IMP: Integrative Multi-species Prediction

Danio rerio

1 genes annotated in zebrafish

Multi-species View

negative regulation of mrna processing

GO:0050686

Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA processing.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "negative regulation of mrna processing"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "negative regulation of mrna processing" (in gray)

Name	Description	Probability	Func Analog Organism
cx43.4	connexin 43.4	0.232
tgif1	TGFB-induced factor homeobox 1	0.112
ssb	Sjogren syndrome antigen B (autoantigen La)	0.107
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.104
h2afvl	H2A histone family, member V, like	0.096
sf1	splicing factor 1	0.083
si:dkey-250d21.1	si:dkey-250d21.1	0.080
yap1	Yes-associated protein 1	0.074
nhp2	NHP2 ribonucleoprotein homolog (yeast)	0.071
sf3b4	splicing factor 3b, subunit 4	0.067
hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.067
mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.066
zgc:86598	zgc:86598	0.063
jup	junction plakoglobin	0.062
si:dkey-181m9.9	si:dkey-181m9.9	0.054
psma8	proteasome (prosome, macropain) subunit, alpha type, 8	0.054
snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.048
snrpd3l	small nuclear ribonucleoprotein D3 polypeptide, like	0.047
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.045
cherp	calcium homeostasis endoplasmic reticulum protein	0.039
sf3a2	splicing factor 3a, subunit 2	0.036
hmga1a	high mobility group AT-hook 1a	0.036
zgc:64040	zgc:64040	0.036
anp32b	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	0.035
krt8	keratin 8	0.033
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.032
LOC560606	novel protein similar to human and mouse leishmanolysin-like (metallopeptidase M8 family) (LMLN)	0.032
khsrp	KH-type splicing regulatory protein	0.031
matr3l	matrin 3-like	0.031
cpsf6	cleavage and polyadenylation specific factor 6	0.029
zgc:123326	zgc:123326	0.029
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.029
pcdh2ac	protocadherin 2 alpha c	0.027
ctnna	catenin (cadherin-associated protein), alpha	0.026
rqcd1	RCD1 required for cell differentiation1 homolog (S. pombe)	0.025
wu:fb58e05	wu:fb58e05	0.025
zgc:77155	zgc:77155	0.024
slc30a6	solute carrier family 30 (zinc transporter), member 6	0.023
srsf11	serine/arginine-rich splicing factor 11	0.023
lrmp	lymphoid-restricted membrane protein	0.022
setb	SET translocation (myeloid leukemia-associated) B	0.022
marcksa	myristoylated alanine rich protein kinase C substrate a	0.021
wu:fi04f09	wu:fi04f09	0.021
LOC100331639	hypothetical protein LOC100331639	0.021
gng5	guanine nucleotide binding protein (G protein), gamma 5	0.021
zgc:112425	zgc:112425	0.021
nucks1a	nuclear casein kinase and cyclin-dependent kinase substrate 1a	0.021
celsr1a	cadherin EGF LAG seven-pass G-type receptor 1a	0.021
zgc:92194	zgc:92194	0.021
snrpc	small nuclear ribonucleoprotein polypeptide C	0.020
actn4	actinin, alpha 4	0.020
caprin1a	cell cycle associated protein 1a	0.020
prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.020
ftsj	FtsJ homolog 3 (E. coli)	0.019
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.019
hn1l	hematological and neurological expressed 1-like	0.019
ctnnb1	catenin (cadherin-associated protein), beta 1	0.019
ctsc	cathepsin C	0.019
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.018
srrm1	serine/arginine repetitive matrix 1	0.018
nr2f6a	nuclear receptor subfamily 2, group F, member 6a	0.018
zgc:56304	zgc:56304	0.018
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.018
kdm1a	lysine (K)-specific demethylase 1a	0.018
rfc2	replication factor C (activator 1) 2	0.017
tram1	translocating chain-associating membrane protein 1	0.017
LOC100004809	protein FAM78B-like	0.017
syncripl	synaptotagmin binding, cytoplasmic RNA interacting protein, like	0.017
zgc:66100	zgc:66100	0.017
nrxn1a	neurexin 1a	0.017
dbt	dihydrolipoamide branched chain transacylase E2	0.017
ran	ras-related nuclear protein	0.017
adka	adenosine kinase a	0.017
fb06f03	high-mobility group nucleosome binding domain 1-like	0.017
nup50	nucleoporin 50	0.017
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.017
ube2l3a	ubiquitin-conjugating enzyme E2L 3a	0.016
npm4	nucleophosmin/nucleoplasmin, 4	0.016	Mouse
slc30a4	solute carrier family 30 (zinc transporter), member 4	0.016
epha2	eph receptor A2	0.016
pa2g4a	proliferation-associated 2G4, a	0.016
u2af1	U2(RNU2) small nuclear RNA auxiliary factor 1	0.016
lsm14ab	LSM14 homolog Ab (SCD6, S. cerevisiae)	0.016
srsf2	serine/arginine-rich splicing factor 2	0.015
