The network for 'regulation of transcription from rna polymerase ii promoter' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

regulation of transcription from rna polymerase ii promoter

Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.

NameDescriptionProbabilityFunc Analog Organism
egl-18Protein EGL-180.998
pha-4Protein PHA-40.993
elt-6Protein ELT-60.981
zip-7Protein ZIP-70.955
nhr-49Protein NHR-490.928
vab-3Protein VAB-30.902
nhr-67Protein NHR-670.889
egl-13Protein EGL-130.885
lin-35Protein LIN-350.876
hbl-1Protein HBL-10.874
his-16Protein HIS-160.850
unc-73Protein UNC-730.810
lin-17Protein LIN-170.806
lin-36Protein LIN-360.803
fkh-2Protein FKH-20.803
hlh-2Protein HLH-20.801
nhr-2Protein NHR-20.786
eya-1Protein EYA-10.782
gei-4Protein GEI-40.780
egl-46Protein EGL-460.765
unc-42Protein UNC-420.760
unc-62Protein UNC-620.731
his-1Protein HIS-10.725
ceh-20Protein CEH-200.715
his-64Protein HIS-640.672
daf-14Protein DAF-140.641
nhr-34Protein NHR-340.635
F39B2.1Protein F39B2.10.631
his-61Protein HIS-610.607
tax-4Protein TAX-40.593
CELE_Y106G6H.6Protein Y106G6H.60.589
hlh-1Protein HLH-10.585
mab-5Protein MAB-50.571
mdt-8Protein MDT-80.549
ten-1Protein TEN-10.532
egl-15Protein EGL-150.531
mat-3Protein MAT-30.530
hcp-3Protein HCP-30.524
ceh-16Protein CEH-160.521
egl-44Protein EGL-440.514
vab-1Protein VAB-10.511
bet-1Protein BET-10.501
lin-29Protein LIN-290.500
lin-11Protein LIN-110.495
set-2Protein SET-20.491
hif-1Protein HIF-10.484
ceh-27Protein CEH-270.482
unc-37Protein UNC-370.466
nhr-25Protein NHR-250.456
pry-1Protein PRY-10.449
attf-2Protein ATTF-20.447
daf-4Protein DAF-40.444
frm-7Protein FRM-70.444
Y102A11A.6Protein Y102A11A.60.434
rad-26Protein RAD-260.403
flh-2Protein FLH-20.402
ztf-2Protein ZTF-20.394
his-5Protein HIS-50.391
dma-1Protein DMA-10.389
cnd-1Protein CND-10.379
daf-11Protein DAF-110.377
hda-2Protein HDA-20.371
his-42Protein HIS-420.368
unc-43Protein UNC-430.364
hnd-1Protein HND-10.356
rskn-2Protein RSKN-20.356
lin-1Protein LIN-10.356
flt-1Protein FLT-10.356
ceh-13Protein CEH-130.351
sur-2Protein SUR-20.344
eri-1Protein ERI-10.343
capg-2Protein CAPG-20.341
daf-1Protein DAF-10.341
his-50Protein HIS-500.340
F53F10.2Protein F53F10.20.338
C46F11.4Protein C46F11.40.336
egl-5Protein EGL-50.329
his-48Protein HIS-480.326
akt-2Protein AKT-20.326
mep-1Protein MEP-10.324
his-68Protein HIS-680.322
lag-1Protein LAG-10.322
F33H1.4Protein F33H1.40.321
abi-1Protein ABI-10.318
F28B3.1Protein F28B3.10.316
sas-5Protein SAS-50.314
brp-1Protein BRP-10.313
sna-2Protein SNA-20.313
pqn-44Protein PQN-440.309
syg-2Protein SYG-20.308
qua-1Protein QUA-10.297
F09F9.4Protein F09F9.40.289
ceh-18Protein CEH-180.282
set-1Protein SET-10.276
cam-1Protein CAM-10.275
his-51Protein HIS-510.274
his-29Protein HIS-290.273
ceh-38Protein CEH-380.272
cfim-2Protein CFIM-20.269
T09B4.5Protein T09B4.50.266
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Danio rerio
NameDescriptionProbabilityFunc Analog Organism
notch1anotch homolog 1a0.998
shhasonic hedgehog a0.996
hand2heart and neural crest derivatives expressed transcript 20.996
ndr2nodal-related 20.991
chdchordin0.985
