Saccharomyces cerevisiae

213 known processes

RTF1 (YGL244W)

Rtf1p

(Aliases: CSL3)

RTF1 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
positive regulation of transcription elongation from rna polymerase ii promoter GO:0032968 38 0.994
transcription elongation from rna polymerase ii promoter GO:0006368 81 0.987
regulation of transcription from rna polymerase i promoter GO:0006356 36 0.986
positive regulation of macromolecule metabolic process GO:0010604 394 0.982
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.982
positive regulation of nucleic acid templated transcription GO:1903508 286 0.981
chromatin modification GO:0016568 200 0.981
regulation of chromatin modification GO:1903308 23 0.970
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.970
positive regulation of transcription from rna polymerase ii promoter GO:0045944 252 0.969
peptidyl lysine modification GO:0018205 77 0.969
covalent chromatin modification GO:0016569 119 0.963
histone modification GO:0016570 119 0.957
dna templated transcription elongation GO:0006354 91 0.956
cellular response to dna damage stimulus GO:0006974 287 0.947
positive regulation of biosynthetic process GO:0009891 336 0.944
positive regulation of dna templated transcription elongation GO:0032786 42 0.936
regulation of chromatin organization GO:1902275 23 0.936
negative regulation of macromolecule metabolic process GO:0010605 375 0.934
dna repair GO:0006281 236 0.928
regulation of histone modification GO:0031056 18 0.927
positive regulation of cellular biosynthetic process GO:0031328 336 0.923
positive regulation of gene expression GO:0010628 321 0.911
regulation of dna templated transcription elongation GO:0032784 44 0.911
regulation of transcription elongation from rna polymerase ii promoter GO:0034243 40 0.909
regulation of gene silencing GO:0060968 41 0.906
histone methylation GO:0016571 28 0.905
chromatin organization GO:0006325 242 0.903
regulation of chromosome organization GO:0033044 66 0.892
transcription from rna polymerase i promoter GO:0006360 63 0.886
positive regulation of rna biosynthetic process GO:1902680 286 0.860
negative regulation of cellular biosynthetic process GO:0031327 312 0.844
nucleotide excision repair GO:0006289 50 0.840
transcription coupled nucleotide excision repair GO:0006283 16 0.838
negative regulation of cellular metabolic process GO:0031324 407 0.822
positive regulation of rna metabolic process GO:0051254 294 0.818
histone h3 k4 methylation GO:0051568 18 0.800
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.780
positive regulation of transcription dna templated GO:0045893 286 0.770
positive regulation of transcription from rna polymerase i promoter GO:0045943 19 0.767
methylation GO:0032259 101 0.758
macromolecule methylation GO:0043414 85 0.746
negative regulation of biosynthetic process GO:0009890 312 0.741
negative regulation of gene expression epigenetic GO:0045814 147 0.712
phosphorylation of rna polymerase ii c terminal domain GO:0070816 20 0.711
histone ubiquitination GO:0016574 17 0.709
negative regulation of gene expression GO:0010629 312 0.705
positive regulation of transcription elongation from rna polymerase i promoter GO:2001209 7 0.685
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.680
regulation of chromatin silencing GO:0031935 39 0.667
chromatin silencing at telomere GO:0006348 84 0.645
gene silencing GO:0016458 151 0.634
dna templated transcription termination GO:0006353 42 0.631
regulation of response to dna damage stimulus GO:2001020 17 0.625
regulation of transcription elongation from rna polymerase i promoter GO:2001207 7 0.619
regulation of protein modification process GO:0031399 110 0.618
regulation of dna repair GO:0006282 14 0.612
regulation of gene expression epigenetic GO:0040029 147 0.608
regulation of cellular component organization GO:0051128 334 0.605
protein modification by small protein conjugation or removal GO:0070647 172 0.604
regulation of transcription coupled nucleotide excision repair GO:0090262 7 0.585
regulation of histone h2b ubiquitination GO:2001166 6 0.575
regulation of histone h2b conserved c terminal lysine ubiquitination GO:2001173 5 0.574
negative regulation of rna metabolic process GO:0051253 262 0.573
protein modification by small protein conjugation GO:0032446 144 0.570
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.542
regulation of nucleotide excision repair GO:2000819 7 0.541
regulation of organelle organization GO:0033043 243 0.499
mitotic cell cycle phase transition GO:0044772 141 0.496
cell cycle g1 s phase transition GO:0044843 64 0.487
