Saccharomyces cerevisiae

54 known processes

VPS3 (YDR495C)

Vps3p

(Aliases: VPL3,VPT17,PEP6)

VPS3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
vesicle mediated transport GO:0016192 335 0.888
protein localization to vacuole GO:0072665 92 0.857
protein targeting to vacuole GO:0006623 91 0.847
vacuolar transport GO:0007034 145 0.836
establishment of protein localization to vacuole GO:0072666 91 0.775
golgi vesicle transport GO:0048193 188 0.726
endosomal transport GO:0016197 86 0.710
post golgi vesicle mediated transport GO:0006892 72 0.654
vesicle organization GO:0016050 68 0.638
organelle fusion GO:0048284 85 0.605
cell communication GO:0007154 345 0.573
establishment of protein localization GO:0045184 367 0.558
establishment of protein localization to organelle GO:0072594 278 0.547
vesicle fusion GO:0006906 33 0.545
protein localization to organelle GO:0033365 337 0.502
autophagy GO:0006914 106 0.493
intracellular protein transport GO:0006886 319 0.475
protein targeting GO:0006605 272 0.466
single organism membrane organization GO:0044802 275 0.454
single organism cellular localization GO:1902580 375 0.425
protein transport GO:0015031 345 0.384
regulation of cellular component biogenesis GO:0044087 112 0.373
developmental process GO:0032502 261 0.339
membrane organization GO:0061024 276 0.336
regulation of vesicle fusion GO:0031338 10 0.331
macroautophagy GO:0016236 55 0.311
exocytosis GO:0006887 42 0.307
membrane fusion GO:0061025 73 0.306
signaling GO:0023052 208 0.280
protein complex assembly GO:0006461 302 0.251
golgi to endosome transport GO:0006895 17 0.234
membrane docking GO:0022406 22 0.222
response to nutrient levels GO:0031667 150 0.204
signal transduction GO:0007165 208 0.193
single organism signaling GO:0044700 208 0.192
single organism developmental process GO:0044767 258 0.189
regulation of protein complex assembly GO:0043254 77 0.188
late endosome to vacuole transport GO:0045324 42 0.185
single organism membrane fusion GO:0044801 71 0.184
response to external stimulus GO:0009605 158 0.180
regulation of vesicle mediated transport GO:0060627 39 0.174
protein complex biogenesis GO:0070271 314 0.171
snare complex assembly GO:0035493 10 0.163
regulation of cellular component organization GO:0051128 334 0.161
cellular protein complex assembly GO:0043623 209 0.152
cellular developmental process GO:0048869 191 0.150
regulation of snare complex assembly GO:0035542 9 0.149
secretion by cell GO:0032940 50 0.146
cellular response to nutrient levels GO:0031669 144 0.134
sporulation resulting in formation of a cellular spore GO:0030435 129 0.131
cellular response to external stimulus GO:0071496 150 0.129
regulation of organelle organization GO:0033043 243 0.117
regulation of cell communication GO:0010646 124 0.114
response to extracellular stimulus GO:0009991 156 0.110
sexual reproduction GO:0019953 216 0.108
regulation of vacuole organization GO:0044088 20 0.108
anatomical structure development GO:0048856 160 0.106
vacuole organization GO:0007033 75 0.105
response to starvation GO:0042594 96 0.101
anatomical structure morphogenesis GO:0009653 160 0.099
intracellular signal transduction GO:0035556 112 0.098
cell differentiation GO:0030154 161 0.098
cellular response to starvation GO:0009267 90 0.088
vesicle docking GO:0048278 16 0.085
regulation of transport GO:0051049 85 0.083
multi organism process GO:0051704 233 0.080
meiotic cell cycle process GO:1903046 229 0.079
regulation of biological quality GO:0065008 391 0.075
retrograde transport endosome to golgi GO:0042147 33 0.073
multi organism reproductive process GO:0044703 216 0.072
regulation of phosphorus metabolic process GO:0051174 230 0.071
regulation of response to stimulus GO:0048583 157 0.069
sporulation GO:0043934 132 0.068
chromatin organization GO:0006325 242 0.066
reproduction of a single celled organism GO:0032505 191 0.063
organelle inheritance GO:0048308 51 0.063
late endosome to vacuole transport via multivesicular body sorting pathway GO:0032511 26 0.063
ascospore formation GO:0030437 107 0.061
phosphorylation GO:0016310 291 0.060
regulation of localization GO:0032879 127 0.057
negative regulation of rna biosynthetic process GO:1902679 260 0.056
endocytosis GO:0006897 90 0.056
spore wall biogenesis GO:0070590 52 0.054
macromolecule catabolic process GO:0009057 383 0.054
regulation of vacuole fusion non autophagic GO:0032889 14 0.052
anatomical structure formation involved in morphogenesis GO:0048646 136 0.050
protein modification by small protein conjugation GO:0032446 144 0.050
alpha amino acid metabolic process GO:1901605 124 0.050
cell development GO:0048468 107 0.050
developmental process involved in reproduction GO:0003006 159 0.049
endosome transport via multivesicular body sorting pathway GO:0032509 27 0.049
cell division GO:0051301 205 0.049
negative regulation of biosynthetic process GO:0009890 312 0.049
growth GO:0040007 157 0.049