ntlano tail a0.974
foxa3forkhead box A30.972
foxa2forkhead box A20.971
spry4sprouty (Drosophila) homolog 40.968
hoxb1bhomeo box B1b0.963
bmp2bbone morphogenetic protein 2b0.961
otpborthopedia homolog b0.958
bmp4bone morphogenetic protein 40.957
pitx3paired-like homeodomain transcription factor 30.947
lhx1aLIM homeobox 1a0.944
hnf1baHNF1 homeobox Ba0.942
mllmyeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)0.939
lft1lefty10.930
zic2azic family member 2 (odd-paired homolog, Drosophila), a0.926
myod1myogenic differentiation 10.900
runx2brunt-related transcription factor 2b0.889
ventventral expressed homeobox0.872
tll1tolloid-like 10.867
hoxc4ahomeo box C4a0.861
flhfloating head0.855
cdx4caudal type homeo box transcription factor 40.836
fgfr4fibroblast growth factor receptor 40.834
etv5bets variant 5b0.832
twist3twist30.829
nkx2.2aNK2 transcription factor related 2a0.829
tbx16T-box gene 160.823
dlx2adistal-less homeobox gene 2a0.817
eya1eyes absent homolog 10.812
jag2jagged 20.811
lhx5LIM homeobox 50.811
bmpr1aabone morphogenetic protein receptor, type 1aa0.808
hoxa11ahomeo box A11a0.791
gata1aGATA binding protein 1a0.789
pcdh18bprotocadherin 18b0.778
gata6GATA-binding protein 60.772
gscgoosecoid0.765
inspreproinsulin0.763
sox19aSRY-box containing gene 19a0.751
prox1prospero-related homeobox gene 10.751
dnmt7DNA (cytosine-5-)-methyltransferase 70.742
crabp2acellular retinoic acid binding protein 2, a0.741
neo1neogenin 10.737
gbx2gastrulation brain homeo box 20.728
irx7iroquois homeobox protein 70.717
dkk1bdickkopf 1b0.714
foxi1forkhead box I10.694
dusp6dual specificity phosphatase 60.677
fgf3fibroblast growth factor 30.675
tbx6T-box gene 60.669
twist1atwist1a0.669
tal1T-cell acute lymphocytic leukemia 10.668
wt1awilms tumor 1a0.664
epha4aeph receptor A4a0.658
snai1bsnail homolog 1b (Drosophila)0.650
lef1lymphocyte enhancer binding factor 10.637
junbjun B proto-oncogene0.631
pkd2polycystic kidney disease 20.623
crestincrestin0.615
klf4Kruppel-like factor 40.609
nkx2.1bNK2 homeobox 1b0.607
sox32SRY-box containing gene 320.606
spawsouthpaw0.605
fzd7afrizzled homolog 7a0.600
six4bsine oculis homeobox homolog 4b0.600
osr1odd-skipped related 1 (Drosophila)0.594
ptf1apancreas specific transcription factor, 1a0.588
cebpbCCAAT/enhancer binding protein (C/EBP), beta0.587
eomesaeomesodermin homolog a0.584
atoh1batonal homolog 1b0.579
hoxa9ahomeo box A9a0.578
notch3notch homolog 30.578
nog1noggin 10.577
gbx1gastrulation brain homeobox 10.576
raraaretinoic acid receptor, alpha a0.566
hoxc6ahomeo box C6a0.564
fgf8afibroblast growth factor 8 a0.560
evx1even-skipped homeobox 10.558
mab21l2mab-21-like 20.553
meis3myeloid ecotropic viral integration site 30.551
ascl1aachaete-scute complex-like 1a (Drosophila)0.550
spns2spinster homolog 2 (Drosophila)0.550
ctsl1bcathepsin L, 1 b0.549
fezf2FEZ family zinc finger 20.548
isl1islet10.545
gli1GLI-Kruppel family member 10.543
hoxb2ahomeo box B2a0.542
sox17SRY-box containing gene 170.542
gata4GATA-binding protein 40.540
hoxd11ahomeo box D11a0.538
nrg2aneuregulin 2a0.537
cdh1cadherin 1, epithelial0.531