transcription initiation from rna polymerase ii promoter GO:0006367 55 0.487
regulation of chromatin silencing at telomere GO:0031938 27 0.487
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.481
histone lysine methylation GO:0034968 26 0.470
regulation of protein ubiquitination GO:0031396 20 0.468
negative regulation of rna biosynthetic process GO:1902679 260 0.457
g1 s transition of mitotic cell cycle GO:0000082 64 0.453
positive regulation of organelle organization GO:0010638 85 0.452
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.436
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.425
protein alkylation GO:0008213 48 0.423
mrna processing GO:0006397 185 0.390
regulation of dna metabolic process GO:0051052 100 0.381
mrna 3 end processing GO:0031124 54 0.371
peptidyl amino acid modification GO:0018193 116 0.360
negative regulation of transcription dna templated GO:0045892 258 0.347
regulation of transcription by chromatin organization GO:0034401 19 0.330
rna 3 end processing GO:0031123 88 0.324
cellular response to chemical stimulus GO:0070887 315 0.307
regulation of protein metabolic process GO:0051246 237 0.306
negative regulation of nucleic acid templated transcription GO:1903507 260 0.299
mitotic cell cycle process GO:1903047 294 0.295
cellular response to organic substance GO:0071310 159 0.292
phosphorylation GO:0016310 291 0.288
regulation of transcription initiation from rna polymerase ii promoter GO:0060260 19 0.275
chromatin silencing GO:0006342 147 0.273
regulation of histone methylation GO:0031060 8 0.270
peptidyl lysine methylation GO:0018022 24 0.266
meiotic cell cycle GO:0051321 272 0.264
meiotic cell cycle process GO:1903046 229 0.264
protein ubiquitination GO:0016567 118 0.251
regulation of cellular protein metabolic process GO:0032268 232 0.248
protein phosphorylation GO:0006468 197 0.238
meiotic nuclear division GO:0007126 163 0.232
protein methylation GO:0006479 48 0.230
response to organic substance GO:0010033 182 0.229
positive regulation of cellular component organization GO:0051130 116 0.218
mrna metabolic process GO:0016071 269 0.218
transcription elongation from rna polymerase i promoter GO:0006362 10 0.197
carboxylic acid metabolic process GO:0019752 338 0.183
peptidyl lysine trimethylation GO:0018023 8 0.178
multi organism process GO:0051704 233 0.177
positive regulation of cellular protein metabolic process GO:0032270 89 0.167
organelle fission GO:0048285 272 0.164
cell cycle phase transition GO:0044770 144 0.162
phosphorylation of rna polymerase ii c terminal domain serine 2 residues GO:0071619 4 0.156
regulation of cellular ketone metabolic process GO:0010565 42 0.153
response to abiotic stimulus GO:0009628 159 0.152
regulation of biological quality GO:0065008 391 0.150
organic acid metabolic process GO:0006082 352 0.149
regulation of dna templated transcription initiation GO:2000142 19 0.147
regulation of protein complex assembly GO:0043254 77 0.143
response to chemical GO:0042221 390 0.142
response to external stimulus GO:0009605 158 0.140
dna templated transcription initiation GO:0006352 71 0.138
cellular ketone metabolic process GO:0042180 63 0.137
mitotic cell cycle GO:0000278 306 0.137
anatomical structure development GO:0048856 160 0.136
ascospore formation GO:0030437 107 0.136
cell communication GO:0007154 345 0.133
response to extracellular stimulus GO:0009991 156 0.128
positive regulation of chromatin modification GO:1903310 13 0.124
positive regulation of protein modification process GO:0031401 49 0.119
positive regulation of protein metabolic process GO:0051247 93 0.116
regulation of cellular response to stress GO:0080135 50 0.116
positive regulation of histone modification GO:0031058 12 0.114
histone h2b conserved c terminal lysine ubiquitination GO:0071894 6 0.111
snorna processing GO:0043144 34 0.106
regulation of phosphorus metabolic process GO:0051174 230 0.104
single organism signaling GO:0044700 208 0.101
nuclear division GO:0000280 263 0.100
regulation of cellular component biogenesis GO:0044087 112 0.098
nucleocytoplasmic transport GO:0006913 163 0.097
developmental process GO:0032502 261 0.092
histone h3 k4 trimethylation GO:0080182 3 0.091
signal transduction GO:0007165 208 0.090
regulation of molecular function GO:0065009 320 0.085
regulation of response to stress GO:0080134 57 0.084
single organism developmental process GO:0044767 258 0.084
regulation of histone ubiquitination GO:0033182 7 0.078
response to nutrient levels GO:0031667 150 0.077
cell aging GO:0007569 70 0.077
protein monoubiquitination GO:0006513 13 0.077
rna polymerase ii transcriptional preinitiation complex assembly GO:0051123 40 0.077
