IMP: Integrative Multi-species Prediction

Danio rerio

2 genes annotated in zebrafish

Multi-species View

positive regulation of mrna metabolic process

GO:1903313

Any process that activates or increases the frequency, rate or extent of mRNA metabolic process.

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Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "positive regulation of mrna metabolic process"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "positive regulation of mrna metabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
nanos3	nanos homolog 3	0.513
tcf12	transcription factor 12	0.126
midn	midnolin	0.118
brca2	breast cancer 2, early onset	0.091
snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.090
fancl	Fanconi anemia, complementation group L	0.089
puf60b	poly-U binding splicing factor b	0.081
rnps1	RNA binding protein S1, serine-rich domain	0.072
ubin	ataxin-1 ubiquitin-like interacting protein	0.064
zgc:56304	zgc:56304	0.057
ilf2	interleukin enhancer binding factor 2	0.055
sf1	splicing factor 1	0.054
vasa	vasa homolog	0.053
nvl	nuclear VCP-like	0.046
macf1	microtubule-actin crosslinking factor 1	0.046
eef2b	eukaryotic translation elongation factor 2b	0.043
asz1	ankyrin repeat, SAM and basic leucine zipper domain containing 1	0.042
tdrd1	tudor domain containing 1	0.042
ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b	0.038
snrpc	small nuclear ribonucleoprotein polypeptide C	0.037
srsf6a	serine/arginine-rich splicing factor 6a	0.037
pou3f3a	POU class 3 homeobox 3a	0.035
robo1	roundabout homolog 1	0.034
cpsf6	cleavage and polyadenylation specific factor 6	0.033
rbb4l	retinoblastoma binding protein 4, like	0.033
ctnnb1	catenin (cadherin-associated protein), beta 1	0.032
nup50	nucleoporin 50	0.032
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.031
smarce1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.031
piwil2	piwi-like 2 (Drosophila)	0.030	Fly
piwil1	piwi-like 1 (Drosophila)	0.029	Fly
rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	0.028
zgc:136773	zgc:136773	0.027
amh	anti-Mullerian hormone	0.026
safb	scaffold attachment factor B	0.026
srsf11	serine/arginine-rich splicing factor 11	0.026
otul	OTU like protein	0.025
hpca	hippocalcin	0.025
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.025
mef2d	myocyte enhancer factor 2d	0.025
mos	v-mos Moloney murine sarcoma viral oncogene homolog	0.025
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.025
buc	bucky ball	0.024
msh6	mutS homolog 6 (E. coli)	0.024
ccna2	cyclin A2	0.024
rc3	rabconnectin 3	0.023
srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.023
znf207a	zinc finger protein 207, a	0.022
btg1	B-cell translocation gene 1	0.022
ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.022
cbx1a	chromobox homolog 1a (HP1 beta homolog Drosophila)	0.022
gnb1a	guanine nucleotide binding protein (G protein), beta polypeptide 1a	0.021
znf711	zinc finger protein 711	0.021
mbnl2	muscleblind-like 2 (Drosophila)	0.021
atf1	activating transcription factor 1	0.021
naa15a	N(alpha)-acetyltransferase 15, NatA auxiliary subunit a	0.020
slc25a3b	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b	0.020
zgc:153061	zgc:153061	0.020
nrxn1a	neurexin 1a	0.020
nup155	nucleoporin 155	0.020
camk2d2	calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2	0.020
morc2	MORC family CW-type zinc finger 2	0.019
pglyrp2	peptidoglycan recognition protein 2	0.019
rbm4.2	RNA binding motif protein 4.2	0.019
ttk	ttk protein kinase	0.019
nup93	nucleoporin 93	0.019
pdcd11	programmed cell death 11	0.019
gdf9	growth differentiation factor 9	0.019
matr3l	matrin 3-like	0.019
cfl2l	cofilin 2, like	0.018
ube2i	ubiquitin-conjugating enzyme E2I	0.018
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.018
nolc1	nucleolar and coiled-body phosphoprotein 1	0.018
phlda1	pleckstrin homology-like domain, family A, member 1	0.018
gpm6aa	glycoprotein M6Aa	0.018
sf3a2	splicing factor 3a, subunit 2	0.018
glud1b	glutamate dehydrogenase 1b	0.018
ilf3a	interleukin enhancer binding factor 3a	0.018
zgc:55695	zgc:55695	0.018
polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.017
cherp	calcium homeostasis endoplasmic reticulum protein	0.017
zgc:111944	zgc:111944	0.017
si:ch211-198a12.6	si:ch211-198a12.6	0.017
tbpl2	TATA box binding protein like 2	0.017
irf2bp2b	interferon regulatory factor 2 binding protein 2b	0.017
cryba4	crystallin, beta A4	0.017
dmrt3a	doublesex and mab-3 related transcription factor 3a	0.017
lrrtm1	leucine rich repeat transmembrane neuronal 1	0.016
plp1a	proteolipid protein 1a	0.016
ecd	ecdysoneless homolog (Drosophila)	0.016
gatm	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	0.016