traf4atnf receptor-associated factor 4a0.527
plagl2pleiomorphic adenoma gene-like 20.521
gata2aGATA-binding protein 2a0.508
tfap2btranscription factor AP-2 beta0.507
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Drosophila melanogaster
NameDescriptionProbabilityFunc Analog Organism
cicubitus interruptus1.000
UbxUltrabithorax1.000
EcREcdysone receptor0.999
panpangolin0.999
sdscalloped0.998
MED15Mediator complex subunit 150.998
DllDistal-less0.996
hephemipterous0.995
PcPolycomb0.995
Abd-BAbdominal B0.995
Ras85DRas oncogene at 85D0.994
salmspalt major0.994
domdomino0.993
shnschnurri0.993
Snr1Snf5-related 10.992
slp1sloppy paired 10.992
eygeyegone0.991
Sin3ACG8815 gene product from transcript CG8815-RC0.990
gtgiant0.990
hthhomothorax0.989
Su(H)Suppressor of Hairless0.989
Pp2B-14DProtein phosphatase 2B at 14D0.986
sosine oculis0.986
gbbglass bottom boat0.986
E(spl)Enhancer of split0.984
MadMothers against dpp0.984
CkIIalphaCasein kinase II alpha subunit0.984
BRWD3CG31132 gene product from transcript CG31132-RA0.984
nubnubbin0.984
dppdecapentaplegic0.984
brmbrahma0.983
lolalongitudinals lacking0.982
AntpAntennapedia0.981
wgwingless0.977
Akt1CG4006 gene product from transcript CG4006-RA0.977
HLHm7E(spl) region transcript m70.976
slmbsupernumerary limbs0.974
dcodiscs overgrown0.973
enengrailed0.972
mormoira0.971
AxnAxin0.969
cnccap-n-collar0.969
kaykayak0.969
rhorhomboid0.968
EgfrEpidermal growth factor receptor0.968
rprreaper0.967
kiskismet0.966
InRInsulin-like receptor0.963
exdextradenticle0.958
Doc2Dorsocross20.954
SerSerrate0.952
Eps-15Epidermal growth factor receptor pathway substrate clone 150.952
abd-Aabdominal A0.952
araaraucan0.950
PclPolycomblike0.949
eyeyeless0.946
alaristaless0.945
LamLamin0.945
SceSex combs extra0.944
foxoforkhead box, sub-group O0.943
ktokohtalo0.940
nkdnaked cuticle0.940
ftz-f1ftz transcription factor 10.939
NNotch0.938
Pka-C1cAMP-dependent protein kinase 10.938
gppgrappa0.936
Rpd3CG7471 gene product from transcript CG7471-RA0.929
sggshaggy0.926
runrunt0.925
OptixCG18455 gene product from transcript CG18455-RA0.924
esgescargot0.923
opaodd paired0.922
toytwin of eyeless0.920
hephhephaestus0.920
TolloCG6890 gene product from transcript CG6890-RA0.919
kluklumpfuss0.919
ChroChromator0.919
knknot0.915
ushu-shaped0.914
grngrain0.906
tintinman0.904
trxtrithorax0.904
cswcorkscrew0.900
p38bCG7393 gene product from transcript CG7393-RA0.900
twstwins0.898
auxauxillin0.895
dshdishevelled0.893
hbhunchback0.891
dacdachshund0.887
DadDaughters against dpp0.887
dadaughterless0.884
prdpaired0.884
dsxdoublesex0.882
brkbrinker0.880
Taf1TBP-associated factor 10.877
stisticky0.876
MED17Mediator complex subunit 170.876
ababrupt0.875
GugGrunge0.874
btdbuttonhead0.874
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Homo sapiens
NameDescriptionProbabilityFunc Analog Organism
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Mus musculus
NameDescriptionProbabilityFunc Analog Organism
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Rattus norvegicus
NameDescriptionProbabilityFunc Analog Organism
JunJun oncogene0.960
Dusp1dual specificity phosphatase 10.927
