The network for 'rna modification' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

rna modification

The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

NameDescriptionProbabilityFunc Analog Organism
ELP3Elp3p1.000
YNL022Chypothetical protein1.000
IKI3Iki3p0.999
DEG1Deg1p0.999
PUS7Pus7p0.999
NCS2Ncs2p0.999
IME4Ime4p0.999
CBF5Cbf5p0.997
IKI1Iki1p0.997
NCS6Ncs6p0.997
ELP6Elp6p0.996
ELP4Elp4p0.995
URM1Urm1p0.995
KTI12Kti12p0.994
MUM2Mum2p0.992
PUS4Pus4p0.991
ELP2Elp2p0.986
RRP6Rrp6p0.983
KTI11Kti11p0.980
TRM1Trm1p0.973
PUS1Pus1p0.961
PCC1Pcc1p0.952
TRM11Trm11p0.948
NRD1Nrd1p0.922
MTO1Mto1p0.918
TRM9Trm9p0.906
UBA4Uba4p0.881
NAB3Nab3p0.849
SUA5Sua5p0.838
NHP2Nhp2p0.818
TGS1Tgs1p0.816
TRM8Trm8p0.782
DPH2Dph2p0.776
MEX67Mex67p0.760
YHR003Chypothetical protein0.756
SMM1Smm1p0.737
SLM3Slm3p0.693
TRM12Trm12p0.673
TRM10Trm10p0.634
YCR051Whypothetical protein0.633
YIL096Chypothetical protein0.627
MSS1Mss1p0.609
ABP140Abp140p0.604
MER1Mer1p0.595
TAD2Tad2p0.541
RRP8Rrp8p0.529
YBL081Whypothetical protein0.508
TRM13Trm13p0.495
RRP12Rrp12p0.485
CEG1Ceg1p0.450
DUS1Dus1p0.440
TAF8Taf8p0.438
TUM1Tum1p0.430
TRM112Trm112p0.429
TPA1Tpa1p0.421
SWM2Swm2p0.407
YML082Whypothetical protein0.400
PUS6Pus6p0.395
YGR210Chypothetical protein0.391
RIM2Rim2p0.388
RTT10Rtt10p0.375
YPL245Whypothetical protein0.368
TSR1Tsr1p0.361
LOS1Los1p0.353
TRM5Trm5p0.350
HRR25Hrr25p0.340
DUS4Dus4p0.340
RNH70Rnh70p0.339
ERC1Erc1p0.331
DUS3Dus3p0.327
YGR012Whypothetical protein0.325
YNL035Chypothetical protein0.322
POC4Poc4p0.321
NFS1Nfs1p0.317
TRM82Trm82p0.297
YBR242Whypothetical protein0.294
RPA34Rpa34p0.286
TRM2Trm2p0.280
DFR1Dfr1p0.280
YMR259Chypothetical protein0.279
YKL027Whypothetical protein0.273
TAD3Tad3p0.272
NMD5Nmd5p0.272
YMR310Chypothetical protein0.268
GFD2Gfd2p0.267
PNO1Pno1p0.266
TRS31Trs31p0.263
KAE1Kae1p0.260
RIT1Rit1p0.249
RRB1Rrb1p0.246
LEU9Leu9p0.235
CCM1Ccm1p0.235
YJR003Chypothetical protein0.225
GBP2Gbp2p0.224
MOD5Mod5p0.222
YBR271Whypothetical protein0.222
BER1Ber1p0.221
POP8Pop8p0.220
PUS2Pus2p0.219
NBP35Nbp35p0.219
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Caenorhabditis elegans
NameDescriptionProbabilityFunc Analog Organism
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Danio rerio
NameDescriptionProbabilityFunc Analog Organism
pdlim3bPDZ and LIM domain 3b0.625
pdlim7PDZ and LIM domain 70.385
csnk1dbcasein kinase 1, delta b0.363
qtrt1queuine tRNA-ribosyltransferase 10.233
csnk1dacasein kinase 1, delta a0.226
kidins220bkinase D-interacting substrate of 220b0.212
fanclFanconi anemia, complementation group L0.210
zgc:113210zgc:1132100.210
plcb3phospholipase C, beta 3 (phosphatidylinositol-specific)0.205
mapk14amitogen-activated protein kinase 14a0.167
golt1bgolgi transport 1 homolog B (S. cerevisiae)0.159
eif3beukaryotic translation initiation factor 3, subunit B0.144
aldocbaldolase C, fructose-bisphosphate, b0.142
nedd1neural precursor cell expressed, developmentally down-regulated 10.127
prmt3protein arginine methyltransferase 30.121
nop58NOP58 ribonucleoprotein homolog (yeast)0.113
zgc:101768zgc:1017680.101
ndrg4N-myc downstream regulated gene 40.101
im:7163520im:71635200.096
si:dkey-177p2.6si:dkey-177p2.60.092
prmt7protein arginine N-methyltransferase 70.090
extl3exostoses (multiple)-like 30.086
prmt5protein arginine methyltransferase 50.081
nol10nucleolar protein 100.080
