IMP

Process View

Saccharomyces cerevisiae

40 genes annotated in yeast

rna polymerase ii transcriptional preinitiation complex assembly

The aggregation, arrangement and bonding together of proteins on an RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription by RNA polymerase.

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Known genes in the process in yeast Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "rna polymerase ii transcriptional preinitiation complex assembly"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "rna polymerase ii transcriptional preinitiation complex assembly" (in gray)

Name	Description	Probability
SPT15	Spt15p	1.000
TAF10	Taf10p	1.000
TAF12	Taf12p	0.996
TAF4	Taf4p	0.994
TAF3	Taf3p	0.967
TAF11	Taf11p	0.965
TAF7	Taf7p	0.961
TAF8	Taf8p	0.945
TAF6	Taf6p	0.927
TAF13	Taf13p	0.919
TAF5	Taf5p	0.907
TFG2	Tfg2p	0.870
MED7	Med7p	0.859
RPT6	Rpt6p	0.803
TFG1	Tfg1p	0.786
MOT1	Mot1p	0.777
GAL11	Gal11p	0.737
SRB6	Srb6p	0.732
TAF9	Taf9p	0.720
RPO21	Rpo21p	0.677
SRB5	Srb5p	0.662
MED6	Med6p	0.633
MED8	Med8p	0.577
NUT2	Nut2p	0.551
RPT1	Rpt1p	0.491
RGR1	Rgr1p	0.458
MED2	Med2p	0.411
SRB4	Srb4p	0.411
TOA2	Toa2p	0.395
HHT1	Hht1p	0.380
SUA7	Sua7p	0.347
TOA1	Toa1p	0.345
ROX3	Rox3p	0.337
MED4	Med4p	0.336
TFA1	Tfa1p	0.318
RPN1	Rpn1p	0.311
SPT16	Spt16p	0.306
RPT4	Rpt4p	0.304
RPN2	Rpn2p	0.295
BRF1	Brf1p	0.295
RPB4	Rpb4p	0.271
ADA2	Ada2p	0.245
TAF14	Taf14p	0.227
SPN1	Spn1p	0.193
RPT2	Rpt2p	0.192
SPT8	Spt8p	0.185
CTR9	Ctr9p	0.173
SAS4	Sas4p	0.172
CKA1	Cka1p	0.171
RPN10	Rpn10p	0.160
BUR6	Bur6p	0.156
SRB2	Srb2p	0.143
KAP114	Kap114p	0.116
TAF2	Taf2p	0.113
RAD23	Rad23p	0.106
NGG1	Ngg1p	0.100
DST1	Dst1p	0.094
MED1	Med1p	0.093
PAF1	Paf1p	0.088
RRT5	Rrt5p	0.077
RTF1	Rtf1p	0.077
PGD1	Pgd1p	0.076
RPB11	Rpb11p	0.075
RPT5	Rpt5p	0.064
CKB1	Ckb1p	0.062
RPN9	Rpn9p	0.061
YRB2	Yrb2p	0.058
SUB1	Sub1p	0.056
RPB3	Rpb3p	0.055
CSE2	Cse2p	0.055
SRD1	Srd1p	0.054
SPT20	Spt20p	0.053
YLR264C-A	hypothetical protein	0.053
MTC1	Mtc1p	0.053
IES6	Ies6p	0.052
LEU2	Leu2p	0.048
SOH1	Soh1p	0.048
CAB3	Cab3p	0.048
TFB4	Tfb4p	0.047
ARP10	Arp10p	0.043
ARG8	Arg8p	0.043
RPN6	Rpn6p	0.042
YOL038C-A	hypothetical protein	0.041
STH1	Sth1p	0.040
MER1	Mer1p	0.040
SPT5	Spt5p	0.040
YLR162W	hypothetical protein	0.040
PDR16	Pdr16p	0.039
HDA2	Hda2p	0.038
WWM1	Wwm1p	0.037
RPN7	Rpn7p	0.037
