The network for 'positive regulation of mrna processing' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

positive regulation of mrna processing

Any process that activates or increases the frequency, rate or extent of mRNA processing.

Danio rerio
NameDescriptionProbabilityFunc Analog Organism
vasavasa homolog0.551
puf60bpoly-U binding splicing factor b0.155
snrpcsmall nuclear ribonucleoprotein polypeptide C0.068
brca2breast cancer 2, early onset0.067
fzd7bfrizzled homolog 7b0.055
nanos3nanos homolog 30.041
cpsf6cleavage and polyadenylation specific factor 60.039
slc25a3bsolute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b0.037
ilf2interleukin enhancer binding factor 20.036
snrnp40small nuclear ribonucleoprotein 40 (U5)0.033
bucbucky ball0.032
eef2beukaryotic translation elongation factor 2b0.028
rnps1RNA binding protein S1, serine-rich domain0.027
ccnkcyclin K0.026
znf207azinc finger protein 207, a0.025
ilf3ainterleukin enhancer binding factor 3a0.023
ddx39bDEAD (Asp-Glu-Ala-Asp) box polypeptide 39b0.023
srsf6aserine/arginine-rich splicing factor 6a0.023
glud1bglutamate dehydrogenase 1b0.021
sephs1selenophosphate synthetase 10.021
ash2lash2 (absent, small, or homeotic)-like (Drosophila)0.020
rbb4lretinoblastoma binding protein 4, like0.019
robo3roundabout homolog 30.019
smarce1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 10.018
ilf3binterleukin enhancer binding factor 3b0.018
nusap1nucleolar and spindle associated protein 10.018
zgc:77407zgc:774070.018
sae1SUMO1 activating enzyme subunit 10.017
thoc4THO complex 40.017
ccna2cyclin A20.017
sf1splicing factor 10.017
zgc:56304zgc:563040.016
gins3GINS complex subunit 30.016
zgc:77052zgc:770520.016
nup50nucleoporin 500.016
nup93nucleoporin 930.016
zgc:136773zgc:1367730.015
ephb4beph receptor B4b0.015
fanclFanconi anemia, complementation group L0.015
macf1microtubule-actin crosslinking factor 10.015
hnrnpmheterogeneous nuclear ribonucleoprotein M0.015
eif4heukaryotic translation initiation factor 4h0.015
hnrnpabheterogeneous nuclear ribonucleoprotein A/B0.014
cdca8cell division cycle associated 80.014
stox2storkhead box 20.014
paf1paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)0.014
cherpcalcium homeostasis endoplasmic reticulum protein0.014
stau2staufen, RNA binding protein, homolog 2 (Drosophila)0.013
wu:fb58e05wu:fb58e050.013
sumo3aSMT3 suppressor of mif two 3 homolog 3a0.013
ef1aelongation factor 1-alpha0.013
polr2bpolymerase (RNA) II (DNA directed) polypeptide B0.013
sap30bpSAP30 binding protein and SAP30 binding protein0.013
srsf11serine/arginine-rich splicing factor 110.013
sf3a2splicing factor 3a, subunit 20.013
eif4a1aeukaryotic translation initiation factor 4A, isoform 1A0.012
cbx1achromobox homolog 1a (HP1 beta homolog Drosophila)0.012
rplp0ribosomal protein, large, P00.012
zgc:66382zgc:663820.012
ubinataxin-1 ubiquitin-like interacting protein0.012
nolc1nucleolar and coiled-body phosphoprotein 10.012
tubg1tubulin, gamma 10.012
huwe1HECT, UBA and WWE domain containing 10.012
prpf40aPRP40 pre-mRNA processing factor 40 homolog A (yeast)0.011
cstf1cleavage stimulation factor, 3' pre-RNA, subunit 10.011
mad2l1MAD2 mitotic arrest deficient-like 1 (yeast)0.011
ccnb1cyclin B10.011
hspa5heat shock protein 50.011
srrtserrate RNA effector molecule homolog (Arabidopsis)0.011
zgc:112350zgc:1123500.010
bag6BCL2-associated athanogene 60.010
hspd1heat shock 60kD protein 1 (chaperonin)0.010
lama5laminin, alpha 50.010
