IMP

Process View

Danio rerio

12 genes annotated in zebrafish

Multi-species View

ncrna metabolic process

GO:0034660

The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs).

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ncrna metabolic process"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "ncrna metabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
tbl3	transducin (beta)-like 3	0.793	Yeast
im:7148292	im:7148292	0.564
gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.520	Yeast
rpl11	ribosomal protein L11	0.448	Human
wdr36	WD repeat domain 36	0.392
rps15a	ribosomal protein S15a	0.391
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.376
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.367	Yeast
si:dkey-91i17.1	si:dkey-91i17.1	0.320
tars	threonyl-tRNA synthetase	0.315
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.313	Yeast
npm1	nucleophosmin 1	0.229
rps15	ribosomal protein S15	0.228	Human
bop1	block of proliferation 1	0.225	Human Yeast Mouse
pes	pescadillo	0.205	Human Yeast Mouse
wdr46	WD repeat domain 46	0.205
rpsa	ribosomal protein SA	0.198
ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.198
bon	bonnie and clyde	0.173
rpl5a	ribosomal protein L5a	0.171	Human
rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.164
nol10	nucleolar protein 10	0.162
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.157
wdr75	WD repeat domain 75	0.153
noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.152	Yeast
zgc:123327	zgc:123327	0.144
wdr3	WD repeat domain 3	0.139	Yeast
nudc	nuclear distribution gene C homolog	0.138
ctps	CTP synthase	0.137
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.136
zgc:109901	zgc:109901	0.123	Human
rpl7l1	ribosomal protein L7-like 1	0.122
wdr12	WD repeat domain 12	0.110	Human
hars	histidyl-tRNA synthetase	0.106
naca	nascent polypeptide-associated complex alpha polypeptide	0.103
polr1a	polymerase (RNA) I polypeptide A	0.101
mettl2a	methyltransferase like 2A	0.088	Human
noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.085	Yeast
rpl36a	ribosomal protein L36A	0.078
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.077	Yeast
eef1g	eukaryotic translation elongation factor 1 gamma	0.074
nip7	nuclear import 7 homolog (S. cerevisiae)	0.073
nup107	nucleoporin 107	0.069
rps7	ribosomal protein S7	0.066	Human
rpl5b	ribosomal protein L5b	0.066	Human
zgc:56683	zgc:56683	0.066	Yeast
metap1	methionyl aminopeptidase 1	0.065
mars	methionine-tRNA synthetase	0.064	Yeast
tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.063
rpl7	ribosomal protein L7	0.062	Human
rpl35	ribosomal protein L35	0.062
zgc:76988	zgc:76988	0.061
rpl22l1	ribosomal protein L22-like 1	0.060
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.059	Yeast
rsl24d1	ribosomal L24 domain containing 1	0.058
zgc:110388	zgc:110388	0.058
prmt3	protein arginine methyltransferase 3	0.057
zgc:92868	zgc:92868	0.057
ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.056	Yeast
zgc:65996	zgc:65996	0.055
pdcd11	programmed cell death 11	0.055	Yeast
abcf1	ATP-binding cassette, sub-family F (GCN20), member 1	0.051
ola1	Obg-like ATPase 1	0.050
fbl	fibrillarin	0.048	Yeast Mouse
zgc:77052	zgc:77052	0.047
eprs	glutamyl-prolyl-tRNA synthetase	0.046
rps18	ribosomal protein S18	0.046
extl3	exostoses (multiple)-like 3	0.045
rps10	ribosomal protein S10	0.045
rps25	ribosomal protein S25	0.045
hspa8	heat shock protein 8	0.043
dcaf13	ddb1 and cul4 associated factor 13	0.042	Yeast
rpl38	ribosomal protein L38	0.042
rps29	ribosomal protein S29	0.041
LOC100000999	60S ribosomal protein L37-like	0.041
rps12	ribosomal protein S12	0.040
yars	tyrosyl-tRNA synthetase	0.039
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.039
rars	arginyl-tRNA synthetase	0.038
drg1	developmentally regulated GTP binding protein 1	0.038
ruvbl2	RuvB-like 2 (E. coli)	0.037