cellular response to extracellular stimulus GO:0031668 150 0.048
organic cyclic compound catabolic process GO:1901361 499 0.048
secretion GO:0046903 50 0.048
microautophagy GO:0016237 43 0.047
golgi to vacuole transport GO:0006896 23 0.047
negative regulation of macromolecule metabolic process GO:0010605 375 0.044
regulation of autophagy GO:0010506 18 0.044
meiotic cell cycle GO:0051321 272 0.043
single organism catabolic process GO:0044712 619 0.043
response to chemical GO:0042221 390 0.042
single organism reproductive process GO:0044702 159 0.042
protein localization to membrane GO:0072657 102 0.042
positive regulation of cellular component organization GO:0051130 116 0.041
regulation of phosphate metabolic process GO:0019220 230 0.040
cellular protein catabolic process GO:0044257 213 0.040
piecemeal microautophagy of nucleus GO:0034727 33 0.040
regulation of signaling GO:0023051 119 0.040
rna splicing GO:0008380 131 0.039
organelle assembly GO:0070925 118 0.039
negative regulation of response to stimulus GO:0048585 40 0.038
cell budding GO:0007114 48 0.038
vesicle docking involved in exocytosis GO:0006904 8 0.038
response to pheromone GO:0019236 92 0.037
cellular macromolecule catabolic process GO:0044265 363 0.037
reproductive process GO:0022414 248 0.035
cvt pathway GO:0032258 37 0.035
positive regulation of rna metabolic process GO:0051254 294 0.035
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.035
homeostatic process GO:0042592 227 0.034
positive regulation of rna biosynthetic process GO:1902680 286 0.034
positive regulation of cellular biosynthetic process GO:0031328 336 0.033
response to organic substance GO:0010033 182 0.033
endosome organization GO:0007032 9 0.033
organophosphate metabolic process GO:0019637 597 0.032
mrna metabolic process GO:0016071 269 0.032
lipid metabolic process GO:0006629 269 0.031
protein ubiquitination GO:0016567 118 0.031
covalent chromatin modification GO:0016569 119 0.030
sexual sporulation GO:0034293 113 0.029
cellular response to chemical stimulus GO:0070887 315 0.029
conjugation GO:0000746 107 0.029
ascospore wall biogenesis GO:0070591 52 0.028
cellular cation homeostasis GO:0030003 100 0.028
chromosome segregation GO:0007059 159 0.027
regulation of signal transduction GO:0009966 114 0.027
negative regulation of cell communication GO:0010648 33 0.027
cellular amino acid metabolic process GO:0006520 225 0.027
reproductive process in single celled organism GO:0022413 145 0.027
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.027
regulation of dna metabolic process GO:0051052 100 0.026
chromatin modification GO:0016568 200 0.026
negative regulation of transcription dna templated GO:0045892 258 0.026
negative regulation of signal transduction GO:0009968 30 0.025
nucleotide metabolic process GO:0009117 453 0.025
positive regulation of biosynthetic process GO:0009891 336 0.025
regulation of protein metabolic process GO:0051246 237 0.024
negative regulation of cellular metabolic process GO:0031324 407 0.024
negative regulation of transcription from rna polymerase ii promoter GO:0000122 137 0.024
ribosomal small subunit biogenesis GO:0042274 124 0.024
regulation of cellular catabolic process GO:0031329 195 0.024
cellular homeostasis GO:0019725 138 0.024
nucleobase containing small molecule metabolic process GO:0055086 491 0.024
conjugation with cellular fusion GO:0000747 106 0.023
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.023
actin filament based process GO:0030029 104 0.023
cellular component morphogenesis GO:0032989 97 0.023
vacuole fusion non autophagic GO:0042144 40 0.023
protein targeting to membrane GO:0006612 52 0.023
carbohydrate derivative metabolic process GO:1901135 549 0.023
cellular lipid metabolic process GO:0044255 229 0.022
protein catabolic process GO:0030163 221 0.022
histone modification GO:0016570 119 0.022
cellular chemical homeostasis GO:0055082 123 0.022
phospholipid metabolic process GO:0006644 125 0.022
rna catabolic process GO:0006401 118 0.022
chemical homeostasis GO:0048878 137 0.022
positive regulation of transcription dna templated GO:0045893 286 0.021
cellular nitrogen compound catabolic process GO:0044270 494 0.021
spore wall assembly GO:0042244 52 0.020
modification dependent protein catabolic process GO:0019941 181 0.020
positive regulation of transcription from rna polymerase ii promoter GO:0045944 252 0.020
cation homeostasis GO:0055080 105 0.020
ribonucleoprotein complex subunit organization GO:0071826 152 0.020
ascospore wall assembly GO:0030476 52 0.020
negative regulation of cellular biosynthetic process GO:0031327 312 0.019
aromatic compound catabolic process GO:0019439 491 0.019
negative regulation of gene expression GO:0010629 312 0.018
ion homeostasis GO:0050801 118 0.018
cellular ion homeostasis GO:0006873 112 0.018
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.017