depdc1aDEP domain containing 1a0.010
ctnnb1catenin (cadherin-associated protein), beta 10.010
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Caenorhabditis elegans
NameDescriptionProbabilityFunc Analog Organism
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Drosophila melanogaster
NameDescriptionProbabilityFunc Analog Organism
Ge-1CG6181 gene product from transcript CG6181-RA0.619
traltrailer hitch0.313
spn-Espindle E0.287
SF2CG6987 gene product from transcript CG6987-RA0.140
feofascetto0.105
belbelle0.078
piwiCG6122 gene product from transcript CG6122-RA0.066
DlicDynein light intermediate chain0.056
CG17528CG17528 gene product from transcript CG17528-RC0.054
TER94CG2331 gene product from transcript CG2331-RA0.049
Nipped-BCG17704 gene product from transcript CG17704-RI0.047
CTCFCG8591 gene product from transcript CG8591-RA0.047
orboo18 RNA-binding protein0.045
CycB3Cyclin B30.041
atmsantimeros0.041
armiarmitage0.037
Srp54CG4602 gene product from transcript CG4602-RA0.035
zpgzero population growth0.032
stwlstonewall0.031
aubaubergine0.030
defldeflated0.027
scnyscrawny0.026
koiklaroid0.024
swshort wing0.022
swmsecond mitotic wave missing0.021
PsaPuromycin sensitive aminopeptidase0.020
Mys45AMystery 45A0.020
UnrUpstream of N-ras0.019
D1D1 chromosomal protein0.019
RanGapRan GTPase activating protein0.019
CG12325CG12325 gene product from transcript CG12325-RA0.018
CG6015CG6015 gene product from transcript CG6015-RA0.017
mtrmmatrimony0.017
Top2Topoisomerase 20.017
CG4699CG4699 gene product from transcript CG4699-RJ0.016
UbcD2Ubiquitin conjugating enzyme 20.016
MED15Mediator complex subunit 150.015
NmtN-myristoyl transferase0.015
ash1absent, small, or homeotic discs 10.013
Pabp2CG2163 gene product from transcript CG2163-RA0.013
Atx2Ataxin-20.013
larkCG8597 gene product from transcript CG8597-RD0.012
l(1)10Bblethal (1) 10Bb0.012
mbomembers only0.012
CG6905CG6905 gene product from transcript CG6905-RA0.012
CG7757CG7757 gene product from transcript CG7757-RA0.011
hephhephaestus0.011
Loading network...
Homo sapiens
NameDescriptionProbabilityFunc Analog Organism
TOB1transducer of ERBB2, 10.997
BTG1B-cell translocation gene 1, anti-proliferative0.976
TNRC6Atrinucleotide repeat containing 6A0.966
MAGOHmago-nashi homolog, proliferation-associated (Drosophila)0.954
DICER1dicer 1, ribonuclease type III0.913
RTF1Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)0.908
EIF2C1eukaryotic translation initiation factor 2C, 10.827
CNOT8CCR4-NOT transcription complex, subunit 80.750
CNOT7CCR4-NOT transcription complex, subunit 70.703
EIF4A3eukaryotic translation initiation factor 4A30.663
PABPC1poly(A) binding protein, cytoplasmic 10.608
RBM10RNA binding motif protein 100.482
TCEA1transcription elongation factor A (SII), 10.432
CNOT6LCCR4-NOT transcription complex, subunit 6-like0.377
CNOT1CCR4-NOT transcription complex, subunit 10.371
CDC5LCDC5 cell division cycle 5-like (S. pombe)0.328
CPEB4cytoplasmic polyadenylation element binding protein 40.322
TNRC6Ctrinucleotide repeat containing 6C0.305
EIF2C3eukaryotic translation initiation factor 2C, 30.281
MBNL1muscleblind-like (Drosophila)0.276
HNRNPCheterogeneous nuclear ribonucleoprotein C (C1/C2)0.207
PAN3PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)0.143
SRRM1serine/arginine repetitive matrix 10.143
TNRC6Btrinucleotide repeat containing 6B0.132
BTG2BTG family, member 20.100
SF1splicing factor 10.098
CTR9Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)0.095