CUP1-1	Cup1-1p	0.037
MF(ALPHA)2	Mf(alpha)2p	0.036
YPR157W	hypothetical protein	0.036
NUT1	Nut1p	0.036
CDC73	Cdc73p	0.036
TSC3	Tsc3p	0.036
HTB1	Htb1p	0.035
TAD2	Tad2p	0.035
NAB3	Nab3p	0.034
TFA2	Tfa2p	0.034
SPL2	Spl2p	0.033
YAR068W	hypothetical protein	0.033
YLR042C	hypothetical protein	0.033
HXT3	Hxt3p	0.033
YNL155W	hypothetical protein	0.032
BAT2	Bat2p	0.032
MF(ALPHA)1	Mf(alpha)1p	0.032
SCM4	Scm4p	0.032
ATP6	Atp6p	0.032
PRS2	Prs2p	0.031
SSL1	Ssl1p	0.031
URA3	Ura3p	0.031
HHT2	Hht2p	0.030
SET2	Set2p	0.030
WSS1	Wss1p	0.030
YIR035C	hypothetical protein	0.030
SRB7	Srb7p	0.029
RIF1	Rif1p	0.029
SPT7	Spt7p	0.029
SAS5	Sas5p	0.029
RTS2	Rts2p	0.028
NHP6A	Nhp6ap	0.028
SFT1	Sft1p	0.028
RPN13	Rpn13p	0.028
AUA1	Aua1p	0.028
HAT2	Hat2p	0.027
HPF1	Hpf1p	0.027
ZPS1	Zps1p	0.027
YBR013C	hypothetical protein	0.027
FMT1	Fmt1p	0.026
YOL013W-A	hypothetical protein	0.026
ADH2	Adh2p	0.026
YLR040C	hypothetical protein	0.026
IMH1	Imh1p	0.026
DIC1	Dic1p	0.025
RIB2	Rib2p	0.025
HO	Hop	0.024
BSC1	Bsc1p	0.024
REE1	Ree1p	0.024
UBC6	Ubc6p	0.024
PTR2	Ptr2p	0.024
UFO1	Ufo1p	0.024
MFA2	Mfa2p	0.024
PSH1	Psh1p	0.023
ALT2	Alt2p	0.023
BIO2	Bio2p	0.023
UPS3	Ups3p	0.023
SRO77	Sro77p	0.023
RRN5	Rrn5p	0.023
LUC7	Luc7p	0.023
YKR075C	hypothetical protein	0.023
NRG2	Nrg2p	0.023
CRP1	Crp1p	0.022
PCT1	Pct1p	0.022
EXO70	Exo70p	0.022
YPR096C	hypothetical protein	0.022
BNA4	Bna4p	0.022
GAL4	Gal4p	0.022
IZH4	Izh4p	0.022
YAL037C-A	hypothetical protein	0.022
CHA1	Cha1p	0.022
RPN8	Rpn8p	0.022
CPD1	Cpd1p	0.021
MET8	Met8p	0.021
YAL064W	hypothetical protein	0.021
SSL2	Ssl2p	0.021
YCH1	Ych1p	0.021
CUE4	Cue4p	0.021
YPL067C	hypothetical protein	0.021
ARR2	Arr2p	0.020
YJL218W	hypothetical protein	0.020
YMR317W	hypothetical protein	0.020
RNP1	Rnp1p	0.020
GLT1	Glt1p	0.020
YAR066W	hypothetical protein	0.020
RPB7	Rpb7p	0.020
YGL006W-A	hypothetical protein	0.020
IOC4	Ioc4p	0.020
SNF11	Snf11p	0.020
HOR2	Hor2p	0.020
CTS1	Cts1p	0.020
SEN54	Sen54p	0.020
YIL151C	hypothetical protein	0.020
GYL1	Gyl1p	0.020
TIM8	Tim8p	0.019
COS12	Cos12p	0.019
YDR034C-A	hypothetical protein	0.019
SLF1	Slf1p	0.019
YGR017W	hypothetical protein	0.019
DUR1,2	Dur1,2p	0.019
SPT2	Spt2p	0.019
DIF1	Dif1p	0.019
ATR1	Atr1p	0.019
BDF2	Bdf2p	0.019
YNL067W-B	hypothetical protein	0.019
NTR2	Ntr2p	0.019
YLR363W-A	hypothetical protein	0.019
YBL029W	hypothetical protein	0.019
