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Process View

Saccharomyces cerevisiae

16 genes annotated in yeast

transcription coupled nucleotide excision repair

The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.

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In addition to gene-name show these genes:

Known genes in the process in yeast Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "transcription coupled nucleotide excision repair"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "transcription coupled nucleotide excision repair" (in gray)

Name	Description	Probability	Func Analog Organism
RTF1	Rtf1p	0.838
CTR9	Ctr9p	0.820
HPR1	Hpr1p	0.538
SPT5	Spt5p	0.333
SPT16	Spt16p	0.242
GBP2	Gbp2p	0.241
RPB3	Rpb3p	0.234
PAF1	Paf1p	0.194
LEO1	Leo1p	0.102
DST1	Dst1p	0.090
MEX67	Mex67p	0.082
SSL1	Ssl1p	0.073
RPO21	Rpo21p	0.072
THO2	Tho2p	0.067
THP2	Thp2p	0.063
SUB1	Sub1p	0.058
SUS1	Sus1p	0.051
NRD1	Nrd1p	0.049
HOR2	Hor2p	0.042
SPT6	Spt6p	0.040
CKA1	Cka1p	0.039
TFA1	Tfa1p	0.035
PSY4	Psy4p	0.034
MSS116	Mss116p	0.031
YLR264C-A	hypothetical protein	0.029
MPT5	Mpt5p	0.029
CKB1	Ckb1p	0.028
SRD1	Srd1p	0.028
LEU2	Leu2p	0.027
DED1	Ded1p	0.026
IML1	Iml1p	0.026
MMS1	Mms1p	0.026
HRB1	Hrb1p	0.026
BRN1	Brn1p	0.025
HXT3	Hxt3p	0.024
TEX1	Tex1p	0.024
UME1	Ume1p	0.023
YLR162W	hypothetical protein	0.023
APN1	Apn1p	0.023
MOT2	Mot2p	0.023
ARP10	Arp10p	0.023
YOL038C-A	hypothetical protein	0.023
TYE7	Tye7p	0.022
ECM30	Ecm30p	0.022
MER1	Mer1p	0.022
SWT1	Swt1p	0.021
URA3	Ura3p	0.021
SPT4	Spt4p	0.020
HST3	Hst3p	0.020
RAD7	Rad7p	0.020
MFT1	Mft1p	0.019
HDA2	Hda2p	0.019
CAB3	Cab3p	0.019
ARG8	Arg8p	0.019
HO	Hop	0.018
YLR042C	hypothetical protein	0.018
YAR068W	hypothetical protein	0.018
SEM1	Sem1p	0.018
ATP6	Atp6p	0.018
OPI1	Opi1p	0.018
YIL151C	hypothetical protein	0.017
SPL2	Spl2p	0.017
CUP1-1	Cup1-1p	0.017
SWC7	Swc7p	0.017
YBR013C	hypothetical protein	0.017
THP3	Thp3p	0.016
YPR157W	hypothetical protein	0.016
YIR035C	hypothetical protein	0.016
YLR422W	hypothetical protein	0.016
RAD18	Rad18p	0.016
HMO1	Hmo1p	0.016
FMT1	Fmt1p	0.016
APL5	Apl5p	0.015
STO1	Sto1p	0.015
AUA1	Aua1p	0.015
HPF1	Hpf1p	0.015
GYL1	Gyl1p	0.015
OPT2	Opt2p	0.015
BSC1	Bsc1p	0.015
SPE3	Spe3p	0.015
ZPS1	Zps1p	0.015
SWD3	Swd3p	0.015
CPD1	Cpd1p	0.014
RXT3	Rxt3p	0.014
TFG1	Tfg1p	0.014
ALT2	Alt2p	0.014
BAT2	Bat2p	0.014
MF(ALPHA)2	Mf(alpha)2p	0.014
YKR075C	hypothetical protein	0.014
YOL013W-A	hypothetical protein	0.014
CRP1	Crp1p	0.014
UPS3	Ups3p	0.014
YOL014W	hypothetical protein	0.014
PCL9	Pcl9p	0.014
YNL234W	hypothetical protein	0.013
ARO10	Aro10p	0.013
SCM4	Scm4p	0.013
CHA1	Cha1p	0.013
RPL41A	Rpl41ap	0.013
YML003W	hypothetical protein	0.013
IZH4	Izh4p	0.013
YBL044W	hypothetical protein	0.013
SPT8	Spt8p	0.013
OAF1	Oaf1p	0.013
DUR1,2	Dur1,2p	0.013
COS12	Cos12p	0.013
THO1	Tho1p	0.013
FSH1	Fsh1p	0.013
YAL037C-A	hypothetical protein	0.013
MFA2	Mfa2p	0.013
BIO3	Bio3p	0.013
RRN5	Rrn5p	0.012
BNA4	Bna4p	0.012
NUP60	Nup60p	0.012
YAR066W	hypothetical protein	0.012
YLR040C	hypothetical protein	0.012
FAA2	Faa2p	0.012
SET2	Set2p	0.012
YAL064W	hypothetical protein	0.012
YPR096C	hypothetical protein	0.012
OSH3	Osh3p	0.012
YJR120W	hypothetical protein	0.012
SEN1	Sen1p	0.012
KNH1	Knh1p	0.012
DIC1	Dic1p	0.012
PRS2	Prs2p	0.012
GLN1	Gln1p	0.012
CAR1	Car1p	0.012
WSC4	Wsc4p	0.012
YCR102C	hypothetical protein	0.012
RAD16	Rad16p	0.012
TSC3	Tsc3p	0.012
YDL085C-A	hypothetical protein	0.012
RNP1	Rnp1p	0.012
PTR2	Ptr2p	0.012
ADH2	Adh2p	0.012
SSL2	Ssl2p	0.011	Human
YNL067W-B	hypothetical protein	0.011
SRX1	Srx1p	0.011
ARR2	Arr2p	0.011
YHR035W	hypothetical protein	0.011
TIR3	Tir3p	0.011
REE1	Ree1p	0.011
AAD6	Aad6p	0.011
YGL006W-A	hypothetical protein	0.011
ENA5	Ena5p	0.011
RAD4	Rad4p	0.011
ELF1	Elf1p	0.011
SWM2	Swm2p	0.011
NRG2	Nrg2p	0.011
PEX1	Pex1p	0.011
YMR317W	hypothetical protein	0.011
MF(ALPHA)1	Mf(alpha)1p	0.011
LCL1	Lcl1p	0.011
ESC1	Esc1p	0.011
BDS1	Bds1p	0.011
NAT1	Nat1p	0.011
LRP1	Lrp1p	0.011
YIR042C	hypothetical protein	0.011
YPL067C	hypothetical protein	0.011
THG1	Thg1p	0.010
YJL160C	hypothetical protein	0.010
PBP4	Pbp4p	0.010
DIF1	Dif1p	0.010
YJL107C	hypothetical protein	0.010
YOR022C	hypothetical protein	0.010
PHM6	Phm6p	0.010
WSS1	Wss1p	0.010
BIO2	Bio2p	0.010
YJL181W	hypothetical protein	0.010
SAE2	Sae2p	0.010
KRE29	Kre29p	0.010
YKR041W	hypothetical protein	0.010
RAD1	Rad1p	0.010
YGL036W	hypothetical protein	0.010
RMD6	Rmd6p	0.010
AAD15	Aad15p	0.010
YNL018C	hypothetical protein	0.010
NCE103	Nce103p	0.010
YDR034C-A	hypothetical protein	0.010
SPT2	Spt2p	0.010
MET8	Met8p	0.010
YLR460C	hypothetical protein	0.010