HNRNPMheterogeneous nuclear ribonucleoprotein M0.087
SF3A1splicing factor 3a, subunit 1, 120kDa0.087
CPEB3cytoplasmic polyadenylation element binding protein 30.082
CNOT6CCR4-NOT transcription complex, subunit 60.075
WDR61WD repeat domain 610.069
CEBPDCCAAT/enhancer binding protein (C/EBP), delta0.060
BCAS2breast carcinoma amplified sequence 20.055
FUSfused in sarcoma0.053
USP10ubiquitin specific peptidase 100.053
ILF3interleukin enhancer binding factor 3, 90kDa0.052
HNRNPH1heterogeneous nuclear ribonucleoprotein H1 (H)0.052
FOSFBJ murine osteosarcoma viral oncogene homolog0.050
U2AF1U2 small nuclear RNA auxiliary factor 10.049
NR4A2nuclear receptor subfamily 4, group A, member 20.048
EIF2C4eukaryotic translation initiation factor 2C, 40.046
SRPK1SRSF protein kinase 10.044
CKS1BCDC28 protein kinase regulatory subunit 1B0.037
CSTF2cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa0.034
PNRC1proline-rich nuclear receptor coactivator 10.034
SF3B3splicing factor 3b, subunit 3, 130kDa0.033
JUNBjun B proto-oncogene0.031
PAF1Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)0.030
CDK2cyclin-dependent kinase 20.029
SF3A2splicing factor 3a, subunit 2, 66kDa0.028
AFF4AF4/FMR2 family, member 40.028
CLK2CDC-like kinase 20.028
CHTOPchromatin target of PRMT10.027
EIF2C2eukaryotic translation initiation factor 2C, 20.026
PLRG1pleiotropic regulator 1 (PRL1 homolog, Arabidopsis)0.026
ZFP36zinc finger protein 36, C3H type, homolog (mouse)0.025
H2AFZH2A histone family, member Z0.024
CCNE1cyclin E10.023
CWC15CWC15 spliceosome-associated protein homolog (S. cerevisiae)0.021
POP5processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)0.021
PAFAH1B2platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)0.020
RNPS1RNA binding protein S1, serine-rich domain0.020
TCOF1Treacher Collins-Franceschetti syndrome 10.020
TLE1transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)0.020
PPP1R8protein phosphatase 1, regulatory (inhibitor) subunit 80.019
PRKD2protein kinase D20.019
YTHDC1YTH domain containing 10.019
HNRNPFheterogeneous nuclear ribonucleoprotein F0.018
GSPT1G1 to S phase transition 10.018
SOBPsine oculis binding protein homolog (Drosophila)0.018
RNF20ring finger protein 200.018
TARDBPTAR DNA binding protein0.017
IER2immediate early response 20.017
CDK1cyclin-dependent kinase 10.016
DHX9DEAH (Asp-Glu-Ala-His) box polypeptide 90.016
CSRNP1cysteine-serine-rich nuclear protein 10.016
RBM8ARNA binding motif protein 8A0.015
CNOT3CCR4-NOT transcription complex, subunit 30.015
EIF4G1eukaryotic translation initiation factor 4 gamma, 10.015
KLF6Kruppel-like factor 60.014
E2F1E2F transcription factor 10.013
USP22ubiquitin specific peptidase 220.013
PABPN1poly(A) binding protein, nuclear 10.013
BAG2BCL2-associated athanogene 20.013
CCND1cyclin D10.013
LEO1Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)0.013
SKILSKI-like oncogene0.013
TOB2transducer of ERBB2, 20.013
SRSF6serine/arginine-rich splicing factor 60.013
FAF1Fas (TNFRSF6) associated factor 10.012
DDX56DEAD (Asp-Glu-Ala-Asp) box polypeptide 560.011
YWHAGtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide0.011
HDAC7histone deacetylase 70.011
SNRNP200small nuclear ribonucleoprotein 200kDa (U5)0.011
PRKRAprotein kinase, interferon-inducible double stranded RNA dependent activator0.011
SFPQsplicing factor proline/glutamine-rich0.010
PCBP2poly(rC) binding protein 20.010
CKS2CDC28 protein kinase regulatory subunit 20.010
Loading network...