BIT61	Bit61p	0.018
YLR126C	hypothetical protein	0.018
ENA5	Ena5p	0.018
YJL107C	hypothetical protein	0.018
LCL1	Lcl1p	0.018
SWM2	Swm2p	0.018
YJL160C	hypothetical protein	0.018
YNL018C	hypothetical protein	0.018
SNM1	Snm1p	0.018
OPT2	Opt2p	0.018
TIR3	Tir3p	0.018
YLR412C-A	hypothetical protein	0.018
SWC7	Swc7p	0.018
YKR041W	hypothetical protein	0.018
INO80	Ino80p	0.018
YJL181W	hypothetical protein	0.017
UTR4	Utr4p	0.017
SGT2	Sgt2p	0.017
YER186C	hypothetical protein	0.017
YGL235W	hypothetical protein	0.017
HSH49	Hsh49p	0.017
TIP1	Tip1p	0.017
ENT5	Ent5p	0.017
YML100W-A	hypothetical protein	0.017
YNL162W-A	hypothetical protein	0.017
HLJ1	Hlj1p	0.017
YNL033W	hypothetical protein	0.017
AQY2	Aqy2p	0.017
YER034W	hypothetical protein	0.017
RTT105	Rtt105p	0.017
RIF2	Rif2p	0.017
BIO4	Bio4p	0.017
YPL216W	hypothetical protein	0.017
YLR108C	hypothetical protein	0.017
YPR027C	hypothetical protein	0.017
BDS1	Bds1p	0.017
YML003W	hypothetical protein	0.017
FCY22	Fcy22p	0.017
YBL044W	hypothetical protein	0.017
TYE7	Tye7p	0.017
YML053C	hypothetical protein	0.017
YNR062C	hypothetical protein	0.016
YOR365C	hypothetical protein	0.016
YLR278C	hypothetical protein	0.016
KNH1	Knh1p	0.016
YNL234W	hypothetical protein	0.016
YFR035C	hypothetical protein	0.016
POP6	Pop6p	0.016
GPD2	Gpd2p	0.016
YCR102C	hypothetical protein	0.016
CAB4	Cab4p	0.016
YGR169C-A	hypothetical protein	0.016
AAD15	Aad15p	0.016
YOR060C	hypothetical protein	0.016
MFA1	Mfa1p	0.016
YHK8	Yhk8p	0.016
SET4	Set4p	0.016
TFB1	Tfb1p	0.016
HMRA1	Hmra1p	0.016
YKL063C	hypothetical protein	0.016
SEC20	Sec20p	0.016
YLR342W-A	hypothetical protein	0.016
BI4	Bi4p	0.016
YDR524W-C	hypothetical protein	0.016
PRE10	Pre10p	0.016
YOR012W	hypothetical protein	0.016
PTI1	Pti1p	0.016
SLU7	Slu7p	0.016
SCT1	Sct1p	0.016
OPY1	Opy1p	0.016
TAF1	Taf1p	0.016
CTR3	Ctr3p	0.016
RNR2	Rnr2p	0.016
YJR120W	hypothetical protein	0.016
ARO10	Aro10p	0.016
AIF1	Aif1p	0.015
ZRT1	Zrt1p	0.015
YHR162W	hypothetical protein	0.015
PHM6	Phm6p	0.015
YNR063W	hypothetical protein	0.015
CAR1	Car1p	0.015
YCL001W-B	hypothetical protein	0.015
MMP1	Mmp1p	0.015
WSC4	Wsc4p	0.015
YNL034W	hypothetical protein	0.015
DOG1	Dog1p	0.015
KSH1	Ksh1p	0.015
YOR302W	hypothetical protein	0.015
YIR042C	hypothetical protein	0.015
YER175W-A	hypothetical protein	0.015
PIR1	Pir1p	0.015
CAB2	Cab2p	0.015