gatad2a	GATA zinc finger domain containing 2A	0.015
si:rp71-1p14.10	si:rp71-1p14.10	0.015
si:dkey-67c22.2	si:dkey-67c22.2	0.015
ef1	ETS-related factor1	0.015
zgc:112392	zgc:112392	0.015
eftud2	elongation factor Tu GTP binding domain containing 2	0.015
sav1	salvador homolog 1 (Drosophila)	0.015
zff9	zinc finger protein 9	0.015
srsf1a	serine/arginine-rich splicing factor 1a	0.015
thoc4	THO complex 4	0.015
grwd1	glutamate-rich WD repeat containing 1	0.014
rbm39a	RNA binding motif protein 39a	0.014
nrxn3a	neurexin 3a	0.014
zgc:103663	zgc:103663	0.014
usp10	ubiquitin specific peptidase 10	0.014
slc43a1a	solute carrier family 43, member 1a	0.014
bcas2	breast carcinoma amplified sequence 2	0.014
exosc4	exosome component 4	0.014
luc7l	LUC7-like (S. cerevisiae)	0.014
nat10	N-acetyltransferase 10	0.014
rabgef1l	RAB guanine nucleotide exchange factor (GEF) 1, like	0.014
ranbp1	RAN binding protein 1	0.013
ogt.2	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2	0.013
znf207a	zinc finger protein 207, a	0.013
ube2q2	ubiquitin-conjugating enzyme E2Q family member 2	0.013
polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.013
rbm4.2	RNA binding motif protein 4.2	0.013
slc39a11	solute carrier family 39 (metal ion transporter), member 11	0.013
hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.013	Mouse
polr3gla	polymerase (RNA) III (DNA directed) polypeptide G like a	0.013
zgc:86841	zgc:86841	0.013
h3f3b.1	H3 histone, family 3B.1	0.013
srsf5a	serine/arginine-rich splicing factor 5a	0.013
ilf3b	interleukin enhancer binding factor 3b	0.013
trnau1apl	tRNA selenocysteine 1 associated protein 1, like	0.013
arpc5a	actin related protein 2/3 complex, subunit 5A	0.012
atat1	alpha tubulin acetyltransferase 1	0.012
foxc1a	forkhead box C1a	0.012
scamp2	secretory carrier membrane protein 2	0.012
pes	pescadillo	0.012
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.012
ube2i2	ubiquitin-conjugating enzyme E2I2	0.012
drap1	DR1-associated protein 1 (negative cofactor 2 alpha)	0.012
snrpb	small nuclear ribonucleoprotein polypeptides B and B1	0.012
puf60a	poly-U binding splicing factor a	0.012
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.012
faf2	Fas associated factor family member 2	0.012
nras	neuroblastoma RAS viral (v-ras) oncogene homolog	0.012
wu:fb80e01	wu:fb80e01	0.012
ctbp1	C-terminal binding protein 1	0.012
xrn2	5'-3' exoribonuclease 2	0.012
zgc:65861	zgc:65861	0.012
ck2b	casein kinase 2 beta	0.012
ccnd1	cyclin D1	0.012
erf	Ets2 repressor factor	0.011
ppat	phosphoribosyl pyrophosphate amidotransferase	0.011
snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.011
id1	inhibitor of DNA binding 1	0.011
rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.011
akap8l	A kinase (PRKA) anchor protein 8-like	0.011
yth2	YTH domain family 2	0.011
nutf2	nuclear transport factor 2	0.011
npm1	nucleophosmin 1	0.011	Mouse
brd3a	bromodomain containing 3a	0.011
lck	lymphocyte-specific protein tyrosine kinase	0.011
srrm2	serine/arginine repetitive matrix 2	0.011
rhoad	ras homolog gene family, member Ad	0.011
fance	Fanconi anemia, complementation group E	0.011
hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.011
eif1b	eukaryotic translation initiation factor 1B	0.011
fip1l1	FIP1 like 1 (S. cerevisiae)	0.011
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.011
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.011
rrp12	ribosomal RNA processing 12 homolog (S. cerevisiae)	0.011
ybx1	Y box binding protein 1	0.011
zgc:92611	zgc:92611	0.011
lycat	lysocardiolipin acyltransferase	0.011
senp3a	SUMO1/sentrin/SMT3 specific peptidase 3a	0.011
rwdd1	RWD domain containing 1	0.011
rer1	RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	0.010
rorb	RAR-related orphan receptor B	0.010
atf1	activating transcription factor 1	0.010
si:dkey-236e20.6	si:dkey-236e20.6	0.010
hspd1	heat shock 60kD protein 1 (chaperonin)	0.010
sypb	synaptophysin b	0.010
noc2l	nucleolar complex associated 2 homolog (S. cerevisiae)	0.010
zmpste24	zinc metallopeptidase, STE24 homolog	0.010
mysm1	Myb-like, SWIRM and MPN domains 1	0.010
waca	WW domain containing adaptor with coiled-coil a	0.010
si:dkey-205h13.2	si:dkey-205h13.2	0.010
ppp1caa	protein phosphatase 1, catalytic subunit, alpha isoform a	0.010
zgc:110380	zgc:110380	0.010
pomt2	protein-O-mannosyltransferase 2	0.010
eif4a3	eukaryotic translation initiation factor 4A, isoform 3	0.010
thoc1	THO complex 1	0.010
srsf6b	serine/arginine-rich splicing factor 6b	0.010	Human
slc30a9	solute carrier family 30 (zinc transporter), member 9	0.010
ppp2cb	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.010
lmnl3	lamin L3	0.010