Saccharomyces cerevisiae

145 known processes

RPN4 (YDL020C)

Rpn4p

(Aliases: SON1,UFD5)

RPN4 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.981
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.972
positive regulation of nucleic acid templated transcription GO:1903508 286 0.947
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.946
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.877
positive regulation of transcription from rna polymerase ii promoter GO:0045944 252 0.874
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.867
negative regulation of rna metabolic process GO:0051253 262 0.866
negative regulation of rna biosynthetic process GO:1902679 260 0.863
negative regulation of nucleic acid templated transcription GO:1903507 260 0.848
cell communication GO:0007154 345 0.843
Yeast
negative regulation of transcription dna templated GO:0045892 258 0.836
negative regulation of macromolecule metabolic process GO:0010605 375 0.819
negative regulation of cellular biosynthetic process GO:0031327 312 0.812
negative regulation of biosynthetic process GO:0009890 312 0.809
protein modification by small protein conjugation or removal GO:0070647 172 0.793
positive regulation of macromolecule metabolic process GO:0010604 394 0.769
response to chemical GO:0042221 390 0.742
chromatin organization GO:0006325 242 0.738
Yeast
positive regulation of rna biosynthetic process GO:1902680 286 0.728
protein catabolic process GO:0030163 221 0.712
positive regulation of transcription dna templated GO:0045893 286 0.701
modification dependent protein catabolic process GO:0019941 181 0.694
response to organic substance GO:0010033 182 0.681
Yeast
cellular response to chemical stimulus GO:0070887 315 0.655
protein modification by small protein conjugation GO:0032446 144 0.634
negative regulation of gene expression GO:0010629 312 0.625
positive regulation of rna metabolic process GO:0051254 294 0.610
response to external stimulus GO:0009605 158 0.604
Yeast
negative regulation of gene expression epigenetic GO:0045814 147 0.600
Yeast
chromatin modification GO:0016568 200 0.587
ubiquitin dependent protein catabolic process GO:0006511 181 0.524
cellular protein catabolic process GO:0044257 213 0.523
proteasomal protein catabolic process GO:0010498 141 0.512
positive regulation of gene expression GO:0010628 321 0.472
regulation of localization GO:0032879 127 0.453
Yeast
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.450
small molecule biosynthetic process GO:0044283 258 0.448
Yeast
positive regulation of cellular biosynthetic process GO:0031328 336 0.439
modification dependent macromolecule catabolic process GO:0043632 203 0.439
macromolecule catabolic process GO:0009057 383 0.439
nuclear division GO:0000280 263 0.433
Yeast
gene silencing GO:0016458 151 0.423
Yeast
cellular macromolecule catabolic process GO:0044265 363 0.413
proteolysis GO:0006508 268 0.404
cellular response to extracellular stimulus GO:0031668 150 0.396
Yeast
organonitrogen compound biosynthetic process GO:1901566 314 0.392
Yeast
positive regulation of biosynthetic process GO:0009891 336 0.372
single organism signaling GO:0044700 208 0.369
Yeast
signal transduction GO:0007165 208 0.358
Yeast
regulation of biological quality GO:0065008 391 0.353
Yeast
positive regulation of transcription from rna polymerase ii promoter in response to stress GO:0036003 33 0.349
organic acid metabolic process GO:0006082 352 0.345
Yeast
nitrogen compound transport GO:0071705 212 0.334
regulation of cellular component organization GO:0051128 334 0.326
Yeast
proteolysis involved in cellular protein catabolic process GO:0051603 198 0.321
single organism carbohydrate metabolic process GO:0044723 237 0.319
Yeast
growth GO:0040007 157 0.316
Yeast
cellular response to dna damage stimulus GO:0006974 287 0.308