syt11a	synaptotagmin XIa	0.016
dazl	daz-like gene	0.016
elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	0.016
eif4h	eukaryotic translation initiation factor 4h	0.016
nusap1	nucleolar and spindle associated protein 1	0.016
ewsr1a	Ewing sarcoma breakpoint region 1a	0.016
med14	mediator complex subunit 14	0.016
LOC567405	novel protein similar to vertebrate megakaryocyte-associated tyrosine kinase (MATK)	0.016
dcaf13	ddb1 and cul4 associated factor 13	0.016
calm1a	calmodulin 1a	0.015
vamp1	vesicle-associated membrane protein 1	0.015
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.015
si:dkey-6e12.4	si:dkey-6e12.4	0.015
zgc:112350	zgc:112350	0.015
adcyap1b	adenylate cyclase activating polypeptide 1b	0.015
ankrd13c	ankyrin repeat domain 13C	0.015
ppp3cca	protein phosphatase 3, catalytic subunit, gamma isozyme, a	0.015
phf2	PHD finger protein 2	0.014
si:ch1073-351m12.1	si:ch1073-351m12.1	0.014
ccnk	cyclin K	0.014
tubg1	tubulin, gamma 1	0.014
irf2bp2a	interferon regulatory factor 2 binding protein 2a	0.014
rtn1a	reticulon 1a	0.014
setd8a	SET domain containing (lysine methyltransferase) 8a	0.014
rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.014
snrpb	small nuclear ribonucleoprotein polypeptides B and B1	0.014
gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	0.014
si:ch211-233e16.1	si:ch211-233e16.1	0.014
sae1	SUMO1 activating enzyme subunit 1	0.014
ddr2b	discoidin domain receptor family, member 2b	0.014
prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	0.014
org	oogenesis-related gene	0.014
pcdh2ac	protocadherin 2 alpha c	0.013
hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.013
snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.013
wu:fj40f01	disintegrin and metalloproteinase domain-containing protein 23	0.013
thoc1	THO complex 1	0.013
cpsf2	cleavage and polyadenylation specific factor 2	0.013
evx1	even-skipped homeobox 1	0.013
wnt2	wingless-type MMTV integration site family member 2	0.013
wdr5	WD repeat domain 5	0.013
sp4	sp4 transcription factor	0.013
zgc:77407	zgc:77407	0.013
nfia	nuclear factor I/A	0.013
rbmx	RNA binding motif protein, X-linked	0.013	Rat
prpf40a	PRP40 pre-mRNA processing factor 40 homolog A (yeast)	0.013
eftud2	elongation factor Tu GTP binding domain containing 2	0.012
eif1b	eukaryotic translation initiation factor 1B	0.012
fanca	Fanconi anemia, complementation group A	0.012
cdk8	cyclin-dependent kinase 8	0.012
sephs1	selenophosphate synthetase 1	0.012
ncl	nucleolin	0.012
cstf3	cleavage stimulation factor, 3' pre-RNA, subunit 3	0.012
sycp3l	synaptonemal complex protein 3 like	0.012
aldh18a1	aldehyde dehydrogenase 18 family, member A1	0.012
hnrnpa0l	heterogeneous nuclear ribonucleoprotein A0, like	0.012
zgc:112254	zgc:112254	0.012
inppl1a	inositol polyphosphate phosphatase-like 1a	0.012
fxr2	fragile X mental retardation, autosomal homolog 2	0.012
taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto	0.012
appa	amyloid beta (A4) precursor protein a	0.012
sap130a	Sin3A-associated protein a	0.012
gtf2f1	general transcription factor IIF, polypeptide 1	0.011
lnx2a	ligand of numb-protein X 2a	0.011
kiss1	KiSS-1 metastasis-suppressor	0.011
etv5a	ets variant 5a	0.011
wnt8a	wingless-type MMTV integration site family, member 8a	0.011
syce2	synaptonemal complex central element protein 2	0.011
khdrbs1b	KH domain containing, RNA binding, signal transduction associated 1b	0.011
aldh4a1	aldehyde dehydrogenase 4 family, member A1	0.011
pdcd4a	programmed cell death 4a	0.011
cct2	chaperonin containing TCP1, subunit 2 (beta)	0.011
snrpa	small nuclear ribonucleoprotein polypeptide A	0.011
zgc:113210	zgc:113210	0.011
ss18	synovial sarcoma translocation, chromosome 18 (H. sapiens)	0.011
bub3	BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)	0.011
pnn	pinin, desmosome associated protein	0.011
comta	catechol-O-methyltransferase a	0.011
zgc:110796	zgc:110796	0.011
mef2a	myocyte enhancer factor 2a	0.011
zgc:112257	zgc:112257	0.011
smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.011
pbx1a	pre-B-cell leukemia transcription factor 1a	0.011
dip2c	DIP2 disco-interacting protein 2 homolog C (Drosophila)	0.011
magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.011
dusp7	dual specificity phosphatase 7	0.010
trmt2a	trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.010
srsf2	serine/arginine-rich splicing factor 2	0.010
trim8	tripartite motif-containing 8	0.010
cask	calcium/calmodulin-dependent serine protein kinase	0.010
bop1	block of proliferation 1	0.010
huwe1	HECT, UBA and WWE domain containing 1	0.010
rnd3a	Rho family GTPase 3a	0.010
ctdspl2a	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a	0.010