ldhdlactate dehydrogenase D0.080
limk2LIM domain kinase 20.078
znrd1zinc ribbon domain containing 10.076
rcc1regulator of chromosome condensation 10.074
qtrtd1queuine tRNA-ribosyltransferase domain containing 10.073
mettl2amethyltransferase like 2A0.067
zgc:56457zgc:564570.065
si:ch211-198a12.6si:ch211-198a12.60.064
vmp1vacuole membrane protein 10.064
unc45aunc-45 homolog A (C. elegans)0.061
myh6myosin, heavy polypeptide 6, cardiac muscle, alpha0.061
ppp3caprotein phosphatase 3, catalytic subunit, alpha isozyme0.059
phf23bPHD finger protein 23b0.058
dag1dystroglycan 10.058
si:ch211-196f5.1si:ch211-196f5.10.056
mef2cbmyocyte enhancer factor 2cb0.056
chukconserved helix-loop-helix ubiquitous kinase0.056
maxmyc-associated factor X0.055
glb1galactosidase, beta 10.055
slc16a3solute carrier family 16 (monocarboxylic acid transporters), member 30.053
gpt2glutamic pyruvate transaminase (alanine aminotransferase) 20.053
rrp9ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)0.053
tyw3tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)0.052
barx1BarH-like homeobox 10.052
rpl7l1ribosomal protein L7-like 10.051
ip6k2inositol hexaphosphate kinase 20.049
LOC555692G patch domain containing 4-like0.048
mtmr12myotubularin related protein 120.048
utp6UTP6, small subunit (SSU) processome component, homolog (yeast)0.047
mtm1myotubularin 10.046
wdr12WD repeat domain 120.046
tarsthreonyl-tRNA synthetase0.046
rpp38ribonuclease P/MRP 38 subunit0.045
mobkl1bMOB1, Mps One Binder kinase activator-like 1B (yeast)0.042
smyhc2slow myosin heavy chain 20.042
klf2bKruppel-like factor 2b0.042
mycl1bv-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) b0.041
alg3asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)0.041
wnt7aawingless-type MMTV integration site family, member 7Aa0.040
lhx6LIM homeobox 60.040
pdlim4PDZ and LIM domain 40.040
gtf2h2general transcription factor IIH, polypeptide 20.040
csnk1ecasein kinase 1, epsilon0.039
slc30a4solute carrier family 30 (zinc transporter), member 40.038
lrrc4.1leucine rich repeat containing 4.10.038
atp6v0cbATPase, H+ transporting, lysosomal, V0 subunit c, b0.037
srmspermidine synthase0.037
gtf3aageneral transcription factor IIIAa0.037
kopaskopos0.036
arih1lariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like0.036
ruvbl2RuvB-like 2 (E. coli)0.035
dpysl3dihydropyrimidinase-like 30.035
nup155nucleoporin 1550.035
nsun2NOL1/NOP2/Sun domain family, member 20.034
aatfapoptosis antagonizing transcription factor0.033
si:ch211-114c12.2si:ch211-114c12.20.033
usp7ubiquitin specific peptidase 7 (herpes virus-associated)0.033
rhovras homolog gene family, member V0.033
nolc1nucleolar and coiled-body phosphoprotein 10.032
smfnsmall fragment nuclease0.032
pdlim2PDZ and LIM domain 2 (mystique)0.032
mocs3molybdenum cofactor synthesis 30.032
ap2a1adaptor-related protein complex 2, alpha 1 subunit0.031
dkc1dyskeratosis congenita 1, dyskerin0.031
htra1aHtrA serine peptidase 1a0.031
LOC100334210growth/differentiation factor 5-like0.030
slc30a6solute carrier family 30 (zinc transporter), member 60.030
srrtserrate RNA effector molecule homolog (Arabidopsis)0.030
si:dkey-273o13.1si:dkey-273o13.10.030
mychmyelocytomatosis oncogene homolog0.030
rorabRAR-related orphan receptor A, paralog b0.029
krasv-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog0.029
wdr36WD repeat domain 360.029