RPN3	Rpn3p	0.015
YNL260C	hypothetical protein	0.015
RSC8	Rsc8p	0.015
SAM3	Sam3p	0.014
LCL2	Lcl2p	0.014
TAE2	Tae2p	0.014
SNU23	Snu23p	0.014
SGE1	Sge1p	0.014
SSP1	Ssp1p	0.014
SUT1	Sut1p	0.014
YKL106C-A	hypothetical protein	0.014
GCV1	Gcv1p	0.014
MSG5	Msg5p	0.014
YGR266W	hypothetical protein	0.014
THP3	Thp3p	0.014
DAL7	Dal7p	0.014
SAK1	Sak1p	0.014
ASF1	Asf1p	0.014
ECT1	Ect1p	0.014
YSF3	Ysf3p	0.014
SPS4	Sps4p	0.014
YRA2	Yra2p	0.014
YOR387C	hypothetical protein	0.014
YDL085C-A	hypothetical protein	0.014
YPR159C-A	hypothetical protein	0.014
SOR2	Sor2p	0.014
YNL058C	hypothetical protein	0.014
SWT21	Swt21p	0.014
FRE4	Fre4p	0.014
NUF2	Nuf2p	0.014
TCO89	Tco89p	0.014
BIO5	Bio5p	0.014
SRT1	Srt1p	0.014
ICS3	Ics3p	0.014
CAB1	Cab1p	0.014
YOR316C-A	hypothetical protein	0.013
REH1	Reh1p	0.013
YMR001C-A	hypothetical protein	0.013
GCN4	Gcn4p	0.013
PRP28	Prp28p	0.013
VBA5	Vba5p	0.013
YMR122W-A	hypothetical protein	0.013
MTR2	Mtr2p	0.013
YER064C	hypothetical protein	0.013
YLR406C-A	hypothetical protein	0.013
ISU2	Isu2p	0.013
YLR460C	hypothetical protein	0.013
PCM1	Pcm1p	0.013
YDL012C	hypothetical protein	0.013
YSR3	Ysr3p	0.013
YOL014W	hypothetical protein	0.013
YNL097C-B	hypothetical protein	0.013
YER085C	hypothetical protein	0.013
SEO1	Seo1p	0.013
ORC6	Orc6p	0.013
SPO74	Spo74p	0.013
YCR050C	hypothetical protein	0.013
SPO77	Spo77p	0.013
AAP1	Aap1p	0.013
YOL097W-A	hypothetical protein	0.013
RAM2	Ram2p	0.013
YKL068W-A	hypothetical protein	0.013
YJL213W	hypothetical protein	0.013
PHO11	Pho11p	0.013
YHR177W	hypothetical protein	0.013
TPN1	Tpn1p	0.013
SMP1	Smp1p	0.013
YDR182W-A	hypothetical protein	0.013
YNL146C-A	hypothetical protein	0.013
BRL1	Brl1p	0.012
SBH2	Sbh2p	0.012
YPR153W	hypothetical protein	0.012
YDR222W	hypothetical protein	0.012
STB1	Stb1p	0.012
YKL070W	hypothetical protein	0.012
AIM27	Aim27p	0.012
SCW4	Scw4p	0.012
SPO19	Spo19p	0.012
YHR035W	hypothetical protein	0.012
NSE4	Nse4p	0.012
YLR012C	hypothetical protein	0.012
YJL028W	hypothetical protein	0.012
GRX8	Grx8p	0.012
DSK2	Dsk2p	0.012
YBR219C	hypothetical protein	0.012
YPR108W-A	hypothetical protein	0.012
YOR268C	hypothetical protein	0.012
YOS1	Yos1p	0.012
YOL086W-A	hypothetical protein	0.012
SPC1	Spc1p	0.012
HHF2	Hhf2p	0.012
PCL9	Pcl9p	0.012
YFL051C	hypothetical protein	0.012
HMLALPHA2	Hmlalpha2p	0.012
MED11	Med11p	0.012