sexual sporulation resulting in formation of a cellular spore GO:0043935 113 0.017
oxidation reduction process GO:0055114 353 0.017
carboxylic acid metabolic process GO:0019752 338 0.017
organic acid metabolic process GO:0006082 352 0.017
macromolecular complex disassembly GO:0032984 80 0.017
cell wall assembly GO:0070726 54 0.017
sphingolipid metabolic process GO:0006665 41 0.017
negative regulation of protein metabolic process GO:0051248 85 0.017
establishment or maintenance of cell polarity GO:0007163 96 0.016
cellular response to organic substance GO:0071310 159 0.016
cellular response to dna damage stimulus GO:0006974 287 0.016
regulation of molecular function GO:0065009 320 0.016
regulation of gene expression epigenetic GO:0040029 147 0.016
dna repair GO:0006281 236 0.016
organic acid biosynthetic process GO:0016053 152 0.016
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.016
positive regulation of secretion by cell GO:1903532 2 0.016
positive regulation of secretion GO:0051047 2 0.016
cytoskeleton organization GO:0007010 230 0.015
carbohydrate derivative catabolic process GO:1901136 339 0.015
positive regulation of programmed cell death GO:0043068 3 0.015
positive regulation of exocytosis GO:0045921 2 0.015
positive regulation of macromolecule metabolic process GO:0010604 394 0.015
fungal type cell wall biogenesis GO:0009272 80 0.015
heterocycle catabolic process GO:0046700 494 0.015
organelle localization GO:0051640 128 0.015
negative regulation of rna metabolic process GO:0051253 262 0.015
ribonucleoside triphosphate metabolic process GO:0009199 356 0.015
glycosyl compound catabolic process GO:1901658 335 0.015
purine ribonucleoside metabolic process GO:0046128 380 0.014
nucleobase containing compound catabolic process GO:0034655 479 0.014
pigment metabolic process GO:0042440 23 0.014
vacuole inheritance GO:0000011 16 0.014
regulation of cellular response to stress GO:0080135 50 0.014
ribonucleoside triphosphate catabolic process GO:0009203 327 0.014
actin cytoskeleton organization GO:0030036 100 0.014
multi organism cellular process GO:0044764 120 0.014
posttranscriptional regulation of gene expression GO:0010608 115 0.013
autophagic vacuole assembly GO:0000045 16 0.013
glutamine family amino acid metabolic process GO:0009064 31 0.013
regulation of macroautophagy GO:0016241 15 0.013
negative regulation of signaling GO:0023057 30 0.013
positive regulation of cell death GO:0010942 3 0.013
ribose phosphate metabolic process GO:0019693 384 0.013
regulation of dna replication GO:0006275 51 0.013
membrane lipid metabolic process GO:0006643 67 0.013
proteasomal protein catabolic process GO:0010498 141 0.012
negative regulation of nuclear division GO:0051784 62 0.012
mrna processing GO:0006397 185 0.012
regulation of catalytic activity GO:0050790 307 0.012
nitrogen compound transport GO:0071705 212 0.012
response to organic cyclic compound GO:0014070 1 0.012
small molecule catabolic process GO:0044282 88 0.012
positive regulation of nucleic acid templated transcription GO:1903508 286 0.012
positive regulation of organelle organization GO:0010638 85 0.012
nucleoside triphosphate metabolic process GO:0009141 364 0.012
purine nucleoside triphosphate catabolic process GO:0009146 329 0.012
protein transmembrane transport GO:0071806 82 0.012
positive regulation of gene expression GO:0010628 321 0.011
asexual reproduction GO:0019954 48 0.011
nuclear division GO:0000280 263 0.011
transmembrane transport GO:0055085 349 0.011
purine nucleoside catabolic process GO:0006152 330 0.011
proteolysis GO:0006508 268 0.011
glycosyl compound metabolic process GO:1901657 398 0.011
nucleoside catabolic process GO:0009164 335 0.011
nucleoside phosphate catabolic process GO:1901292 331 0.011
organonitrogen compound catabolic process GO:1901565 404 0.011
positive regulation of cytoplasmic transport GO:1903651 4 0.011
regulation of cellular localization GO:0060341 50 0.011
negative regulation of cellular component organization GO:0051129 109 0.011
localization within membrane GO:0051668 29 0.011
negative regulation of organelle organization GO:0010639 103 0.011
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.011
response to topologically incorrect protein GO:0035966 38 0.011
organonitrogen compound biosynthetic process GO:1901566 314 0.011
dna replication GO:0006260 147 0.010
establishment of protein localization to membrane GO:0090150 99 0.010
negative regulation of protein modification process GO:0031400 37 0.010
meiotic nuclear division GO:0007126 163 0.010
detection of stimulus GO:0051606 4 0.010
phosphatidylinositol metabolic process GO:0046488 62 0.010
regulation of response to stress GO:0080134 57 0.010
cellular response to pheromone GO:0071444 88 0.010
protein phosphorylation GO:0006468 197 0.010
mrna catabolic process GO:0006402 93 0.010
nucleoside phosphate metabolic process GO:0006753 458 0.010

VPS3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.012