Mus musculus
NameDescriptionProbabilityFunc Analog Organism
SetSET nuclear oncogene0.441
FosFBJ osteosarcoma oncogene0.409
Ptmaprothymosin alpha0.233
Srsf3serine/arginine-rich splicing factor 30.167
Neurl1aneuralized homolog 1A (Drosophila)0.162
Hsp90aa1heat shock protein 90, alpha (cytosolic), class A member 10.136
Sfpqsplicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)0.117
Srsf2serine/arginine-rich splicing factor 20.097
Ywhaetyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide0.090
Usp9xubiquitin specific peptidase 9, X chromosome0.089
Fusfusion, derived from t(12;16) malignant liposarcoma (human)0.081
Nclnucleolin0.075
Hsp90ab1heat shock protein 90 alpha (cytosolic), class B member 10.072
Zfp830zinc finger protein 8300.070
Ier2immediate early response 20.065
Dusp1dual specificity phosphatase 10.064
JunbJun-B oncogene0.061
Ddx6DEAD (Asp-Glu-Ala-Asp) box polypeptide 60.059
Hmx3H6 homeobox 30.057
Hnrnpa3heterogeneous nuclear ribonucleoprotein A30.051
Cnot6CCR4-NOT transcription complex, subunit 60.049
Chd7chromodomain helicase DNA binding protein 70.047
Jag1jagged 10.047
Anp32bacidic (leucine-rich) nuclear phosphoprotein 32 family, member B0.047
2500003M10RikRIKEN cDNA 2500003M10 gene0.037
Syncripsynaptotagmin binding, cytoplasmic RNA interacting protein0.036
Ewsr1Ewing sarcoma breakpoint region 10.035
Safbscaffold attachment factor B0.035
Brd4bromodomain containing 40.033
Prmt1protein arginine N-methyltransferase 10.033
Eif4a1eukaryotic translation initiation factor 4A10.031
Tnrc6btrinucleotide repeat containing 6b0.031
Trim32tripartite motif-containing 320.030
Klf6Kruppel-like factor 60.030
Srsf7serine/arginine-rich splicing factor 70.029
Pax2paired box gene 20.028
Rbbp7retinoblastoma binding protein 70.028
Btg2B-cell translocation gene 2, anti-proliferative0.027
Pcbp1poly(rC) binding protein 10.025
Hnrnpa1heterogeneous nuclear ribonucleoprotein A10.025
Rnps1ribonucleic acid binding protein S10.024
Srsf9serine/arginine-rich splicing factor 90.024
Rbm8aRNA binding motif protein 8a0.024
Tbx10T-box 100.024
Cdk9cyclin-dependent kinase 9 (CDC2-related kinase)0.024
Btg1B-cell translocation gene 1, anti-proliferative0.024
Srsf6serine/arginine-rich splicing factor 60.024
Rbbp6retinoblastoma binding protein 60.023
Hnrnpa0heterogeneous nuclear ribonucleoprotein A00.022
U2af2U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 20.022
Khdrbs1KH domain containing, RNA binding, signal transduction associated 10.022
Ddx39bDEAD (Asp-Glu-Ala-Asp) box polypeptide 39B0.021
Hmgb2high mobility group box 20.021
Eif2c2eukaryotic translation initiation factor 2C, 20.021
Egr1early growth response 10.021
Pcnaproliferating cell nuclear antigen0.021
Hoxa1homeobox A10.020
Taf1dTATA box binding protein (Tbp)-associated factor, RNA polymerase I, D0.020
Nr4a1nuclear receptor subfamily 4, group A, member 10.018
Ppp1ccprotein phosphatase 1, catalytic subunit, gamma isoform0.018
Tbx1T-box 10.018
Pabpn1poly(A) binding protein, nuclear 10.018
Midnmidnolin0.018
Efnb2ephrin B20.018
Ctbp1C-terminal binding protein 10.018
2410002F23RikRIKEN cDNA 2410002F23 gene0.018
Nfkbiznuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta0.018
Hnrnpkheterogeneous nuclear ribonucleoprotein K0.017
Ptbp2polypyrimidine tract binding protein 20.017
Foxg1forkhead box G10.017
Egr2early growth response 20.016
Tcerg1transcription elongation regulator 1 (CA150)0.016
Cct2chaperonin containing Tcp1, subunit 2 (beta)0.016
Mafkv-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)0.016
Ptges3prostaglandin E synthase 3 (cytosolic)0.016
Sox2SRY-box containing gene 20.016
Nap1l1nucleosome assembly protein 1-like 10.016
JunJun oncogene0.015
Tnrc6ctrinucleotide repeat containing 6C0.015
Bptfbromodomain PHD finger transcription factor0.015
Kif1bkinesin family member 1B0.015
Npm1nucleophosmin 10.015
Txndc5thioredoxin domain containing 50.015
Tdgthymine DNA glycosylase0.015
Dhx15DEAH (Asp-Glu-Ala-His) box polypeptide 150.014
Zfp36zinc finger protein 360.014
Nfkbianuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha0.014
Bach1BTB and CNC homology 10.014
Mll3myeloid/lymphoid or mixed-lineage leukemia 30.014
Eif4heukaryotic translation initiation factor 4H0.014
TardbpTAR DNA binding protein0.014
Six1sine oculis-related homeobox 1 homolog (Drosophila)0.013
Snrpbsmall nuclear ribonucleoprotein B0.013
Ranbp1RAN binding protein 10.013
Dnaja1DnaJ (Hsp40) homolog, subfamily A, member 10.013
Pum1pumilio 1 (Drosophila)0.013
Csrnp1cysteine-serine-rich nuclear protein 10.013
Pim1proviral integration site 10.013
Piwil2piwi-like homolog 2 (Drosophila)0.012
Sf1splicing factor 10.012
Loading network...