signaling GO:0023052 208 0.304
Yeast
regulation of response to stimulus GO:0048583 157 0.302
carboxylic acid biosynthetic process GO:0046394 152 0.301
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.278
cellular response to organic substance GO:0071310 159 0.270
Yeast
protein ubiquitination GO:0016567 118 0.260
chromatin remodeling GO:0006338 80 0.256
cellular chemical homeostasis GO:0055082 123 0.256
Yeast
response to reactive oxygen species GO:0000302 22 0.255
response to extracellular stimulus GO:0009991 156 0.242
Yeast
regulation of transport GO:0051049 85 0.230
Yeast
filamentous growth GO:0030447 124 0.227
Yeast
homeostatic process GO:0042592 227 0.222
Yeast
developmental process GO:0032502 261 0.218
Yeast
regulation of cell cycle process GO:0010564 150 0.207
response to temperature stimulus GO:0009266 74 0.206
establishment of protein localization GO:0045184 367 0.186
meiotic nuclear division GO:0007126 163 0.175
Yeast
oxoacid metabolic process GO:0043436 351 0.173
Yeast
regulation of cell cycle GO:0051726 195 0.171
negative regulation of transcription from rna polymerase ii promoter GO:0000122 137 0.170
regulation of chromatin silencing GO:0031935 39 0.155
Yeast
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.148
response to nutrient levels GO:0031667 150 0.144
Yeast
cellular response to nutrient levels GO:0031669 144 0.140
Yeast
response to heat GO:0009408 69 0.134
negative regulation of response to stimulus GO:0048585 40 0.133
Yeast
chromatin silencing GO:0006342 147 0.131
Yeast
aging GO:0007568 71 0.128
regulation of gene expression epigenetic GO:0040029 147 0.127
Yeast
heterocycle catabolic process GO:0046700 494 0.122
protein localization to organelle GO:0033365 337 0.121
cellular ketone metabolic process GO:0042180 63 0.119
Yeast
cellular response to external stimulus GO:0071496 150 0.119
Yeast
carbon catabolite regulation of transcription from rna polymerase ii promoter GO:0000429 34 0.117
Yeast
regulation of lipid metabolic process GO:0019216 45 0.116
Yeast
cellular response to starvation GO:0009267 90 0.115
regulation of cell division GO:0051302 113 0.113
protein dna complex subunit organization GO:0071824 153 0.113
protein phosphorylation GO:0006468 197 0.109
dna repair GO:0006281 236 0.107
regulation of proteasomal protein catabolic process GO:0061136 34 0.106
positive regulation of cellular component organization GO:0051130 116 0.103
Yeast
regulation of response to stress GO:0080134 57 0.103
response to oxidative stress GO:0006979 99 0.102
fungal type cell wall organization or biogenesis GO:0071852 169 0.100
Yeast
regulation of cellular catabolic process GO:0031329 195 0.099
positive regulation of gene expression epigenetic GO:0045815 25 0.098
Yeast
single organism cellular localization GO:1902580 375 0.097
establishment of protein localization to organelle GO:0072594 278 0.092
reproductive process GO:0022414 248 0.089
Yeast
multi organism process GO:0051704 233 0.088
Yeast
external encapsulating structure organization GO:0045229 146 0.083
cell aging GO:0007569 70 0.080
response to nutrient GO:0007584 52 0.079
Yeast
cellular homeostasis GO:0019725 138 0.078
Yeast
carboxylic acid metabolic process GO:0019752 338 0.078
Yeast
mitotic cell cycle phase transition GO:0044772 141 0.077
response to starvation GO:0042594 96 0.076
regulation of organelle organization GO:0033043 243 0.076
Yeast
regulation of cell communication GO:0010646 124 0.076
lipid biosynthetic process GO:0008610 170 0.075
Yeast
carbon catabolite regulation of transcription GO:0045990 39 0.074
Yeast
cell wall organization or biogenesis GO:0071554 190 0.073
Yeast
organelle fission GO:0048285 272 0.073
Yeast
lipid metabolic process GO:0006629 269 0.070
Yeast
response to inorganic substance GO:0010035 47 0.070
Yeast
g1 s transition of mitotic cell cycle GO:0000082 64 0.067