riok2	RIO kinase 2 (yeast)	0.037
sart3	squamous cell carcinoma antigen recognised by T cells 3	0.037
dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37	0.036	Yeast
nolc1	nucleolar and coiled-body phosphoprotein 1	0.036
mcmbp	minichromosome maintenance complex binding protein	0.036
gtf3aa	general transcription factor IIIAa	0.035
rnasen	ribonuclease type III, nuclear	0.035	Human Worm
polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.033
uba3	ubiquitin-like modifier activating enzyme 3	0.033
csnk1a1	casein kinase 1, alpha 1	0.032	Yeast
snrpd1	small nuclear ribonucleoprotein D1 polypeptide	0.032
glrx3	glutaredoxin 3	0.032
nat10	N-acetyltransferase 10	0.032
pprc1	peroxisome proliferator-activated receptor gamma, coactivator-related 1	0.029
prmt7	protein arginine N-methyltransferase 7	0.029
zgc:109888	zgc:109888	0.028	Yeast
rps8a	ribosomal protein S8a	0.028	Yeast
rrs1	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.028
tmem93	transmembrane protein 93	0.028
rps2	ribosomal protein S2	0.028
rpl10a	ribosomal protein L10a	0.028
LOC563247	similar to ribosomal L1 domain containing 1	0.028
qtrt1	queuine tRNA-ribosyltransferase 1	0.027
rpl19	ribosomal protein L19	0.027
rps21	ribosomal protein S21	0.027
zgc:55695	zgc:55695	0.026	Human
tdrd1	tudor domain containing 1	0.025
polr2a	polymerase (RNA) II (DNA directed) polypeptide A	0.025
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.025
sdad1	SDA1 domain containing 1	0.025
trmt2a	trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.025
polr3e	polymerase (RNA) III (DNA directed) polypeptide E	0.024
plcb3	phospholipase C, beta 3 (phosphatidylinositol-specific)	0.024
psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.024
rplp0	ribosomal protein, large, P0	0.024
rps19	ribosomal protein S19	0.023
eef1b2	eukaryotic translation elongation factor 1 beta 2	0.023
psmc6	proteasome (prosome, macropain) 26S subunit, ATPase, 6	0.023
nsun5	NOP2/Sun domain family, member 5	0.023
polr1c	polymerase (RNA) I polypeptide C	0.023
nol6	nucleolar protein family 6 (RNA-associated)	0.023
etf1	eukaryotic translation termination factor 1	0.023
rps3a	ribosomal protein S3A	0.023	Yeast
ppp4ca	protein phosphatase 4 (formerly X), catalytic subunit a	0.022
zgc:92237	zgc:92237	0.022	Human Yeast Mouse
surf6	surfeit 6	0.022
grwd1	glutamate-rich WD repeat containing 1	0.022
rpl21	ribosomal protein L21	0.022
dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.022
mbnl2	muscleblind-like 2 (Drosophila)	0.022
rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.022
fancl	Fanconi anemia, complementation group L	0.022
rpl35a	ribosomal protein L35a	0.021
atad3b	ATPase family, AAA domain containing 3B	0.021
wnt3a	wingless-type MMTV integration site family, member 3A	0.021
cpsf3	cleavage and polyadenylation specific factor 3	0.021
rbbp6	retinoblastoma binding protein 6	0.021
rps26	ribosomal protein S26	0.020
zff9	zinc finger protein 9	0.020
vars	valyl-tRNA synthetase	0.020
si:ch211-1n9.7	si:ch211-1n9.7	0.020
cdc16	cell division cycle 16 homolog (S. cerevisiae)	0.020
rpl23	ribosomal protein L23	0.020
esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.019
rpl36	ribosomal protein L36	0.019
tp53	tumor protein p53	0.019
polr2eb	polymerase (RNA) II (DNA directed) polypeptide E, b	0.018
zgc:136952	zgc:136952	0.018
piwil1	piwi-like 1 (Drosophila)	0.017
mki67ip	mki67 (FHA domain) interacting nucleolar phosphoprotein (human)	0.017
wdr5	WD repeat domain 5	0.017
im:7150454	im:7150454	0.017
rps23	ribosomal protein S23	0.017
rpl6	ribosomal protein L6	0.017
wdr43	WD repeat domain 43	0.017
ppan	peter pan homolog (Drosophila)	0.017	Yeast
arpp19b	cAMP-regulated phosphoprotein 19b	0.017
gcm2	glial cells missing homolog 2 (Drosophila)	0.017
rabggtb	Rab geranylgeranyltransferase, beta subunit	0.016
rpl23a	ribosomal protein L23a	0.016
