
hpca	hippocalcin	0.036
tdrd7	tudor domain containing 7	0.036
acsl1	acyl-CoA synthetase long-chain family member 1	0.036
bon	bonnie and clyde	0.036
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.035
prnprs3	prion protein, related sequence 3	0.034
LOC561889	granulito	0.033
zgc:113019	zgc:113019	0.032
lrmp	lymphoid-restricted membrane protein	0.031
hmgb2b	high-mobility group box 2b	0.031
mettl3	methyltransferase like 3	0.031
pbx4	pre-B-cell leukemia transcription factor 4	0.031
cnot3a	CCR4-NOT transcription complex, subunit 3a	0.031
rnps1	RNA binding protein S1, serine-rich domain	0.030
dip2c	DIP2 disco-interacting protein 2 homolog C (Drosophila)	0.030
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.030
mga	MAX gene associated	0.030
sf3b1	splicing factor 3b, subunit 1	0.030
tfip11	tuftelin interacting protein 11	0.029
si:ch211-157f15.3	si:ch211-157f15.3	0.029
prdm5	PR domain containing 5	0.029
si:dkey-181m9.9	si:dkey-181m9.9	0.029
fip1l1	FIP1 like 1 (S. cerevisiae)	0.028
ppwd1	peptidylprolyl isomerase domain and WD repeat containing 1	0.028
si:ch1073-351m12.1	si:ch1073-351m12.1	0.027
neo1	neogenin 1	0.027
zgc:163098	zgc:163098	0.026
zgc:66100	zgc:66100	0.025
ef1a	elongation factor 1-alpha	0.025
cdc5l	CDC5 cell division cycle 5-like (S. pombe)	0.024
gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	0.024
cdc23	CDC23 (cell division cycle 23, yeast, homolog)	0.024
hmgb3a	high-mobility group box 3a	0.023
pias4a	protein inhibitor of activated STAT, 4a	0.023
zgc:114097	zgc:114097	0.023
prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.022
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.022
mbd3a	methyl-CpG binding domain protein 3a	0.022
unc45a	unc-45 homolog A (C. elegans)	0.022
zgc:136773	zgc:136773	0.022
atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	0.021
zgc:123326	zgc:123326	0.021
macf1	microtubule-actin crosslinking factor 1	0.021
rbmx	RNA binding motif protein, X-linked	0.021
hist2h2l	histone 2, H2, like	0.021
wdr82	WD repeat domain containing 82	0.021
fam192a	family with sequence similarity 192, member A	0.021
spred1	sprouty-related, EVH1 domain containing 1	0.020
smarcb1b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b	0.020
atp6v0cb	ATPase, H+ transporting, lysosomal, V0 subunit c, b	0.020
mbnl3	muscleblind-like 3 (Drosophila)	0.020
smc1al	structural maintenance of chromosomes 1A, like	0.019
eed	embryonic ectoderm development	0.019
nf1a	neurofibromin 1a	0.019
gnb1a	guanine nucleotide binding protein (G protein), beta polypeptide 1a	0.019
ubxn7	UBX domain protein 7	0.019
slc30a4	solute carrier family 30 (zinc transporter), member 4	0.019
zgc:92126	zgc:92126	0.019
cpsf3l	cleavage and polyadenylation specific factor 3-like	0.019
sinup	siaz-interacting nuclear protein	0.018
dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.018
LOC555163	myelin protein zero-like protein 1-like	0.018
zgc:73237	zgc:73237	0.018
birc2	baculoviral IAP repeat-containing 2	0.018
zgc:113210	zgc:113210	0.018
wu:fb80a07	wu:fb80a07	0.018
sumf2	sulfatase modifying factor 2	0.018
tardbp	TAR DNA binding protein	0.018
nvl	nuclear VCP-like	0.017
atf4b1	activating transcription factor 4b1 (tax-responsive enhancer element B67)	0.017
sirt6	sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)	0.017
zgc:110460	zgc:110460	0.017
cntfr	ciliary neurotrophic factor receptor	0.017