Ppp1r15aprotein phosphatase 1, regulatory (inhibitor) subunit 15A0.886
Btg2BTG family, member 20.878
Junbjun B proto-oncogene0.876
CebpbCCAAT/enhancer binding protein (C/EBP), beta0.831
Rararetinoic acid receptor, alpha0.812
Tgfbr2transforming growth factor, beta receptor II0.776
FosFBJ osteosarcoma oncogene0.775
Zfp36zinc finger protein 360.757
Nr4a3nuclear receptor subfamily 4, group A, member 30.735
Ndst1N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 10.685
Nr4a1nuclear receptor subfamily 4, group A, member 10.640
Wbp11WW domain binding protein 110.605
Fgfr1Fibroblast growth factor receptor 10.599
Nfibnuclear factor I/B0.590
Ciitaclass II, major histocompatibility complex, transactivator0.589
Hes1hairy and enhancer of split 1 (Drosophila)0.558
Dctn1dynactin 10.555
CebpaCCAAT/enhancer binding protein (C/EBP), alpha0.537
DbpD site of albumin promoter (albumin D-box) binding protein0.533
Purbpurine rich element binding protein B0.514
Smad1SMAD family member 10.501
Eporerythropoietin receptor0.501
Tcfe2atranscription factor E2a0.499
Ier2immediate early response 20.494
Grin2bglutamate receptor, ionotropic, N-methyl D-aspartate 2B0.479
Nr1d2nuclear receptor subfamily 1, group D, member 20.478
Erbb4v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)0.455
Adarb2adenosine deaminase, RNA-specific, B20.436
Atf3activating transcription factor 30.435
Hsd3b6hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 60.431
Nr2f6nuclear receptor subfamily 2, group F, member 60.423
Shox2short stature homeobox 20.418
Cntfrciliary neurotrophic factor receptor0.416
Tceb3transcription elongation factor B (SIII), polypeptide 30.410
Ahraryl hydrocarbon receptor0.406
Hivep2human immunodeficiency virus type I enhancer binding protein 20.403
Dlg1discs, large homolog 1 (Drosophila)0.402
Umoduromodulin0.395
Dnaja2DnaJ (Hsp40) homolog, subfamily A, member 20.394
Aqp2aquaporin 2 (collecting duct)0.392
Psmb3proteasome (prosome, macropain) subunit, beta type 30.383
Icam1intercellular adhesion molecule 10.372
Metmet proto-oncogene0.365
Robo1roundabout homolog 1 (Drosophila)0.363
Synposynaptopodin0.360
Id1inhibitor of DNA binding 10.359
Hoxb7homeo box B70.358
Tp53tumor protein p530.355
Klf13Kruppel-like factor 130.355
Arf4ADP-ribosylation factor 40.354
Foxe3forkhead box E30.353
Mov10Moloney leukemia virus 100.343
Bmp6bone morphogenetic protein 60.343
Creb1cAMP responsive element binding protein 10.333
Pip4k2bphosphatidylinositol-5-phosphate 4-kinase, type II, beta0.333
Scaf1SR-related CTD-associated factor 10.331
Smad6SMAD family member 60.328
Clpscolipase, pancreatic0.323
Usf2upstream transcription factor 2, c-fos interacting0.322
Hdac2histone deacetylase 20.322
Socs7suppressor of cytokine signaling 70.319
Dll3delta-like 3 (Drosophila)0.314
Prph2peripherin 20.312
Ifrd1interferon-related developmental regulator 10.308
Arntaryl hydrocarbon receptor nuclear translocator0.308
Adcy5adenylate cyclase 50.308
Egr1early growth response 10.301
Nfkb1nuclear factor of kappa light polypeptide gene enhancer in B-cells 10.295
Sp1Sp1 transcription factor0.295