Rattus norvegicus
NameDescriptionProbabilityFunc Analog Organism
Junbjun B proto-oncogene0.040
Hsp90ab1heat shock protein 90 alpha (cytosolic), class B member 10.030
FosFBJ osteosarcoma oncogene0.028
Btg2BTG family, member 20.023
Nr4a1nuclear receptor subfamily 4, group A, member 10.020
Ppp1r15aprotein phosphatase 1, regulatory (inhibitor) subunit 15A0.018
Zfp36zinc finger protein 360.018
Hsp90aa1heat shock protein 90, alpha (cytosolic), class A member 10.017
Egr1early growth response 10.016
Dusp1dual specificity phosphatase 10.016
JunJun oncogene0.010
Loading network...
Saccharomyces cerevisiae
NameDescriptionProbabilityFunc Analog Organism
CLB1Clb1p0.132
SSA4Ssa4p0.095
CLB3Clb3p0.090
CKS1Cks1p0.072
MPT5Mpt5p0.068
CLB4Clb4p0.064
CLB6Clb6p0.054
DED1Ded1p0.054
CDC6Cdc6p0.046
SSA3Ssa3p0.039
STI1Sti1p0.038
RPB11Rpb11p0.038
TIF4632Tif4632p0.035
CLN2Cln2p0.030
CLB5Clb5p0.029
SIS1Sis1p0.029
PRP28Prp28p0.027
BTN2Btn2p0.025
DHH1Dhh1p0.024
PSF1Psf1p0.024
CDC60Cdc60p0.023
LUC7Luc7p0.022
KIN3Kin3p0.022
SRD1Srd1p0.022
YLR264C-Ahypothetical protein0.022
YLR162Whypothetical protein0.021
NAB3Nab3p0.021
HOHop0.020
CUP1-1Cup1-1p0.020
KTI11Kti11p0.020
UTP20Utp20p0.020
RPO21Rpo21p0.020
LEU2Leu2p0.019
YOL038C-Ahypothetical protein0.019
PBP1Pbp1p0.019
ARP10Arp10p0.019
SNU56Snu56p0.019
YDR179W-Ahypothetical protein0.019
REB1Reb1p0.018
URA3Ura3p0.018
ICS2Ics2p0.018
MER1Mer1p0.018
PRP24Prp24p0.018
CDC20Cdc20p0.018
MSA2Msa2p0.017
HXT3Hxt3p0.017
GLN1Gln1p0.017
YOR390Whypothetical protein0.017
RRN11Rrn11p0.017
ARG8Arg8p0.017
SPS4Sps4p0.017
YAR068Whypothetical protein0.016
FAS2Fas2p0.016
ATP6Atp6p0.016
ZPS1Zps1p0.016
YHL008Chypothetical protein0.016
CRP1Crp1p0.016
ZPR1Zpr1p0.016
YIR035Chypothetical protein0.016
CPD1Cpd1p0.016
VIK1Vik1p0.016
HPF1Hpf1p0.016
YPL014Whypothetical protein0.016
ORC6Orc6p0.016
ADH2Adh2p0.016
TIP1Tip1p0.015
YBR013Chypothetical protein0.015
CAM1Cam1p0.015
URA2Ura2p0.015
FMT1Fmt1p0.015
RPB10Rpb10p0.015
YOL013W-Ahypothetical protein0.015
HBT1Hbt1p0.015
SCM4Scm4p0.015
SUP35Sup35p0.015
NDD1Ndd1p0.015
VAC17Vac17p0.015
YIL151Chypothetical protein0.015
DPB2Dpb2p0.015
YBR016Whypothetical protein0.015
RRT5Rrt5p0.015
CHA1Cha1p0.015
SPL2Spl2p0.014
AUA1Aua1p0.014
OPT2Opt2p0.014
MF(ALPHA)2Mf(alpha)2p0.014
BSC1Bsc1p0.014
YNL058Chypothetical protein0.014
RPB3Rpb3p0.014
YGR035Chypothetical protein0.014
ADY2Ady2p0.014
RRN7Rrn7p0.014
ALT2Alt2p0.014
YPR096Chypothetical protein0.014
YPR157Whypothetical protein0.014
WSC4Wsc4p0.014
BBP1Bbp1p0.014
NCE102Nce102p0.014
DIF1Dif1p0.014
TIF1Tif1p0.014