IMP: Integrative Multi-species Prediction

Danio rerio

3 genes annotated in zebrafish

3 utr mediated mrna stabilization

An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "3 utr mediated mrna stabilization"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "3 utr mediated mrna stabilization" (in gray)

Name	Description	Probability	Func Analog Organism
hmgb1b	high-mobility group box 1b	0.959
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.840
dag1	dystroglycan 1	0.681
gli1	GLI-Kruppel family member 1	0.356	Zebrafish
zgc:77366	zgc:77366	0.234
srsf2	serine/arginine-rich splicing factor 2	0.225
khdrbs1a	KH domain containing, RNA binding, signal transduction associated 1a	0.219	Zebrafish
api5	apoptosis inhibitor 5	0.198
boc	brother of CDO	0.157
sfrs3b	splicing factor, arginine/serine-rich 3b	0.155
cirbp	cold inducible RNA binding protein	0.146
celf1	cugbp, Elav-like family member 1	0.140
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.124
lamc1	laminin, gamma 1	0.099
zgc:112425	zgc:112425	0.096
lama2	laminin, alpha 2	0.094
actl6a	actin-like 6A	0.092
hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.091
lamb2	laminin, beta 2 (laminin S)	0.091
wu:fc24e06	wu:fc24e06	0.086
sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.083
cdkn1c	cyclin-dependent kinase inhibitor 1C (p57, Kip2)	0.076
ef1a	elongation factor 1-alpha	0.074
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.071	Zebrafish
ssb	Sjogren syndrome antigen B (autoantigen La)	0.070
wnt11	wingless-type MMTV integration site family, member 11	0.069
wu:fc57f07	wu:fc57f07	0.064
dnd	dead end	0.063
ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.063
hsp90a.1	heat shock protein 90-alpha 1	0.063
lamb1a	laminin, beta 1a	0.062
ptch2	patched 2	0.062
rcc2	regulator of chromosome condensation 2	0.060
oep	one-eyed pinhead	0.060
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.060
buc	bucky ball	0.059
sulf1	sulfatase 1	0.058
ywhae1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1	0.055
anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.054
atp2b1a	ATPase, Ca++ transporting, plasma membrane 1a	0.052
cnih	cornichon homolog (Drosophila)	0.051
stac3	SH3 and cysteine rich domain 3	0.051
wu:fc18c07	wu:fc18c07	0.050
mmgt1	membrane magnesium transporter 1	0.048
unc45b	unc-45 homolog B (C. elegans)	0.044
vangl2	vang-like 2 (van gogh, Drosophila)	0.044
setb	SET translocation (myeloid leukemia-associated) B	0.042
tcea1	transcription elongation factor A (SII), 1	0.042
ube2na	ubiquitin-conjugating enzyme E2Na	0.041
snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.041
ck2b	casein kinase 2 beta	0.040
scube2	signal peptide, CUB domain, EGF-like 2	0.040
zgc:193933	zgc:193933	0.040
ewsr1a	Ewing sarcoma breakpoint region 1a	0.040
h3f3b.1	H3 histone, family 3B.1	0.040
srsf4	serine/arginine-rich splicing factor 4	0.039
eif1b	eukaryotic translation initiation factor 1B	0.038
clic4	chloride intracellular channel 4	0.038
fbn2b	fibrillin 2b	0.037
chrnd	cholinergic receptor, nicotinic, delta polypeptide	0.037
abcf2	ATP-binding cassette, sub-family F (GCN20), member 2	0.037
hspa9	heat shock protein 9	0.036
mef2ca	myocyte enhancer factor 2ca	0.035
foxh1	forkhead box H1	0.035
chtopa	chromatin target of PRMT1a	0.035
sf3b1	splicing factor 3b, subunit 1	0.035
smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.034
itga5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.034
gli2a	GLI-Kruppel family member GLI2a	0.033
vcana	versican a	0.032
cx43.4	connexin 43.4	0.032
srsf5b	serine/arginine-rich splicing factor 5b	0.032
ube2v2	ubiquitin-conjugating enzyme E2 variant 2	0.032
fb06f03	high-mobility group nucleosome binding domain 1-like	0.031
zgc:77052	zgc:77052	0.031
id1	inhibitor of DNA binding 1	0.031
zfr	zinc finger RNA binding protein	0.031
wasb	Wiskott-Aldrich syndrome (eczema-thrombocytopenia) b	0.031
cdh2	cadherin 2, neuronal	0.030
nanos3	nanos homolog 3	0.029
ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.028
