The network for 'transcription from rna polymerase ii promoter' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

transcription from rna polymerase ii promoter

The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

NameDescriptionProbabilityFunc Analog Organism
pha-4Protein PHA-40.999
egl-18Protein EGL-180.998
elt-6Protein ELT-60.989
nhr-67Protein NHR-670.946
egl-13Protein EGL-130.917
nhr-49Protein NHR-490.916
ceh-20Protein CEH-200.910
daf-14Protein DAF-140.840
vab-3Protein VAB-30.833
lin-36Protein LIN-360.802
his-64Protein HIS-640.796
unc-73Protein UNC-730.777
bet-1Protein BET-10.774
mat-3Protein MAT-30.760
set-2Protein SET-20.747
lin-35Protein LIN-350.717
unc-62Protein UNC-620.707
egl-46Protein EGL-460.705
his-16Protein HIS-160.702
his-61Protein HIS-610.697
cnd-1Protein CND-10.689
hlh-1Protein HLH-10.681
nhr-2Protein NHR-20.670
hlh-2Protein HLH-20.667
daf-3Protein DAF-30.666
fkh-2Protein FKH-20.642
nhr-25Protein NHR-250.642
mep-1Protein MEP-10.612
set-1Protein SET-10.605
zip-7Protein ZIP-70.579
unc-37Protein UNC-370.568
flt-1Protein FLT-10.554
eya-1Protein EYA-10.552
his-5Protein HIS-50.543
hbl-1Protein HBL-10.525
lin-12Protein LIN-120.515
unc-86Protein UNC-860.511
hcp-3Protein HCP-30.509
skp-1Protein SKP-10.500
his-1Protein HIS-10.470
lin-53Protein LIN-530.466
rsp-1Protein RSP-10.455
ceh-27Protein CEH-270.454
ztf-2Protein ZTF-20.451
nhr-34Protein NHR-340.445
ldb-1Protein LDB-10.435
unc-43Protein UNC-430.433
his-29Protein HIS-290.422
eri-1Protein ERI-10.404
attf-2Protein ATTF-20.403
lag-1Protein LAG-10.403
pop-1Protein POP-10.403
egl-15Protein EGL-150.398
asb-1Protein ASB-10.394
his-52Protein HIS-520.387
lin-29Protein LIN-290.387
nhr-6Protein NHR-60.383
frm-7Protein FRM-70.377
lin-17Protein LIN-170.376
ten-1Protein TEN-10.374
pry-1Protein PRY-10.372
gei-4Protein GEI-40.370
pdr-1Protein PDR-10.366
ceh-32Protein CEH-320.360
his-50Protein HIS-500.360
F33H1.4Protein F33H1.40.355
hda-1Protein HDA-10.346
ptr-2Protein PTR-20.343
prp-21Protein PRP-210.342
hmg-4Protein HMG-40.341
hda-2Protein HDA-20.340
cki-1Protein CKI-10.338
lin-11Protein LIN-110.335
zfp-1Protein ZFP-10.335
F28C1.1Protein F28C1.10.332
unc-42Protein UNC-420.332
C46F11.4Protein C46F11.40.331
sna-2Protein SNA-20.330
mec-3Protein MEC-30.324
rpn-2Protein RPN-20.322
Y55D9A.2Protein Y55D9A.20.318
ceh-34Protein CEH-340.314
his-31Protein HIS-310.310
wrk-1Protein WRK-10.303
F08B4.7Protein F08B4.70.294
fkh-9Protein FKH-90.293
mab-5Protein MAB-50.291
his-47Protein HIS-470.290
F39B2.1Protein F39B2.10.290
T09B4.5Protein T09B4.50.289
daf-4Protein DAF-40.288
his-39Protein HIS-390.287
let-858Protein LET-8580.287
mom-2Protein MOM-20.285
smp-1Protein SMP-10.284
his-3Protein HIS-30.282
hil-2Protein HIL-20.279
sam-10Protein SAM-100.279
abi-1Protein ABI-10.271
hnd-1Protein HND-10.271
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Danio rerio
NameDescriptionProbabilityFunc Analog Organism
tal1T-cell acute lymphocytic leukemia 10.983
pax2apaired box gene 2a0.967
bmp2bbone morphogenetic protein 2b0.961
tll1tolloid-like 10.953
pitx3paired-like homeodomain transcription factor 30.940
flhfloating head0.936
ndr2nodal-related 20.932
hoxd4ahomeo box D4a0.910
notch1anotch homolog 1a0.903