regulation of proteasomal ubiquitin dependent protein catabolic process GO:0032434 30 0.067
positive regulation of lipid catabolic process GO:0050996 4 0.065
Yeast
intracellular signal transduction GO:0035556 112 0.063
Yeast
negative regulation of signal transduction GO:0009968 30 0.062
regulation of intracellular signal transduction GO:1902531 78 0.062
regulation of cellular component biogenesis GO:0044087 112 0.061
regulation of catabolic process GO:0009894 199 0.061
reproductive process in single celled organism GO:0022413 145 0.061
Yeast
regulation of fatty acid oxidation GO:0046320 3 0.060
Yeast
response to abiotic stimulus GO:0009628 159 0.060
Yeast
negative regulation of cellular metabolic process GO:0031324 407 0.060
cellular response to arsenic containing substance GO:0071243 7 0.060
cellular response to oxidative stress GO:0034599 94 0.058
amide transport GO:0042886 22 0.058
response to oxygen containing compound GO:1901700 61 0.057
Yeast
response to metal ion GO:0010038 24 0.056
Yeast
cellular nitrogen compound catabolic process GO:0044270 494 0.056
positive regulation of peroxisome organization by positive regulation of transcription from rna polymerase ii promoter GO:0061424 1 0.055
Yeast
pseudohyphal growth GO:0007124 75 0.055
Yeast
regulation of gene silencing GO:0060968 41 0.055
Yeast
single organism developmental process GO:0044767 258 0.055
Yeast
regulation of cellular response to stress GO:0080135 50 0.053
positive regulation of protein catabolic process GO:0045732 9 0.053
regulation of cellular protein metabolic process GO:0032268 232 0.052
regulation of transcription from rna polymerase ii promoter in response to stress GO:0043618 51 0.052
regulation of signal transduction GO:0009966 114 0.050
regulation of growth GO:0040008 50 0.048
Yeast
cell wall biogenesis GO:0042546 93 0.047
Yeast
organic acid biosynthetic process GO:0016053 152 0.047
regulation of dna templated transcription in response to stress GO:0043620 51 0.047
positive regulation of transcription from rna polymerase ii promoter by oleic acid GO:0061429 4 0.045
Yeast
cell growth GO:0016049 89 0.044
Yeast
reproduction of a single celled organism GO:0032505 191 0.044
Yeast
positive regulation of cellular response to drug GO:2001040 3 0.043
Yeast
cellular cation homeostasis GO:0030003 100 0.042
Yeast
covalent chromatin modification GO:0016569 119 0.041
regulation of dna metabolic process GO:0051052 100 0.041
mitotic nuclear division GO:0007067 131 0.041
cellular developmental process GO:0048869 191 0.040
Yeast
multi organism cellular process GO:0044764 120 0.039
Yeast
regulation of protein modification process GO:0031399 110 0.038
phosphorylation GO:0016310 291 0.037
alcohol metabolic process GO:0006066 112 0.037
Yeast
lipid modification GO:0030258 37 0.037
Yeast
protein transport GO:0015031 345 0.037
organic hydroxy compound metabolic process GO:1901615 125 0.036
Yeast
regulation of phosphorylation GO:0042325 86 0.036
monocarboxylic acid metabolic process GO:0032787 122 0.035
Yeast
surface biofilm formation GO:0090604 3 0.035
Yeast
histone modification GO:0016570 119 0.034
cell cycle g1 s phase transition GO:0044843 64 0.034
positive regulation of organelle organization GO:0010638 85 0.034
Yeast
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 137 0.034
positive regulation of cellular catabolic process GO:0031331 128 0.033
anatomical structure development GO:0048856 160 0.033
Yeast
carbon catabolite repression of transcription from rna polymerase ii promoter GO:0000437 12 0.033
Yeast
response to nitrosative stress GO:0051409 3 0.033
cellular response to heat GO:0034605 53 0.032
meiotic cell cycle GO:0051321 272 0.031
Yeast
response to hydrogen peroxide GO:0042542 12 0.030
positive regulation of transcription by oleic acid GO:0061421 4 0.030