prpf8	pre-mRNA processing factor 8	0.016
rps9	ribosomal protein S9	0.016	Yeast
zgc:77235	zgc:77235	0.016
sfrs3b	splicing factor, arginine/serine-rich 3b	0.016
nsun2	NOL1/NOP2/Sun domain family, member 2	0.016
polr3b	polymerase (RNA) III (DNA directed) polypeptide B	0.016
rps5	ribosomal protein S5	0.016
ecd	ecdysoneless homolog (Drosophila)	0.016
nhp2l1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	0.015	Yeast
exosc4	exosome component 4	0.015
rad54b	RAD54 homolog B (S. cerevisiae)	0.015
gspt1l	G1 to S phase transition 1, like	0.015
ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.015
riok1	RIO kinase 1 (yeast)	0.015
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.015
wu:fa99c08	wu:fa99c08	0.015
setb	SET translocation (myeloid leukemia-associated) B	0.015
nvl	nuclear VCP-like	0.015
znf259	zinc finger protein 259	0.014
fam203a	family with sequence similarity 203, member A	0.014
orc3	origin recognition complex, subunit 3	0.014
setd8a	SET domain containing (lysine methyltransferase) 8a	0.014
aatf	apoptosis antagonizing transcription factor	0.014
rps28	ribosomal protein S28	0.014
eif4bb	eukaryotic translation initiation factor 4Bb	0.014
rpl13	ribosomal protein L13	0.014
ftsj1	FtsJ homolog 1 (E. coli)	0.014
si:dkey-74f15.3	si:dkey-74f15.3	0.014
cpsf2	cleavage and polyadenylation specific factor 2	0.014
zgc:103652	zgc:103652	0.014
rpl14	ribosomal protein L14	0.014	Human
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.014
wu:fk33d07	wu:fk33d07	0.014
abce1	ATP-binding cassette, sub-family E (OABP), member 1	0.013
lppr3b	lipid phosphate phosphatase-related protein type 3b	0.013
kars	lysyl-tRNA synthetase	0.013	Human
rbm28	RNA binding motif protein 28	0.013	Yeast
atp7a	ATPase, Cu++ transporting, alpha polypeptide	0.013
rnaset2l	ribonuclease T2, like	0.013	Zebrafish
rps24	ribosomal protein S24	0.013	Human
syncripl	synaptotagmin binding, cytoplasmic RNA interacting protein, like	0.013
faf2	Fas associated factor family member 2	0.013
sybu	syntabulin (syntaxin-interacting)	0.013
tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.013
zgc:73262	zgc:73262	0.012	Yeast
nup43	nucleoporin 43	0.012
zgc:171772	zgc:171772	0.012
eif3m	eukaryotic translation initiation factor 3, subunit M	0.012
zgc:153290	zgc:153290	0.012
cirh1a	cirrhosis, autosomal recessive 1A (cirhin)	0.012	Human Yeast
bmp7b	bone morphogenetic protein 7b	0.012
cd2bp2	CD2 antigen (cytoplasmic tail) binding protein 2	0.012
psmc3	proteasome (prosome, macropain) 26S subunit, ATPase, 3	0.012
ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.012
rrp9	ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)	0.012
zgc:163093	zgc:163093	0.012
mphosph10	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	0.012
nop56	NOP56 ribonucleoprotein homolog	0.012
rpl7a	ribosomal protein L7a	0.012	Yeast
nupl1	nucleoporin like 1	0.012
ybey	ybeY metallopeptidase	0.012
imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.012
znf622	zinc finger protein 622	0.011
nop14	NOP14 nucleolar protein homolog (yeast)	0.011
tbpl2	TATA box binding protein like 2	0.011
drg2	developmentally regulated GTP binding protein 2	0.011
psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.011
mocs3	molybdenum cofactor synthesis 3	0.011
eif2b3	eukaryotic translation initiation factor 2B, subunit 3 gamma	0.011
nanos3	nanos homolog 3	0.011
zgc:63779	zgc:63779	0.011
eftud2	elongation factor Tu GTP binding domain containing 2	0.011
pinx1	pin2/trf1-interacting protein 1	0.011
dus2l	dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)	0.011
lars	leucyl-tRNA synthetase	0.011
psma5	proteasome (prosome, macropain) subunit, alpha type,5	0.011
ublcp1	ubiquitin-like domain containing CTD phosphatase 1	0.010
zc3h13	zinc finger CCCH-type containing 13	0.010
brd2b	bromodomain containing 2b	0.010
nle1	notchless homolog 1 (Drosophila)	0.010