wu:fb17g07	wu:fb17g07	0.028
luc7l	LUC7-like (S. cerevisiae)	0.027
smyd1b	SET and MYND domain containing 1b	0.027
aldoaa	aldolase a, fructose-bisphosphate, a	0.027
hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.026	Mouse
sf1	splicing factor 1	0.026
hnrnph1l	heterogeneous nuclear ribonucleoprotein H1, like	0.026
fstl1b	follistatin-like 1b	0.026
hspa5	heat shock protein 5	0.025
prmt1	protein arginine methyltransferase 1	0.025
seta	SET translocation (myeloid leukemia-associated) A	0.025
hmgb1a	high-mobility group box 1a	0.025
tbx24	T-box 24	0.025
dpf2l	D4, zinc and double PHD fingers family 2, like	0.025
ppp1r7	protein phosphatase 1, regulatory (inhibitor) subunit 7	0.024
glud1b	glutamate dehydrogenase 1b	0.024
etf1	eukaryotic translation termination factor 1	0.023
robo3	roundabout homolog 3	0.023
hnrnpl2	heterogeneous nuclear ribonucleoprotein L2	0.023
cpsf6	cleavage and polyadenylation specific factor 6	0.023
cxcr4b	chemokine (C-X-C motif), receptor 4b	0.023
tia1l	cytotoxic granule-associated RNA binding protein 1, like	0.023
optc	opticin	0.022
ptp4a1	protein tyrosine phosphatase type IVA, member 1	0.022
rbm4.3	RNA binding motif protein 4.3	0.022
glulb	glutamate-ammonia ligase (glutamine synthase) b	0.022
rbm17	RNA binding motif protein 17	0.022
dzip1	DAZ interacting protein 1	0.022
seh1l	SEH1-like (S. cerevisiae)	0.022
ube2g2	ubiquitin-conjugating enzyme E2G 2	0.022
puf60b	poly-U binding splicing factor b	0.022
otul	OTU like protein	0.021
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.021
si:ch211-198a12.6	si:ch211-198a12.6	0.021
LOC796580	polyadenylate-binding protein 2-B-like	0.021
flot1b	flotillin 1b	0.021
fgfrl1a	fibroblast growth factor receptor-like 1a	0.021
vwa2	von Willebrand factor A domain containing 2	0.020
srsf6b	serine/arginine-rich splicing factor 6b	0.020
hes6	hairy and enhancer of split 6 (Drosophila)	0.020
ilf2	interleukin enhancer binding factor 2	0.020
rbpms2	RNA binding protein with multiple splicing 2	0.020
hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.019
fbln4	fibulin 4	0.019
dld	deltaD	0.019
dmd	dystrophin	0.019
col18a1	collagen type XVIII, alpha 1	0.018
ublcp1	ubiquitin-like domain containing CTD phosphatase 1	0.018
arf2	ADP-ribosylation factor 2	0.018
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.018	Human
pou5f1	POU domain, class 5, transcription factor 1	0.018
birc5b	baculoviral IAP repeat-containing 5B	0.018
lsm14b	LSM14B, SCD6 homolog B (S. cerevisiae)	0.018
calm3b	calmodulin 3b (phosphorylase kinase, delta)	0.018
zgc:55943	zgc:55943	0.018
ca15b	carbonic anhydrase XV b	0.018
acvr1l	activin A receptor, type I like	0.018
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.017
hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.017
srsf1a	serine/arginine-rich splicing factor 1a	0.017
atp1b2a	ATPase, Na+/K+ transporting, beta 2a polypeptide	0.017
ilf3b	interleukin enhancer binding factor 3b	0.017
eif4e1c	eukaryotic translation initiation factor 4E family member 1c	0.017
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.017
top1l	topoisomerase (DNA) I, like	0.017
sall4	sal-like 4 (Drosophila)	0.016
si:ch211-51e12.7	si:ch211-51e12.7	0.016
tdrd7	tudor domain containing 7	0.016
sybu	syntabulin (syntaxin-interacting)	0.015
notch2	notch homolog 2	0.015
mta2	metastasis associated 1 family, member 2	0.015
adnp2b	ADNP homeobox 2b	0.015
hoxa9a	homeo box A9a	0.015
nxn	nucleoredoxin	0.015
hnrpl	heterogeneous nuclear ribonucleoprotein L	0.015
xirp2a	xin actin-binding repeat containing 2a	0.015
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.015
lhx2b	LIM homeobox 2b	0.015
ctnna	catenin (cadherin-associated protein), alpha	0.015
smo	smoothened homolog (Drosophila)	0.015
LOC100330645	heterogeneous nuclear ribonucleoprotein U-like protein 1-like	0.015
cd82a	CD82 antigen, a	0.015
wdr82	WD repeat domain containing 82	0.015
fgfr1b	fibroblast growth factor receptor 1b	0.014
rbfox1l	RNA binding protein, fox-1 homolog (C. elegans) 1-like	0.014