Yeast
cellular response to nutrient GO:0031670 50 0.029
Yeast
aromatic compound catabolic process GO:0019439 491 0.028
regulation of cellular protein catabolic process GO:1903362 36 0.028
positive regulation of sodium ion transport by positive regulation of transcription from rna polymerase ii promoter GO:0061423 1 0.027
Yeast
cellular lipid metabolic process GO:0044255 229 0.027
Yeast
regulation of cellular hyperosmotic salinity response GO:1900069 2 0.027
Yeast
monocarboxylic acid biosynthetic process GO:0072330 35 0.027
cellular response to caloric restriction GO:0061433 2 0.027
single organism catabolic process GO:0044712 619 0.027
Yeast
nucleocytoplasmic transport GO:0006913 163 0.026
cellular response to oxygen containing compound GO:1901701 43 0.026
Yeast
cellular metal ion homeostasis GO:0006875 78 0.026
Yeast
vesicle mediated transport GO:0016192 335 0.026
positive regulation of response to drug GO:2001025 3 0.026
Yeast
regulation of transcription by pheromones GO:0009373 14 0.025
Yeast
nucleobase containing compound catabolic process GO:0034655 479 0.024
response to blue light GO:0009637 2 0.024
Yeast
positive regulation of transport GO:0051050 32 0.024
Yeast
regulation of lipid biosynthetic process GO:0046890 32 0.024
Yeast
er associated ubiquitin dependent protein catabolic process GO:0030433 46 0.023
carbon catabolite activation of transcription from rna polymerase ii promoter GO:0000436 22 0.023
Yeast
negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from rna polymerase ii promoter GO:1900464 2 0.023
Yeast
regulation of phosphate metabolic process GO:0019220 230 0.022
cell cycle phase transition GO:0044770 144 0.022
regulation of filamentous growth GO:0010570 38 0.022
Yeast
regulation of molecular function GO:0065009 320 0.021
carbohydrate derivative metabolic process GO:1901135 549 0.021
Yeast
chemical homeostasis GO:0048878 137 0.021
Yeast
filamentous growth of a population of unicellular organisms GO:0044182 109 0.021
Yeast
multi organism reproductive process GO:0044703 216 0.021
Yeast
positive regulation of cellular protein metabolic process GO:0032270 89 0.021
posttranscriptional regulation of gene expression GO:0010608 115 0.020
positive regulation of phosphorus metabolic process GO:0010562 147 0.020
carbohydrate metabolic process GO:0005975 252 0.020
Yeast
carbohydrate biosynthetic process GO:0016051 82 0.020
Yeast
single organism reproductive process GO:0044702 159 0.020
Yeast
cellular response to anoxia GO:0071454 3 0.020
Yeast
sulfite transport GO:0000316 2 0.020
mitotic cell cycle process GO:1903047 294 0.019
Yeast
cation homeostasis GO:0055080 105 0.019
Yeast
anatomical structure morphogenesis GO:0009653 160 0.019
Yeast
cellular amino acid metabolic process GO:0006520 225 0.019
negative regulation of phosphorus metabolic process GO:0010563 49 0.019
carbon catabolite activation of transcription GO:0045991 26 0.019
Yeast
regulation of transcription from rna polymerase ii promoter by calcium mediated signaling GO:1900621 1 0.019
Yeast
regulation of lipid catabolic process GO:0050994 4 0.019
Yeast
organic cyclic compound catabolic process GO:1901361 499 0.018
positive regulation of transcription during mitosis GO:0045897 1 0.018
regulation of transcription from rna polymerase ii promoter in response to oxidative stress GO:0043619 9 0.018
regulation of ethanol catabolic process GO:1900065 1 0.018
Yeast
positive regulation of ethanol catabolic process GO:1900066 1 0.018
Yeast
mitochondrion organization GO:0007005 261 0.018
ion homeostasis GO:0050801 118 0.017
Yeast
regulation of cellular ketone metabolic process GO:0010565 42 0.017
Yeast
response to freezing GO:0050826 4 0.016
steroid metabolic process GO:0008202 47 0.016
Yeast
positive regulation of cell cycle GO:0045787 32 0.016