modification dependent macromolecule catabolic process GO:0043632 203 0.076
positive regulation of phosphorylation GO:0042327 33 0.076
regulation of protein phosphorylation GO:0001932 75 0.074
positive regulation of protein phosphorylation GO:0001934 28 0.073
cellular response to oxygen containing compound GO:1901701 43 0.070
protein complex biogenesis GO:0070271 314 0.070
regulation of cellular amine metabolic process GO:0033238 21 0.069
regulation of response to stimulus GO:0048583 157 0.068
negative regulation of dna metabolic process GO:0051053 36 0.066
negative regulation of chromatin modification GO:1903309 9 0.063
regulation of cellular amino acid metabolic process GO:0006521 16 0.063
protein complex assembly GO:0006461 302 0.062
regulation of phosphate metabolic process GO:0019220 230 0.059
regulation of cell cycle phase transition GO:1901987 70 0.058
regulation of transcription from rna polymerase ii promoter in response to stress GO:0043618 51 0.057
dna recombination GO:0006310 172 0.055
oxoacid metabolic process GO:0043436 351 0.053
cellular response to extracellular stimulus GO:0031668 150 0.053
cellular component disassembly GO:0022411 86 0.052
signaling GO:0023052 208 0.050
chromatin remodeling GO:0006338 80 0.050
regulation of protein modification by small protein conjugation or removal GO:1903320 29 0.049
regulation of transcription involved in g1 s transition of mitotic cell cycle GO:0000083 27 0.048
dna templated transcriptional preinitiation complex assembly GO:0070897 51 0.047
amine metabolic process GO:0009308 51 0.047
cellular response to external stimulus GO:0071496 150 0.046
response to organic cyclic compound GO:0014070 1 0.046
cell cycle checkpoint GO:0000075 82 0.046
cell development GO:0048468 107 0.043
intracellular signal transduction GO:0035556 112 0.043
positive regulation of transcription initiation from rna polymerase ii promoter GO:0060261 13 0.042
response to temperature stimulus GO:0009266 74 0.042
meiosis i GO:0007127 92 0.042
posttranscriptional regulation of gene expression GO:0010608 115 0.042
dna replication GO:0006260 147 0.041
ncrna processing GO:0034470 330 0.040
reproductive process GO:0022414 248 0.039
cellular response to heat GO:0034605 53 0.039
regulation of catabolic process GO:0009894 199 0.038
anatomical structure morphogenesis GO:0009653 160 0.037
macromolecular complex disassembly GO:0032984 80 0.037
ribonucleoprotein complex assembly GO:0022618 143 0.034
protein complex localization GO:0031503 32 0.034
regulation of histone h3 k4 methylation GO:0051569 5 0.033
regulation of dna recombination GO:0000018 24 0.032
negative regulation of cellular protein metabolic process GO:0032269 85 0.032
protein complex disassembly GO:0043241 70 0.031
sexual sporulation GO:0034293 113 0.031
negative regulation of transcription from rna polymerase ii promoter GO:0000122 137 0.031
response to endogenous stimulus GO:0009719 26 0.030
positive regulation of chromosome organization GO:2001252 20 0.030
positive regulation of cellular amine metabolic process GO:0033240 10 0.030
regulation of dna templated transcription in response to stress GO:0043620 51 0.030
positive regulation of phosphate metabolic process GO:0045937 147 0.029
carbohydrate derivative metabolic process GO:1901135 549 0.029
reciprocal meiotic recombination GO:0007131 54 0.028
ribonucleoprotein complex subunit organization GO:0071826 152 0.028
regulation of cell cycle process GO:0010564 150 0.028
lipid metabolic process GO:0006629 269 0.027
cellular amine metabolic process GO:0044106 51 0.027
cellular response to nutrient levels GO:0031669 144 0.027
cellular response to endogenous stimulus GO:0071495 22 0.027
organophosphate metabolic process GO:0019637 597 0.026
chromatin silencing at silent mating type cassette GO:0030466 53 0.026
regulation of phosphorylation GO:0042325 86 0.025
nucleosome organization GO:0034728 63 0.025
negative regulation of gene silencing GO:0060969 27 0.025
negative regulation of molecular function GO:0044092 68 0.025
reproduction of a single celled organism GO:0032505 191 0.025
aging GO:0007568 71 0.025
regulation of phosphorylation of rna polymerase ii c terminal domain GO:1901407 5 0.025
positive regulation of apoptotic process GO:0043065 3 0.024
mitotic dna integrity checkpoint GO:0044774 18 0.024
positive regulation of cell death GO:0010942 3 0.023
negative regulation of mitotic cell cycle phase transition GO:1901991 57 0.023
response to nutrient GO:0007584 52 0.023
regulation of histone h3 k36 methylation GO:0000414 5 0.023
vacuole organization GO:0007033 75 0.022
poly a mrna export from nucleus GO:0016973 24 0.022
