IMP: Integrative Multi-species Prediction

Danio rerio

2 genes annotated in zebrafish

Multi-species View

mrna polyadenylation

GO:0006378

The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "mrna polyadenylation"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "mrna polyadenylation" (in gray)

Name	Description	Probability	Func Analog Organism
tcf12	transcription factor 12	0.204
eef2b	eukaryotic translation elongation factor 2b	0.185
rtn1a	reticulon 1a	0.161
thoc5	THO complex 5	0.097
ptprsa	protein tyrosine phosphatase, receptor type, s, a	0.088
psmd1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.078
sybu	syntabulin (syntaxin-interacting)	0.065
spna2	spectrin alpha 2	0.064
prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.057
pabpc1a	poly A binding protein, cytoplasmic 1 a	0.053
zgc:86598	zgc:86598	0.046
smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.038
gcn1l1	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	0.037
cfl2l	cofilin 2, like	0.037
si:ch211-57k11.10	si:ch211-57k11.10	0.036
nup107	nucleoporin 107	0.035
prnprs3	prion protein, related sequence 3	0.028
taf7	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.028
setdb1b	SET domain, bifurcated 1b	0.028
sf3b1	splicing factor 3b, subunit 1	0.027
atp1b3b	ATPase, Na+/K+ transporting, beta 3b polypeptide	0.026
cct2	chaperonin containing TCP1, subunit 2 (beta)	0.025
zgc:92194	zgc:92194	0.025
tgif1	TGFB-induced factor homeobox 1	0.024
wu:fi04f09	wu:fi04f09	0.024
cct5	chaperonin containing TCP1, subunit 5 (epsilon)	0.023
appa	amyloid beta (A4) precursor protein a	0.023	Mouse
pbx4	pre-B-cell leukemia transcription factor 4	0.022
eif3c	eukaryotic translation initiation factor 3, subunit C	0.022
dpysl3	dihydropyrimidinase-like 3	0.022
metrn	meteorin, glial cell differentiation regulator	0.021
puf60a	poly-U binding splicing factor a	0.021
polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.021
unc45a	unc-45 homolog A (C. elegans)	0.021
spred1	sprouty-related, EVH1 domain containing 1	0.020
ptprfb	protein tyrosine phosphatase, receptor type, f, b	0.020
cdc23	CDC23 (cell division cycle 23, yeast, homolog)	0.019
pafah1b1a	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a	0.019
cherp	calcium homeostasis endoplasmic reticulum protein	0.019
cpsf6	cleavage and polyadenylation specific factor 6	0.019	Human
dip2c	DIP2 disco-interacting protein 2 homolog C (Drosophila)	0.018
ppwd1	peptidylprolyl isomerase domain and WD repeat containing 1	0.018
atp6v0cb	ATPase, H+ transporting, lysosomal, V0 subunit c, b	0.018
kidins220b	kinase D-interacting substrate of 220b	0.018
dpysl5a	dihydropyrimidinase-like 5a	0.018
ptpn11a	protein tyrosine phosphatase, non-receptor type 11, a	0.017
zgc:193933	zgc:193933	0.017
zgc:136773	zgc:136773	0.017
LOC100536647	disintegrin and metalloproteinase domain-containing protein 10-like	0.017
lingo1b	leucine rich repeat and Ig domain containing 1b	0.017
snap25a	synaptosome-associated protein 25a	0.017
zgc:123326	zgc:123326	0.016
zgc:66100	zgc:66100	0.016
nup93	nucleoporin 93	0.016
aplp2	amyloid beta (A4) precursor-like protein 2	0.016
robo1	roundabout homolog 1	0.016
phf2	PHD finger protein 2	0.016
rbbp6	retinoblastoma binding protein 6	0.016
buc	bucky ball	0.016
yy1b	YY1 transcription factor b	0.016
ca15b	carbonic anhydrase XV b	0.016
pbrm1l	polybromo 1, like	0.016
rnps1	RNA binding protein S1, serine-rich domain	0.016