foxi1forkhead box I10.894
nkx2.2aNK2 transcription factor related 2a0.892
gli1GLI-Kruppel family member 10.882
gata6GATA-binding protein 60.880
shhasonic hedgehog a0.870
dccdeleted in colorectal carcinoma0.866
lhx5LIM homeobox 50.860
kdrlkinase insert domain receptor like0.858
fgf8afibroblast growth factor 8 a0.852
pcnaproliferating cell nuclear antigen0.834
hand2heart and neural crest derivatives expressed transcript 20.830
bmp4bone morphogenetic protein 40.811
otpborthopedia homolog b0.802
snai1bsnail homolog 1b (Drosophila)0.799
mafbav-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)0.798
eya1eyes absent homolog 10.793
foxa3forkhead box A30.793
foxa2forkhead box A20.785
hoxb1bhomeo box B1b0.768
wt1awilms tumor 1a0.754
gata5GATA-binding protein 50.740
tbx16T-box gene 160.735
gro1groucho 10.726
smyhc1slow myosin heavy chain 10.726
tbx20T-box 200.718
prdm1aPR domain containing 1a, with ZNF domain0.710
lhx1aLIM homeobox 1a0.709
pitx2paired-like homeodomain transcription factor 20.673
gata4GATA-binding protein 40.664
fgf3fibroblast growth factor 30.663
ventventral expressed homeobox0.620
klf4Kruppel-like factor 40.613
znf703zinc finger protein 7030.605
irx7iroquois homeobox protein 70.599
tfap2atranscription factor AP-2 alpha0.595
notch3notch homolog 30.590
emx3empty spiracles homeobox 30.588
nkx2.1bNK2 homeobox 1b0.582
mab21l2mab-21-like 20.564
dlx1adistal-less homeobox gene 1a0.561
gbx2gastrulation brain homeo box 20.560
spry4sprouty (Drosophila) homolog 40.556
crabp2acellular retinoic acid binding protein 2, a0.556
fgfr4fibroblast growth factor receptor 40.553
tbx5aT-box 5a0.549
dlx2adistal-less homeobox gene 2a0.548
tcf7l2transcription factor 7-like 2 (T-cell specific, HMG-box)0.547
nfkbiabnuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b0.542
tgfb3transforming growth factor, beta 30.540
dkk1bdickkopf 1b0.536
epha4aeph receptor A4a0.528
sim1asingle-minded homolog 1a (Drosophila)0.512
ctgfconnective tissue growth factor0.510
nadl1.1neural adhesion molecule L1.10.508
kitakit receptor a0.499
sox10SRY-box containing gene 100.491
zic2azic family member 2 (odd-paired homolog, Drosophila), a0.490
ptf1apancreas specific transcription factor, 1a0.488
junjun proto-oncogene0.485
sox1aSRY-box containing gene 1a0.483
wnt8awingless-type MMTV integration site family, member 8a0.480
smarca4SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 40.479
ascl1aachaete-scute complex-like 1a (Drosophila)0.475
dlx3bdistal-less homeobox gene 3b0.471
hnf1baHNF1 homeobox Ba0.464
notch1bnotch homolog 1b0.461
sumo3aSMT3 suppressor of mif two 3 homolog 3a0.451
sox32SRY-box containing gene 320.451
raraaretinoic acid receptor, alpha a0.448
socs3asuppressor of cytokine signaling 3a0.446
tp53tumor protein p530.445
jag1bjagged 1b0.445
smad5MAD homolog 5 (Drosophila)0.445
osr1odd-skipped related 1 (Drosophila)0.437
jag2jagged 20.436
col2a1acollagen type II, alpha-1a0.435
mllmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)0.435
sox2SRY-box containing gene 20.434
prox1prospero-related homeobox gene 10.433
hoxb2ahomeo box B2a0.427
lhx1bLIM homeobox 1b0.422
six1bsine oculis homeobox homolog 1b0.417
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Drosophila melanogaster