sporulation resulting in formation of a cellular spore GO:0030435 129 0.022
positive regulation of cellular amino acid metabolic process GO:0045764 7 0.021
negative regulation of cell cycle phase transition GO:1901988 59 0.021
nucleobase containing compound transport GO:0015931 124 0.021
regulation of localization GO:0032879 127 0.021
positive regulation of growth GO:0045927 19 0.021
organelle localization GO:0051640 128 0.020
response to heat GO:0009408 69 0.020
single organism catabolic process GO:0044712 619 0.019
negative regulation of transcription from rna polymerase i promoter GO:0016479 8 0.019
dna integrity checkpoint GO:0031570 41 0.019
regulation of catalytic activity GO:0050790 307 0.019
translation GO:0006412 230 0.019
sexual sporulation resulting in formation of a cellular spore GO:0043935 113 0.019
cellular carbohydrate biosynthetic process GO:0034637 49 0.018
cellular amino acid metabolic process GO:0006520 225 0.018
multi organism reproductive process GO:0044703 216 0.017
regulation of sequence specific dna binding transcription factor activity GO:0051090 6 0.017
cell differentiation GO:0030154 161 0.017
negative regulation of chromosome organization GO:2001251 39 0.017
histone h3 k36 methylation GO:0010452 6 0.017
organonitrogen compound catabolic process GO:1901565 404 0.017
reproductive process in single celled organism GO:0022413 145 0.016
negative regulation of chromatin silencing GO:0031936 25 0.016
snorna metabolic process GO:0016074 40 0.016
multi organism cellular process GO:0044764 120 0.016
regulation of signal transduction GO:0009966 114 0.016
positive regulation of programmed cell death GO:0043068 3 0.016
response to uv GO:0009411 4 0.016
invasive filamentous growth GO:0036267 65 0.016
negative regulation of phosphorus metabolic process GO:0010563 49 0.015
nucleobase containing small molecule metabolic process GO:0055086 491 0.015
positive regulation of rna polymerase ii transcriptional preinitiation complex assembly GO:0045899 11 0.015
recombinational repair GO:0000725 64 0.015
sporulation GO:0043934 132 0.015
protein dna complex subunit organization GO:0071824 153 0.015
maintenance of protein location GO:0045185 53 0.014
maintenance of location in cell GO:0051651 58 0.014
filamentous growth GO:0030447 124 0.014
ncrna 3 end processing GO:0043628 44 0.014
cell surface receptor signaling pathway GO:0007166 38 0.014
histone exchange GO:0043486 18 0.014
cellular lipid metabolic process GO:0044255 229 0.013
invasive growth in response to glucose limitation GO:0001403 61 0.013
regulation of cell cycle GO:0051726 195 0.013
regulation of dna replication GO:0006275 51 0.013
nucleoside catabolic process GO:0009164 335 0.013
regulation of mitotic cell cycle phase transition GO:1901990 68 0.013
cellular developmental process GO:0048869 191 0.013
regulation of dna dependent dna replication initiation GO:0030174 21 0.013
trna processing GO:0008033 101 0.013
chromatin silencing at rdna GO:0000183 32 0.012
protein processing GO:0016485 64 0.012
single organism cellular localization GO:1902580 375 0.012
filamentous growth of a population of unicellular organisms GO:0044182 109 0.012
nitrogen compound transport GO:0071705 212 0.012
regulation of cellular catabolic process GO:0031329 195 0.012
aromatic compound catabolic process GO:0019439 491 0.012
double strand break repair GO:0006302 105 0.012
histone acetylation GO:0016573 51 0.012
response to oxygen containing compound GO:1901700 61 0.011
positive regulation of protein complex assembly GO:0031334 39 0.011
regulation of cell communication GO:0010646 124 0.011
negative regulation of dna recombination GO:0045910 13 0.011
cellular response to biotic stimulus GO:0071216 8 0.011
maintenance of dna repeat elements GO:0043570 20 0.011
organic acid biosynthetic process GO:0016053 152 0.011
regulation of proteolysis GO:0030162 44 0.011
developmental process involved in reproduction GO:0003006 159 0.011
negative regulation of signaling GO:0023057 30 0.011
cellular response to uv GO:0034644 3 0.010
peroxisome organization GO:0007031 68 0.010
ribonucleoprotein complex export from nucleus GO:0071426 46 0.010
response to starvation GO:0042594 96 0.010
mitotic cell cycle checkpoint GO:0007093 56 0.010
protein catabolic process GO:0030163 221 0.010
growth GO:0040007 157 0.010
nuclear transport GO:0051169 165 0.010
positive regulation of dna metabolic process GO:0051054 26 0.010
rna localization GO:0006403 112 0.010
regulation of rna polymerase ii transcriptional preinitiation complex assembly GO:0045898 13 0.010

RTF1 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org