zc3h14	zinc finger CCCH-type containing 14	0.017
gkap1	G kinase anchoring protein 1	0.017
phf2	PHD finger protein 2	0.017
ca15b	carbonic anhydrase XV b	0.017
tprb	translocated promoter region b (to activated MET oncogene)	0.017
med10	mediator of RNA polymerase II transcription, subunit 10 homolog	0.016
wu:fb80e01	wu:fb80e01	0.016
zgc:77051	zgc:77051	0.016
ier5l	immediate early response 5-like	0.016
wrb	tryptophan rich basic protein	0.016
pafah1b1a	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a	0.016
crnkl1	crooked neck pre-mRNA splicing factor-like 1 (Drosophila)	0.016
ptpn11a	protein tyrosine phosphatase, non-receptor type 11, a	0.016
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.015
osgep	O-sialoglycoprotein endopeptidase	0.015
csnk1a1	casein kinase 1, alpha 1	0.015
zgc:77551	zgc:77551	0.015
c20orf14	c20orf14 homolog (H. sapiens)	0.015
atf6	activating transcription factor 6	0.015
gatad2a	GATA zinc finger domain containing 2A	0.015
dazl	daz-like gene	0.015
clk4a	CDC-like kinase 4a	0.015
setdb2	SET domain, bifurcated 2	0.015
rnpc3	RNA-binding region (RNP1, RRM) containing 3	0.015
diexf	digestive organ expansion factor homolog	0.015
wu:fb63c04	wu:fb63c04	0.015
tspan3a	tetraspanin 3a	0.015
nr1h3	nuclear receptor subfamily 1, group H, member 3	0.015
thoc1	THO complex 1	0.015
zgc:158603	zgc:158603	0.015
ndst2a	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a	0.015
nar	no arches	0.015
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.015
ctbp1	C-terminal binding protein 1	0.015
ppm1aa	protein phosphatase, Mg2+/Mn2+ dependent, 1Aa	0.015
qdprb1	quinoid dihydropteridine reductase b1	0.015
kidins220b	kinase D-interacting substrate of 220b	0.014
zgc:77714	zgc:77714	0.014
zeb1	zinc finger E-box binding homeobox 1	0.014
ints6	integrator complex subunit 6	0.014
gcn1l1	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	0.014
mars	methionine-tRNA synthetase	0.014
snx30	sorting nexin family member 30	0.014
gng7	guanine nucleotide binding protein (G protein), gamma 7	0.014
slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	0.014
senp6a	SUMO1/sentrin specific peptidase 6a	0.014
patl1	protein associated with topoisomerase II homolog 1 (yeast)	0.014
ctnna	catenin (cadherin-associated protein), alpha	0.014
rbbp5	retinoblastoma binding protein 5	0.014
ybx1	Y box binding protein 1	0.013
kif5bb	kinesin family member 5B, b	0.013
tcp1	t-complex polypeptide 1	0.013
phf10	PHD finger protein 10	0.013
lppr3b	lipid phosphate phosphatase-related protein type 3b	0.013
senp3a	SUMO1/sentrin/SMT3 specific peptidase 3a	0.013
rbm42	RNA binding motif protein 42	0.013
paqr8	progestin and adipoQ receptor family member VIII	0.013
rif1	RAP1 interacting factor homolog (yeast)	0.013
taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.013
sybu	syntabulin (syntaxin-interacting)	0.013
psmd1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.013
tbx5a	T-box 5a	0.013
mkrn4	makorin, ring finger protein, 4	0.013
ash1l	ash1 (absent, small, or homeotic)-like (Drosophila)	0.013
nucks1a	nuclear casein kinase and cyclin-dependent kinase substrate 1a	0.013
axin1	axin 1	0.013
sumo2	SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)	0.013
wu:fa96e12	wu:fa96e12	0.013
nanos3	nanos homolog 3	0.013
cpsf2	cleavage and polyadenylation specific factor 2	0.012
top2b	topoisomerase (DNA) II beta	0.012
rsrc2	arginine/serine-rich coiled-coil 2	0.012