NameDescriptionProbabilityFunc Analog Organism
EgfrEpidermal growth factor receptor0.998
Snr1Snf5-related 10.993
cicubitus interruptus0.990
EcREcdysone receptor0.988
slmbsupernumerary limbs0.986
slp1sloppy paired 10.985
toytwin of eyeless0.983
MED17Mediator complex subunit 170.982
MED15Mediator complex subunit 150.970
pr-set7CG3307 gene product from transcript CG3307-RC0.967
ftz-f1ftz transcription factor 10.967
Fmr1CG6203 gene product from transcript CG6203-RC0.961
Abd-BAbdominal B0.961
eyaeyes absent0.953
Ras85DRas oncogene at 85D0.951
opaodd paired0.949
ash1absent, small, or homeotic discs 10.940
TorTarget of rapamycin0.937
Akt1CG4006 gene product from transcript CG4006-RA0.927
eastenhanced adult sensory threshold0.924
lolalongitudinals lacking0.923
InRInsulin-like receptor0.918
Pi3K92ECG4141 gene product from transcript CG4141-RB0.918
abd-Aabdominal A0.914
spn-Aspindle A0.913
CTCFCG8591 gene product from transcript CG8591-RA0.912
MED6Mediator complex subunit 60.909
eveeven skipped0.897
dcodiscs overgrown0.897
spensplit ends0.892
sosine oculis0.884
Pka-C1cAMP-dependent protein kinase 10.880
vvlventral veins lacking0.869
Mef2Myocyte enhancer factor 20.860
MED11Mediator complex subunit 110.854
fl(2)dfemale lethal d0.852
CkIIalphaCasein kinase II alpha subunit0.847
Su(H)Suppressor of Hairless0.841
CG32685CG32685 gene product from transcript CG32685-RC0.839
Nf-YCNuclear factor Y-box C0.833
bowlbrother of odd with entrails limited0.832
HLHm7E(spl) region transcript m70.828
emsempty spiracles0.822
osaCG7467 gene product from transcript CG7467-RD0.821
Rca1Regulator of cyclin A10.811
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Homo sapiens
NameDescriptionProbabilityFunc Analog Organism
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Mus musculus
NameDescriptionProbabilityFunc Analog Organism
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Rattus norvegicus
NameDescriptionProbabilityFunc Analog Organism
Junbjun B proto-oncogene0.979
Dusp1dual specificity phosphatase 10.978
JunJun oncogene0.883
CebpbCCAAT/enhancer binding protein (C/EBP), beta0.872
Ppp1r15aprotein phosphatase 1, regulatory (inhibitor) subunit 15A0.849
FosFBJ osteosarcoma oncogene0.837
Nr4a3nuclear receptor subfamily 4, group A, member 30.800
Irs1insulin receptor substrate 10.764
Jak2Janus kinase 20.763
Zfp36zinc finger protein 360.749
Metmet proto-oncogene0.700
Atf3activating transcription factor 30.668
Egr1early growth response 10.654
Nr4a1nuclear receptor subfamily 4, group A, member 10.622
Smad1SMAD family member 10.613
Aqp2aquaporin 2 (collecting duct)0.590
Btg2BTG family, member 20.584
Klf13Kruppel-like factor 130.566
Ageradvanced glycosylation end product-specific receptor0.558
Ndst1N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 10.548
Jundjun D proto-oncogene0.547
Sp1Sp1 transcription factor0.544
Lad1ladinin 10.522
Sfpqsplicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)0.518
Hes1hairy and enhancer of split 1 (Drosophila)0.517
Tgfbr2transforming growth factor, beta receptor II0.514
Errfi1ERBB receptor feedback inhibitor 10.511
Pax8paired box 80.511
Tcf4transcription factor 40.510
Erbb4v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)0.461