regulation of response to extracellular stimulus GO:0032104 20 0.016
peptidyl amino acid modification GO:0018193 116 0.016
oxidation reduction process GO:0055114 353 0.016
Yeast
regulation of cellular ketone metabolic process by positive regulation of transcription from rna polymerase ii promoter GO:0072366 10 0.016
Yeast
purine containing compound metabolic process GO:0072521 400 0.016
positive regulation of transcription from rna polymerase ii promoter in response to ethanol GO:0061410 3 0.016
Yeast
regulation of cell aging GO:0090342 4 0.016
negative regulation of chromatin silencing GO:0031936 25 0.016
Yeast
nuclear transport GO:0051169 165 0.015
fungal type cell wall biogenesis GO:0009272 80 0.015
Yeast
anion transport GO:0006820 145 0.015
regulation of dna replication GO:0006275 51 0.015
positive regulation of catabolic process GO:0009896 135 0.015
regulation of protein phosphorylation GO:0001932 75 0.015
protein targeting to vacuole GO:0006623 91 0.015
cellular carbohydrate metabolic process GO:0044262 135 0.015
Yeast
cell wall organization GO:0071555 146 0.014
organophosphate biosynthetic process GO:0090407 182 0.014
cell cycle checkpoint GO:0000075 82 0.014
positive regulation of sodium ion transport GO:0010765 1 0.014
Yeast
regulation of fatty acid beta oxidation GO:0031998 3 0.014
Yeast
regulation of kinase activity GO:0043549 71 0.013
fungal type cell wall organization GO:0031505 145 0.013
positive regulation of transcription on exit from mitosis from rna polymerase ii promoter GO:0007074 1 0.013
positive regulation of cell cycle process GO:0090068 31 0.013
negative regulation of ergosterol biosynthetic process GO:0010895 1 0.013
Yeast
cellular response to nitrosative stress GO:0071500 2 0.013
negative regulation of response to salt stress GO:1901001 2 0.012
Yeast
replicative cell aging GO:0001302 46 0.012
regulation of transcription by glucose GO:0046015 13 0.012
Yeast
nucleobase containing small molecule metabolic process GO:0055086 491 0.012
regulation of response to salt stress GO:1901000 2 0.012
Yeast
rna localization GO:0006403 112 0.012
negative regulation of transcription from rna polymerase ii promoter in response to stress GO:0097201 3 0.012
regulation of cytokinetic cell separation GO:0010590 1 0.012
organic hydroxy compound biosynthetic process GO:1901617 81 0.012
Yeast
hypotonic response GO:0006971 2 0.012
cellular response to reactive oxygen species GO:0034614 16 0.011
dna damage checkpoint GO:0000077 29 0.011
rna catabolic process GO:0006401 118 0.011
growth of unicellular organism as a thread of attached cells GO:0070783 105 0.011
Yeast
cellular response to acid chemical GO:0071229 16 0.011
Yeast
carbon catabolite repression of transcription GO:0045013 12 0.011
Yeast
regulation of cellular ketone metabolic process by regulation of transcription from rna polymerase ii promoter GO:0072364 12 0.011
Yeast
cell wall macromolecule metabolic process GO:0044036 27 0.011
Yeast
regulation of response to dna damage stimulus GO:2001020 17 0.011
regulation of cellular localization GO:0060341 50 0.011
response to uv GO:0009411 4 0.011
positive regulation of fatty acid oxidation GO:0046321 3 0.011
Yeast
positive regulation of transcription from rna polymerase ii promoter in response to oxidative stress GO:0036091 3 0.011
negative regulation of signaling GO:0023057 30 0.011
cellular response to hydrogen peroxide GO:0070301 10 0.011
response to drug GO:0042493 41 0.011
Yeast
dna replication GO:0006260 147 0.010
positive regulation of phosphate metabolic process GO:0045937 147 0.010
organelle assembly GO:0070925 118 0.010
sterol biosynthetic process GO:0016126 35 0.010
Yeast
negative regulation of molecular function GO:0044092 68 0.010
regulation of protein localization GO:0032880 62 0.010

RPN4 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org