LOC100148274	hypothetical protein LOC100148274	0.012
zgc:55794	zgc:55794	0.012
auts2	autism susceptibility candidate 2	0.012
ern1	endoplasmic reticulum to nucleus signaling 1	0.012
cct4	chaperonin containing TCP1, subunit 4 (delta)	0.012
ube4b	ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	0.012
gmcl1	germ cell-less homolog 1 (Drosophila)	0.012
nfia	nuclear factor I/A	0.012
zgc:110091	zgc:110091	0.012
zgc:162967	zgc:162967	0.012
ift57	intraflagellar transport protein 57	0.012
krit1	KRIT1, ankyrin repeat containing	0.012
zgpat	zinc finger, CCCH-type with G patch domain	0.012
foxo3a	forkhead box O3A	0.012
zgc:55466	zgc:55466	0.012
vegfaa	vascular endothelial growth factor Aa	0.012
suds3	suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae)	0.012
zgc:103570	zgc:103570	0.012
zgc:92664	zgc:92664	0.012
ctcf	CCCTC-binding factor (zinc finger protein)	0.012
fzd7a	frizzled homolog 7a	0.012
th1l	TH1-like (Drosophila)	0.012
gng12a	guanine nucleotide binding protein (G protein), gamma 12a	0.012
upf3b	UPF3 regulator of nonsense transcripts homolog B (yeast)	0.011
akap8l	A kinase (PRKA) anchor protein 8-like	0.011
zgc:112350	zgc:112350	0.011
rbbp6	retinoblastoma binding protein 6	0.011
LOC560758	uncharacterized protein C19orf43-like	0.011
si:ch211-173p18.3	si:ch211-173p18.3	0.011
zgc:112271	zgc:112271	0.011
cox4i2	cytochrome c oxidase subunit IV isoform 2	0.011
puf60b	poly-U binding splicing factor b	0.011
npm4	nucleophosmin/nucleoplasmin, 4	0.011
nfyc	nuclear transcription factor Y, gamma	0.011
rwdd1	RWD domain containing 1	0.011
kiaa0947l	KIAA0947-like (H. sapiens)	0.011
glud1b	glutamate dehydrogenase 1b	0.011
ube2h	ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)	0.011
zgc:109986	zgc:109986	0.011
snap25a	synaptosome-associated protein 25a	0.011
pkd2	polycystic kidney disease 2	0.011
gtf2h2	general transcription factor IIH, polypeptide 2	0.011
sfswap	splicing factor, suppressor of white-apricot homolog (Drosophila)	0.011
zgc:193933	zgc:193933	0.011
mif4gda	MIF4G domain containing a	0.011
nrp2b	neuropilin 2b	0.011
cenph	centromere protein H	0.011
si:ch211-51m24.3	si:ch211-51m24.3	0.011
zgc:55936	zgc:55936	0.011
acvr2b	activin receptor IIb	0.011
robo1	roundabout homolog 1	0.011
si:dkey-151c10.1	si:dkey-151c10.1	0.011
zgc:92467	zgc:92467	0.011
zgc:153215	zgc:153215	0.011
spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.010
metrn	meteorin, glial cell differentiation regulator	0.010
wipi2	WD repeat domain, phosphoinositide interacting 2	0.010
rtf1	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.010
gtf3c3	general transcription factor IIIC, polypeptide 3	0.010
slc39a6	solute carrier family 39 (zinc transporter), member 6	0.010
stk25b	serine/threonine kinase 25b	0.010
nup88	nucleoporin 88	0.010
pdcd2	programmed cell death 2	0.010
rheb	ras homolog enriched in brain	0.010
ctsf	cathepsin F	0.010
ythdc1	YTH domain containing 1	0.010
zgc:113305	zgc:113305	0.010
map2k6	mitogen-activated protein kinase kinase 6	0.010
celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 and cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	0.010
tcf21	transcription factor 21	0.010
sc:d136	sc:d136	0.010
ctbp2	C-terminal binding protein 2	0.010
creg2	cellular repressor of E1A-stimulated genes 2	0.010
si:ch211-195d17.2	si:ch211-195d17.2	0.010
ccr7	chemokine (C-C motif) receptor 7	0.010