sh3gl2SH3-domain GRB2-like 20.029
snupnsnurportin 10.029
foxp1bforkhead box P1b0.029
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Drosophila melanogaster
NameDescriptionProbabilityFunc Analog Organism
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Homo sapiens
NameDescriptionProbabilityFunc Analog Organism
IKBKAPinhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein0.977
ELP3elongation protein 3 homolog (S. cerevisiae)0.972
ELP4elongation protein 4 homolog (S. cerevisiae)0.766
METTL1methyltransferase like 10.674
ELP2elongation protein 2 homolog (S. cerevisiae)0.652
NOP56NOP56 ribonucleoprotein homolog (yeast)0.481
WDR4WD repeat domain 40.447
NOP58NOP58 ribonucleoprotein homolog (yeast)0.372
SMN1survival of motor neuron 1, telomeric0.113
TP53RKTP53 regulating kinase0.099
NAT10N-acetyltransferase 10 (GCN5-related)0.079
DDX24DEAD (Asp-Glu-Ala-Asp) box polypeptide 240.076
FBLfibrillarin0.070
EIF3Geukaryotic translation initiation factor 3, subunit G0.068
NAF1nuclear assembly factor 1 homolog (S. cerevisiae)0.062
MMS19MMS19 nucleotide excision repair homolog (S. cerevisiae)0.062
NOLC1nucleolar and coiled-body phosphoprotein 10.058
RUVBL1RuvB-like 1 (E. coli)0.055
SP110SP110 nuclear body protein0.052
MKI67IPMKI67 (FHA domain) interacting nucleolar phosphoprotein0.049
STUB1STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase0.047
NIP7nuclear import 7 homolog (S. cerevisiae)0.046
GAR1GAR1 ribonucleoprotein homolog (yeast)0.043
MYST2MYST histone acetyltransferase 20.041
MOBKL1AMOB1, Mps One Binder kinase activator-like 1A (yeast)0.040
RRS1RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)0.038
NVLnuclear VCP-like0.037
IMPDH2IMP (inosine 5'-monophosphate) dehydrogenase 20.035
COILcoilin0.034
CEBPECCAAT/enhancer binding protein (C/EBP), epsilon0.033
XRN25'-3' exoribonuclease 20.033
DDX56DEAD (Asp-Glu-Ala-Asp) box polypeptide 560.031
CIRH1Acirrhosis, autosomal recessive 1A (cirhin)0.030
MDM4Mdm4 p53 binding protein homolog (mouse)0.029
WWP2WW domain containing E3 ubiquitin protein ligase 20.029
GNL3guanine nucleotide binding protein-like 3 (nucleolar)0.027
FAM96Bfamily with sequence similarity 96, member B0.026
PRMT1protein arginine methyltransferase 10.025
LAGE3L antigen family, member 30.025
NOP14NOP14 nucleolar protein homolog (yeast)0.025
UTP14AUTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)0.025
EIF3Deukaryotic translation initiation factor 3, subunit D0.025
WDYHV1WDYHV motif containing 10.024
NUFIP1nuclear fragile X mental retardation protein interacting protein 10.024
PSME1proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)0.023
PUS1pseudouridylate synthase 10.023
SDAD1SDA1 domain containing 10.022
DDX47DEAD (Asp-Glu-Ala-Asp) box polypeptide 470.022
DNAJA3DnaJ (Hsp40) homolog, subfamily A, member 30.022
ANKRD28ankyrin repeat domain 280.022
PIN1peptidylprolyl cis/trans isomerase, NIMA-interacting 10.022
EIF2B1eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa0.021
POLR1Cpolymerase (RNA) I polypeptide C, 30kDa0.021
SLC25A38solute carrier family 25, member 380.020
RSL1D1ribosomal L1 domain containing 10.020
RCL1RNA terminal phosphate cyclase-like 10.020
C19orf60chromosome 19 open reading frame 600.020
LSM6LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)0.020
LTV1LTV1 homolog (S. cerevisiae)0.020
DPH2DPH2 homolog (S. cerevisiae)0.020
