IMP: Integrative Multi-species Prediction

Danio rerio

9 genes annotated in zebrafish

ribosome biogenesis

A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

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In addition to gene-name show these genes:

Known genes in the process in zebrafishInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ribosome biogenesis"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "ribosome biogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
npm1	nucleophosmin 1	0.922	Mouse
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.636	Yeast
pes	pescadillo	0.506	Human Yeast Mouse
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.417	Yeast
wdr75	WD repeat domain 75	0.386
wdr36	WD repeat domain 36	0.371
noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.355	Yeast
ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.344
polr1a	polymerase (RNA) I polypeptide A	0.302
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.294	Yeast
im:7148292	im:7148292	0.267
gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.230	Yeast Fly
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.205
rpl36a	ribosomal protein L36A	0.195
rps4x	ribosomal protein S4, X-linked	0.194
nip7	nuclear import 7 homolog (S. cerevisiae)	0.170
fbl	fibrillarin	0.164	Yeast
rpl3	ribosomal protein L3	0.158	Yeast
pdcd11	programmed cell death 11	0.149	Yeast
rpl19	ribosomal protein L19	0.141
ctps	CTP synthase	0.139
zgc:56683	zgc:56683	0.129	Yeast
nhp2l1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	0.129	Yeast
diexf	digestive organ expansion factor homolog	0.122
si:dkey-91i17.1	si:dkey-91i17.1	0.117
zgc:76988	zgc:76988	0.115	Yeast
rpsa	ribosomal protein SA	0.107
etf1	eukaryotic translation termination factor 1	0.107
naca	nascent polypeptide-associated complex alpha polypeptide	0.095
rps2	ribosomal protein S2	0.094
polr1c	polymerase (RNA) I polypeptide C	0.088
surf6	surfeit 6	0.088
rpl13	ribosomal protein L13	0.087
rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.086
rps15a	ribosomal protein S15a	0.085
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.084	Yeast Fly
btf3	basic transcription factor 3	0.082
zgc:109888	zgc:109888	0.079	Yeast
bop1	block of proliferation 1	0.074	Human Yeast Mouse
riok2	RIO kinase 2 (yeast)	0.072
rpl7l1	ribosomal protein L7-like 1	0.072
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.069
ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.067	Yeast
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.062
rpf2	ribosome production factor 2 homolog (S. cerevisiae)	0.060	Yeast
tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.057
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.055
rps5	ribosomal protein S5	0.055	Yeast
zgc:162967	zgc:162967	0.055
rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.055
dcaf13	ddb1 and cul4 associated factor 13	0.055	Yeast
wdr12	WD repeat domain 12	0.054	Human Yeast
nol10	nucleolar protein 10	0.052
utp11l	UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)	0.051
rpl15	ribosomal protein L15	0.049
rps11	ribosomal protein S11	0.048	Yeast
zgc:110084	zgc:110084	0.048
tbl3	transducin (beta)-like 3	0.046	Yeast
ahcy	S-adenosylhomocysteine hydrolase	0.045
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.043
mibp2	muscle-specific beta 1 integrin binding protein 2	0.043
rpl6	ribosomal protein L6	0.043	Yeast
zbtb4	zinc finger and BTB domain containing 4	0.041
eif2s1	eukaryotic translation initiation factor 2, subunit 1 alpha	0.040
wdr46	WD repeat domain 46	0.039
rps7	ribosomal protein S7	0.039	Human Yeast
drg1	developmentally regulated GTP binding protein 1	0.038
noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.038	Yeast
rps23	ribosomal protein S23	0.038
mki67ip	mki67 (FHA domain) interacting nucleolar phosphoprotein (human)	0.037
polr1b	polymerase (RNA) I polypeptide B	0.037
znf259	zinc finger protein 259	0.035
rpl7	ribosomal protein L7	0.034	Human
zgc:123327	zgc:123327	0.033
rps25	ribosomal protein S25	0.033
rps3a	ribosomal protein S3A	0.033	Yeast