Dusp6dual specificity phosphatase 60.294
Chrna9cholinergic receptor, nicotinic, alpha 90.293
Psmc1proteasome (prosome, macropain) 26S subunit, ATPase, 10.287
Igfbp5insulin-like growth factor binding protein 50.280
Tcf4transcription factor 40.279
Homer3homer homolog 3 (Drosophila)0.277
Mef2dmyocyte enhancer factor 2D0.277
Sox13SRY (sex determining region Y)-box 130.277
Runx1runt-related transcription factor 10.271
Ehmt2euchromatic histone lysine N-methyltransferase 20.270
MdficMyoD family inhibitor domain containing0.267
Ptprkprotein tyrosine phosphatase, receptor type, K, extracellular region0.265
RestRE1-silencing transcription factor0.265
Arhgap28Rho GTPase activating protein 280.264
Barhl1BarH-like homeobox 10.261
Mmp14matrix metallopeptidase 14 (membrane-inserted)0.261
Slc26a5solute carrier family 26, member 5 (prestin)0.256
Ngfrnerve growth factor receptor (TNFR superfamily, member 16)0.255
Cand1cullin-associated and neddylation-dissociated 10.253
Clockclock homolog (mouse)0.252
Wnt2bwingless-type MMTV integration site family, member 2B0.251
Bat3HLA-B-associated transcript 30.251
SeboxSEBOX homeobox0.250
Chd1chromodomain helicase DNA binding protein 10.250
Ubtfupstream binding transcription factor, RNA polymerase I0.246
Tceb2transcription elongation factor B (SIII), polypeptide 20.246
Akt1v-akt murine thymoma viral oncogene homolog 10.244
Trim47tripartite motif-containing 470.243
Nr1d1nuclear receptor subfamily 1, group D, member 10.243
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Saccharomyces cerevisiae
NameDescriptionProbabilityFunc Analog Organism
HHT1Hht1p1.000
SIN3Sin3p1.000
SPT8Spt8p0.999
GCN5Gcn5p0.999
GAL11Gal11p0.999
RGR1Rgr1p0.998
MED1Med1p0.998
HOG1Hog1p0.998
RPD3Rpd3p0.996
SPT16Spt16p0.995
MED2Med2p0.994
RIM101Rim101p0.993
ADA2Ada2p0.991
SRB4Srb4p0.991
ROX3Rox3p0.987
TAF5Taf5p0.986
TAF14Taf14p0.986
GLC7Glc7p0.986
SIN4Sin4p0.984
RTF1Rtf1p0.982
FKH2Fkh2p0.981
RPN4Rpn4p0.981
CHD1Chd1p0.980
GLN3Gln3p0.980
TRA1Tra1p0.979
SNF5Snf5p0.978
AFT1Aft1p0.977
SWI6Swi6p0.975
SPT15Spt15p0.974
SSN3Ssn3p0.974
TAF10Taf10p0.973
CSE2Cse2p0.967
PGD1Pgd1p0.966
MSN2Msn2p0.965
CYC8Cyc8p0.962
RAP1Rap1p0.954
HDA1Hda1p0.952
HTB1Htb1p0.950
KDX1Kdx1p0.949
SNF1Snf1p0.948
SPT5Spt5p0.948
CTR9Ctr9p0.947
TUP1Tup1p0.947
YAK1Yak1p0.946
HHF1Hhf1p0.940
URE2Ure2p0.935
SPT3Spt3p0.935
RPO21Rpo21p0.934
YTA7Yta7p0.934
SGF73Sgf73p0.934
SUM1Sum1p0.931
NRG1Nrg1p0.928
SET3Set3p0.925
RSC4Rsc4p0.925
SRB8Srb8p0.924
MET4Met4p0.922
ARG81Arg81p0.920
TAF12Taf12p0.919
SSN8Ssn8p0.917
RXT2Rxt2p0.914
HTB2Htb2p0.908
PAF1Paf1p0.903
GCR2Gcr2p0.901
TFG1Tfg1p0.901
NUT2Nut2p0.900
SSN2Ssn2p0.897
MED6Med6p0.895
SRB6Srb6p0.893
SAS3Sas3p0.886
HIR2Hir2p0.883
TAF9Taf9p0.883
SNF6Snf6p0.880
RPT6Rpt6p0.876
PHO23Pho23p0.875
HFI1Hfi1p0.871
MIG1Mig1p0.870
SPT20Spt20p0.870
FKH1Fkh1p0.869
UBP3Ubp3p0.869
ARP8Arp8p0.861
SRB5Srb5p0.860
CDC28Cdc28p0.860
FLO8Flo8p0.853
EAF3Eaf3p0.848
NUT1Nut1p0.847
HTA2Hta2p0.847
RCO1Rco1p0.844
SWI4Swi4p0.841
SOH1Soh1p0.840
HHT2Hht2p0.840
CDC73Cdc73p0.828
SWI1Swi1p0.826
HTZ1Htz1p0.825
IXR1Ixr1p0.820
DST1Dst1p0.820
MOT1Mot1p0.815
HTA1Hta1p0.814
TFB2Tfb2p0.813
NHP6ANhp6ap0.813
SET2Set2p0.809