si:dkey-181m9.9	si:dkey-181m9.9	0.016
timp2a	tissue inhibitor of metalloproteinase 2a	0.015
myef2	myelin expression factor 2	0.015
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.015
cct8	chaperonin containing TCP1, subunit 8 (theta)	0.015
gkap1	G kinase anchoring protein 1	0.015
lrmp	lymphoid-restricted membrane protein	0.015
brca2	breast cancer 2, early onset	0.015
tfip11	tuftelin interacting protein 11	0.015
birc5b	baculoviral IAP repeat-containing 5B	0.015
mbnl2	muscleblind-like 2 (Drosophila)	0.015
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.014
LOC100003680	proline-, glutamic acid- and leucine-rich protein 1-like	0.014
hpca	hippocalcin	0.014
spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.014
cdc5l	CDC5 cell division cycle 5-like (S. pombe)	0.014
stau1	staufen, RNA binding protein, homolog 1 (Drosophila)	0.014
cstf3	cleavage stimulation factor, 3' pre-RNA, subunit 3	0.014	Yeast
eif2s2	eukaryotic translation initiation factor 2, subunit 2 beta	0.014
snx30	sorting nexin family member 30	0.014
ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.014
macf1	microtubule-actin crosslinking factor 1	0.013
acsl1	acyl-CoA synthetase long-chain family member 1	0.013
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.013
huwe1	HECT, UBA and WWE domain containing 1	0.013
dvl2	dishevelled, dsh homolog 2 (Drosophila)	0.013
nfia	nuclear factor I/A	0.013
setdb2	SET domain, bifurcated 2	0.013
patl1	protein associated with topoisomerase II homolog 1 (yeast)	0.013
ndrg4	N-myc downstream regulated gene 4	0.013
mettl3	methyltransferase like 3	0.012
her9	hairy-related 9	0.012
eif3d	eukaryotic translation initiation factor 3, subunit D	0.012
dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.012
zgc:113019	zgc:113019	0.012
c20orf14	c20orf14 homolog (H. sapiens)	0.012
cnot3a	CCR4-NOT transcription complex, subunit 3a	0.012
robo3	roundabout homolog 3	0.011
smarcb1b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b	0.011
gtf2h2	general transcription factor IIH, polypeptide 2	0.011
abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	0.011
zgc:163098	zgc:163098	0.011
drap1	DR1-associated protein 1 (negative cofactor 2 alpha)	0.011
pabpc1b	poly A binding protein, cytoplasmic 1 b	0.011
parn	poly(A)-specific ribonuclease (deadenylation nuclease)	0.011
ppp3ca	protein phosphatase 3, catalytic subunit, alpha isozyme	0.011
srsf5a	serine/arginine-rich splicing factor 5a	0.011
zc3h14	zinc finger CCCH-type containing 14	0.011
ppp2r2d	protein phosphatase 2, regulatory subunit B, delta isoform	0.011
myh10	myosin, heavy polypeptide 10, non-muscle and myosin, heavy chain 10, non-muscle	0.011
rnpc3	RNA-binding region (RNP1, RRM) containing 3	0.011
auts2	autism susceptibility candidate 2	0.011
clstn1	calsyntenin 1	0.011
zgc:92467	zgc:92467	0.011
fam168a	family with sequence similarity 168, member A	0.011
LOC569976	hypothetical protein LOC569976	0.010
cbx1a	chromobox homolog 1a (HP1 beta homolog Drosophila)	0.010
atf4b1	activating transcription factor 4b1 (tax-responsive enhancer element B67)	0.010
LOC561889	granulito	0.010
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.010
LOC100148274	hypothetical protein LOC100148274	0.010
fip1l1	FIP1 like 1 (S. cerevisiae)	0.010
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.010
tmem198b	transmembrane protein 198b	0.010
si:dkey-250d21.1	si:dkey-250d21.1	0.010
zgc:114097	zgc:114097	0.010