ASCC2activating signal cointegrator 1 complex subunit 20.020
GPN1GPN-loop GTPase 10.020
NCLnucleolin0.019
DVL1dishevelled, dsh homolog 1 (Drosophila)0.019
DVL3dishevelled, dsh homolog 3 (Drosophila)0.018
DIEXFdigestive organ expansion factor homolog (zebrafish)0.018
WDR74WD repeat domain 740.018
CARHSP1calcium regulated heat stable protein 1, 24kDa0.018
CCDC86coiled-coil domain containing 860.018
GTF3C2general transcription factor IIIC, polypeptide 2, beta 110kDa0.018
MTRR5-methyltetrahydrofolate-homocysteine methyltransferase reductase0.018
MRTO4mRNA turnover 4 homolog (S. cerevisiae)0.017
YDJCYdjC homolog (bacterial)0.017
CRELD2cysteine-rich with EGF-like domains 20.017
PWP1PWP1 homolog (S. cerevisiae)0.017
XPO5exportin 50.017
PRMT6protein arginine methyltransferase 60.017
LIASlipoic acid synthetase0.017
NUBP2nucleotide binding protein 2 (MinD homolog, E. coli)0.017
OSGEPL1O-sialoglycoprotein endopeptidase-like 10.016
C7orf64chromosome 7 open reading frame 640.016
CSNK1Ecasein kinase 1, epsilon0.016
WDR73WD repeat domain 730.016
FASTKD2FAST kinase domains 20.016
DCTPP1dCTP pyrophosphatase 10.016
PPP6R3protein phosphatase 6, regulatory subunit 30.016
AGAP1ArfGAP with GTPase domain, ankyrin repeat and PH domain 10.015
PNO1partner of NOB1 homolog (S. cerevisiae)0.015
ZNF775zinc finger protein 7750.015
RRP15ribosomal RNA processing 15 homolog (S. cerevisiae)0.015
LARSleucyl-tRNA synthetase0.015
METTL17methyltransferase like 170.015
NXT1NTF2-like export factor 10.014
MAK16MAK16 homolog (S. cerevisiae)0.014
EIF3CLeukaryotic translation initiation factor 3, subunit C-like0.014
NOP2NOP2 nucleolar protein homolog (yeast)0.014
OSTF1osteoclast stimulating factor 10.014
PPP1R14Aprotein phosphatase 1, regulatory (inhibitor) subunit 14A0.014
FTSJD2FtsJ methyltransferase domain containing 20.014
LENG1leukocyte receptor cluster (LRC) member 10.014
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Mus musculus
NameDescriptionProbabilityFunc Analog Organism
Hnrnpkheterogeneous nuclear ribonucleoprotein K0.041
Mrps18bmitochondrial ribosomal protein S18B0.039
Hdac2histone deacetylase 20.030
Smyd5SET and MYND domain containing 50.024
Per2period homolog 2 (Drosophila)0.021
Srmspermidine synthase0.019
Pdia6protein disulfide isomerase associated 60.019
Garsglycyl-tRNA synthetase0.017
Lrrc59leucine rich repeat containing 590.016
Ftsj3FtsJ homolog 3 (E. coli)0.015
Hnrnpdheterogeneous nuclear ribonucleoprotein D0.015
Varsvalyl-tRNA synthetase0.014
Hnrpdlheterogeneous nuclear ribonucleoprotein D-like0.013
GmppbGDP-mannose pyrophosphorylase B0.013
Hnrnpa2b1heterogeneous nuclear ribonucleoprotein A2/B10.013
Ddx41DEAD (Asp-Glu-Ala-Asp) box polypeptide 410.012
Yarstyrosyl-tRNA synthetase0.012
Ccdc86coiled-coil domain containing 860.012
Sox4SRY-box containing gene 40.011
Wdr46WD repeat domain 460.011
Ddx56DEAD (Asp-Glu-Ala-Asp) box polypeptide 560.011
Parnpoly(A)-specific ribonuclease (deadenylation nuclease)0.011
Psmd3proteasome (prosome, macropain) 26S subunit, non-ATPase, 30.011
Utp20UTP20, small subunit (SSU) processome component, homolog (yeast)0.010
Bop1block of proliferation 10.010
Alg3asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)0.010
Creld2cysteine-rich with EGF-like domains 20.010
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Rattus norvegicus
NameDescriptionProbabilityFunc Analog Organism