RHB1	Rhb1p	0.012
MIG2	Mig2p	0.012
HEM3	Hem3p	0.012
YGR126W	hypothetical protein	0.012
YER152C	hypothetical protein	0.012
YAL065C	hypothetical protein	0.012
YIL046W-A	hypothetical protein	0.012
YOR338W	hypothetical protein	0.012
ERT1	Ert1p	0.012
DJP1	Djp1p	0.012
YPR036W-A	hypothetical protein	0.012
DCG1	Dcg1p	0.012
SIN4	Sin4p	0.012
ATO3	Ato3p	0.011
YJL047C-A	hypothetical protein	0.011
NHP6B	Nhp6bp	0.011
PFS1	Pfs1p	0.011
OCA4	Oca4p	0.011
TAH11	Tah11p	0.011
ALD5	Ald5p	0.011
HSK3	Hsk3p	0.011
RSC4	Rsc4p	0.011
HUG1	Hug1p	0.011
YAR029W	hypothetical protein	0.011
YPL152W-A	hypothetical protein	0.011
YNL190W	hypothetical protein	0.011
HRB1	Hrb1p	0.011
YAL037W	hypothetical protein	0.011
SPR6	Spr6p	0.011
YNL277W-A	hypothetical protein	0.011
LYS20	Lys20p	0.011
FRE5	Fre5p	0.011
FRE7	Fre7p	0.011
TRA1	Tra1p	0.011
HPA3	Hpa3p	0.011
BAP3	Bap3p	0.011
UBC1	Ubc1p	0.011
SEM1	Sem1p	0.011
BRN1	Brn1p	0.011
YLL053C	hypothetical protein	0.011
YKL018C-A	hypothetical protein	0.011
KRE29	Kre29p	0.011
DOS2	Dos2p	0.011
DAD3	Dad3p	0.011
YGL015C	hypothetical protein	0.011
MCX1	Mcx1p	0.011
YLR307C-A	hypothetical protein	0.011
AZR1	Azr1p	0.011
CWP2	Cwp2p	0.011
MRH1	Mrh1p	0.011
YAR028W	hypothetical protein	0.011
HES1	Hes1p	0.011
MUM3	Mum3p	0.011
YIR021W-A	hypothetical protein	0.011
YJR012C	hypothetical protein	0.011
PCL1	Pcl1p	0.011
YCL021W-A	hypothetical protein	0.011
SLO1	Slo1p	0.011
YML119W	hypothetical protein	0.011
ECM2	Ecm2p	0.011
MDJ2	Mdj2p	0.011
YLR445W	hypothetical protein	0.011
APS1	Aps1p	0.011
IME4	Ime4p	0.011
YEA6	Yea6p	0.011
LRO1	Lro1p	0.011
TIR2	Tir2p	0.011
RCK1	Rck1p	0.011
CFD1	Cfd1p	0.011
YDR114C	hypothetical protein	0.011
YMR272W-B	hypothetical protein	0.011
YMR244W	hypothetical protein	0.011
YHR050W-A	hypothetical protein	0.011
YNL046W	hypothetical protein	0.011
FCY21	Fcy21p	0.010
HEM12	Hem12p	0.010
YDR348C	hypothetical protein	0.010
CUE2	Cue2p	0.010
YOR293C-A	hypothetical protein	0.010
PYC2	Pyc2p	0.010
TRI1	Tri1p	0.010
CAM1	Cam1p	0.010
FRM2	Frm2p	0.010
SAN1	San1p	0.010
PHO12	Pho12p	0.010
YCR075W-A	hypothetical protein	0.010
YIL014C-A	hypothetical protein	0.010
CMC2	Cmc2p	0.010
YOR378W	hypothetical protein	0.010
GNA1	Gna1p	0.010
SLI1	Sli1p	0.010
SMX3	Smx3p	0.010
IMA5	Ima5p	0.010
RMD6	Rmd6p	0.010
HEM1	Hem1p	0.010
YMR295C	hypothetical protein	0.010
YPR174C	hypothetical protein	0.010