phax	phosphorylated adaptor for RNA export	0.014
dvr1	decapentaplegic and Vg-related 1	0.014
rhogc	ras homolog gene family, member Gc	0.014
zgc:66286	zgc:66286	0.014
srsf11	serine/arginine-rich splicing factor 11	0.014
synpo2lb	synaptopodin 2-like b	0.014
wdr5	WD repeat domain 5	0.014
lama1	laminin, alpha 1	0.014
ywhaqb	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide b	0.014
tfb2m	transcription factor B2, mitochondrial	0.014
uba1	ubiquitin-like modifier activating enzyme 1	0.014
ppp1cab	protein phosphatase 1, catalytic subunit, alpha isoform b	0.014
gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.014
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.014
eif4g2a	eukaryotic translation initiation factor 4, gamma 2a	0.014
xirp1	xin actin-binding repeat containing 1	0.013
hmga1a	high mobility group AT-hook 1a	0.013
aco2	aconitase 2, mitochondrial	0.013
anp32a	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.013
zbtb22b	zinc finger and BTB domain containing 22b	0.013
mapre1	microtubule-associated protein, RP/EB family, member 1	0.013
znf346	zinc finger protein 346	0.013
syncripl	synaptotagmin binding, cytoplasmic RNA interacting protein, like	0.013
usp5	ubiquitin specific protease 5	0.013
zmpste24	zinc metallopeptidase, STE24 homolog	0.013
tbx2a	T-box gene 2a	0.013
ighz	immunoglobulin heavy constant zeta	0.013
wtap	Wilms tumor 1 associated protein	0.013
mc2r	melanocortin 2 receptor	0.013
sinup	siaz-interacting nuclear protein	0.013
zorba	Orb/CPEB-related RNA-binding protein	0.013
hdac1	histone deacetylase 1	0.013
cxcr4a	chemokine (C-X-C motif) receptor 4a	0.012
pdlim7	PDZ and LIM domain 7	0.012
lrmp	lymphoid-restricted membrane protein	0.012
tra2a	transformer-2 alpha	0.012
pomt1	protein-O-mannosyltransferase 1	0.012
lass2	LAG1 homolog, ceramide synthase 2 (S. cerevisiae)	0.012
fscn1	fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)	0.012
tmed9	transmembrane emp24 protein transport domain containing 9	0.012
ppp1r11	protein phosphatase 1, regulatory (inhibitor) subunit 11	0.012
efnb3b	ephrin B3b	0.012
tcf12	transcription factor 12	0.012
morf4l1	mortality factor 4 like 1	0.012
wrb	tryptophan rich basic protein	0.012
spry1	sprouty homolog 1 (Drosophila)	0.011
tpm2	tropomyosin 2 (beta)	0.011
dnajc5ga	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a	0.011
zgc:114097	zgc:114097	0.011
hp1bp3	heterochromatin protein 1, binding protein 3	0.011
cisd2	CDGSH iron sulfur domain 2	0.011
tmem2	transmembrane protein 2	0.011
zgc:77155	zgc:77155	0.011
ccnt2b	cyclin T2b	0.011
sb:cb560	sb:cb560	0.011
ptbp2	polypyrimidine tract binding protein 2	0.011
cul1a	cullin 1a	0.011
sf3a3	splicing factor 3a, subunit 3	0.011
pxn	paxillin	0.011
zgc:77262	zgc:77262	0.011
qk	quaking	0.011
arf6	ADP-ribosylation factor 6	0.011
ppp4ca	protein phosphatase 4 (formerly X), catalytic subunit a	0.011
smndc1	survival motor neuron domain containing 1	0.011
sb:cb166	sb:cb166	0.011
tardbpl	TAR DNA binding protein, like	0.011	Human
wu:fb80e01	wu:fb80e01	0.011
usp10	ubiquitin specific peptidase 10	0.011
rcor1	REST corepressor 1	0.011
atp1b1a	ATPase, Na+/K+ transporting, beta 1a polypeptide	0.011
zgc:112397	zgc:112397	0.011
fam60al	family with sequence similarity 60, member A, like	0.011
si:ch211-107o23.1	si:ch211-107o23.1	0.011
tra2b	transformer 2 beta homolog (Drosophila)	0.011
or125-8	odorant receptor, family E, subfamily 125, member 8	0.011
her12	hairy-related 12	0.010
plxna3	plexin A3	0.010
pcdh10b	protocadherin 10b	0.010
ddx41	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	0.010
midn	midnolin	0.010
uck2a	uridine-cytidine kinase 2a	0.010
marcksb	myristoylated alanine rich protein kinase C substrate b	0.010
usp7	ubiquitin specific peptidase 7 (herpes virus-associated)	0.010
bzw1b	basic leucine zipper and W2 domains 1b	0.010
rnd3a	Rho family GTPase 3a	0.010
wu:fk48d07	wu:fk48d07	0.010
zc3h15	zinc finger CCCH-type containing 15	0.010
sox11a	SRY-box containing gene 11a	0.010