Wbp11WW domain binding protein 110.450
Foxe3forkhead box E30.432
Nfkbianuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha0.426
Purbpurine rich element binding protein B0.424
Stat6signal transducer and activator of transcription 60.422
Tceb3transcription elongation factor B (SIII), polypeptide 30.414
Nr4a2nuclear receptor subfamily 4, group A, member 20.410
Lhx1LIM homeobox 10.405
Rararetinoic acid receptor, alpha0.403
Ier3immediate early response 30.402
Psmc1proteasome (prosome, macropain) 26S subunit, ATPase, 10.402
S100a9S100 calcium binding protein A90.398
Barhl1BarH-like homeobox 10.395
Pacs1phosphofurin acidic cluster sorting protein 10.393
Ier2immediate early response 20.392
Foxa3forkhead box A30.387
Arntaryl hydrocarbon receptor nuclear translocator0.385
Psmc2proteasome (prosome, macropain) 26S subunit, ATPase 20.384
Nfyanuclear transcription factor-Y alpha0.377
Ngfrnerve growth factor receptor (TNFR superfamily, member 16)0.377
Neurog1neurogenin 10.373
Klf9Kruppel-like factor 90.373
Grin2bglutamate receptor, ionotropic, N-methyl D-aspartate 2B0.372
Ube2g1ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast)0.372
Dusp6dual specificity phosphatase 60.370
Mapk14mitogen activated protein kinase 140.367
Socs7suppressor of cytokine signaling 70.366
Pou3f2POU class 3 homeobox 20.365
Fgfr2fibroblast growth factor receptor 20.363
Ifrd1interferon-related developmental regulator 10.362
Slc22a6solute carrier family 22 (organic anion transporter), member 60.358
Adcy5adenylate cyclase 50.358
Nr2f6nuclear receptor subfamily 2, group F, member 60.350
Tgfbr3transforming growth factor, beta receptor III0.350
Defb1defensin beta 10.350
P2rx3purinergic receptor P2X, ligand-gated ion channel, 30.345
Bmp3bone morphogenetic protein 30.344
Shox2short stature homeobox 20.339
Robo1roundabout homolog 1 (Drosophila)0.336
Myl6lmyosin, light polypeptide 6, alkali, smooth muscle and non-muscle-like0.332
Tcfe2atranscription factor E2a0.330
Rxrbretinoid X receptor beta0.323
Dctn1dynactin 10.323
Itgamintegrin, alpha M0.320
Litaflipopolysaccharide-induced TNF factor0.320
Clcn5chloride channel 50.317
Cxxc4CXXC finger 40.316
Hoxb7homeo box B70.310
Ptafrplatelet-activating factor receptor0.309
Mov10Moloney leukemia virus 100.307
Clpscolipase, pancreatic0.306
Crybb3crystallin, beta B30.305
Stat3signal transducer and activator of transcription 30.303
Tnfrsf1atumor necrosis factor receptor superfamily, member 1a0.303
Creb1cAMP responsive element binding protein 10.301
Nr1d2nuclear receptor subfamily 1, group D, member 20.300
Ptpn1protein tyrosine phosphatase, non-receptor type 10.300
Adcy4adenylate cyclase 40.298
Ascl2achaete-scute complex homolog 2 (Drosophila)0.298
Homer1homer homolog 1 (Drosophila)0.298
Klf2Kruppel-like factor 2 (lung)0.298
Id3inhibitor of DNA binding 30.297
Fgfr1Fibroblast growth factor receptor 10.295
Ssrp1structure specific recognition protein 10.290
Igfbp5insulin-like growth factor binding protein 50.286
Phkg1phosphorylase kinase, gamma 10.285
Sbk1SH3-binding domain kinase 10.285
Id1inhibitor of DNA binding 10.284
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Saccharomyces cerevisiae
NameDescriptionProbabilityFunc Analog Organism