zgc:77235	zgc:77235	0.032
pabpc1a	poly A binding protein, cytoplasmic 1 a	0.032
rps12	ribosomal protein S12	0.032
nop16	NOP16 nucleolar protein homolog (yeast)	0.031
eif4bb	eukaryotic translation initiation factor 4Bb	0.031
ruvbl1	RuvB-like 1 (E. coli)	0.030
tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.030
nsun5	NOP2/Sun domain family, member 5	0.030
rpl12	ribosomal protein L12	0.029	Yeast
zgc:109901	zgc:109901	0.029	Human
zgc:163091	zgc:163091	0.028
rpl8	ribosomal protein L8	0.027
eef1g	eukaryotic translation elongation factor 1 gamma	0.027
prmt7	protein arginine N-methyltransferase 7	0.026
wdr3	WD repeat domain 3	0.026	Yeast
rpl4	ribosomal protein L4	0.026
nat10	N-acetyltransferase 10	0.026
zgc:55695	zgc:55695	0.025	Human
eif5a2	eukaryotic translation initiation factor 5A2	0.025
pinx1	pin2/trf1-interacting protein 1	0.025
mars	methionine-tRNA synthetase	0.025
rps15	ribosomal protein S15	0.024	Human Yeast
pwp2h	PWP2 periodic tryptophan protein homolog (yeast)	0.024
rpl5b	ribosomal protein L5b	0.024	Human
imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.024
nol6	nucleolar protein family 6 (RNA-associated)	0.023
rpl13a	ribosomal protein L13a	0.023
rps10	ribosomal protein S10	0.022
zgc:65996	zgc:65996	0.022
trmt61a	tRNA methyltransferase 61 homolog A (S. cerevisiae)	0.022
rrs1	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.022
rps14	ribosomal protein S14	0.022
wu:fk33d07	wu:fk33d07	0.022
hars	histidyl-tRNA synthetase	0.022
rpl23	ribosomal protein L23	0.021
polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.021
rpl11	ribosomal protein L11	0.021	Human Yeast
rpl26	ribosomal protein L26	0.020	Human
ppan	peter pan homolog (Drosophila)	0.020	Yeast
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.019
zgc:92872	zgc:92872	0.019
si:ch211-217k17.7	si:ch211-217k17.7	0.019
vars	valyl-tRNA synthetase	0.019
rbm19	RNA binding motif protein 19	0.018	Yeast Worm
prmt3	protein arginine methyltransferase 3	0.018
rps8a	ribosomal protein S8a	0.018	Yeast
tfr1a	transferrin receptor 1a	0.018
il7r	interleukin 7 receptor	0.018
ncl	nucleolin	0.018
ddx55	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	0.018	Yeast
sumo1	SMT3 suppressor of mif two 3 homolog 1 (yeast)	0.017
bms1l	BMS1-like, ribosome assembly protein (yeast)	0.017
rpl27	ribosomal protein L27	0.017
sdad1	SDA1 domain containing 1	0.016
cdv3	carnitine deficiency-associated gene expressed in ventricle 3	0.016
exosc2	exosome component 2	0.016
cirh1a	cirrhosis, autosomal recessive 1A (cirhin)	0.016	Human Yeast
zgc:110664	zgc:110664	0.016
extl3	exostoses (multiple)-like 3	0.016
hspe1	heat shock 10 protein 1 (chaperonin 10)	0.015
rpl10a	ribosomal protein L10a	0.015
zgc:73262	zgc:73262	0.015	Yeast
eif4a1a	eukaryotic translation initiation factor 4A, isoform 1A	0.014
ngdn	neuroguidin, EIF4E binding protein	0.014
top2b	topoisomerase (DNA) II beta	0.014
rsl24d1	ribosomal L24 domain containing 1	0.014
snapc4	small nuclear RNA activating complex, polypeptide 4	0.014
wdr43	WD repeat domain 43	0.013
ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.013
npm3	nucleophosmin/nucleoplasmin, 3	0.013
bysl	bystin-like	0.013	Yeast Mouse
wu:fc27e05	wu:fc27e05	0.013
exosc9	exosome component 9	0.013
eif3d	eukaryotic translation initiation factor 3, subunit D	0.012
imp3	IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.012
nop56	NOP56 ribonucleoprotein homolog	0.012
zgc:92237	zgc:92237	0.012	Human Yeast Mouse
ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	0.011	Yeast
zgc:92868	zgc:92868	0.011
rpl14	ribosomal protein L14	0.011	Human
zgc:112329	zgc:112329	0.011
trmt2a	trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.011
wu:fa99c08	wu:fa99c08	0.011
rps26l	ribosomal protein S26, like	0.011
gtf3aa	general transcription factor IIIAa	0.011
zgc:112350	zgc:112350	0.011
rpl22l1	ribosomal protein L22-like 1	0.011
rps26	ribosomal protein S26	0.010
polr1e	polymerase (RNA) I polypeptide E	0.010
kri1l	KRI1 homolog like	0.010
nop14	NOP14 nucleolar protein homolog (yeast)	0.010