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Process View

Danio rerio

8 genes annotated in zebrafish

ncrna processing

Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ncrna processing"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "ncrna processing" (in gray)

Name	Description	Probability	Func Analog Organism
wdr36	WD repeat domain 36	0.635
tbl3	transducin (beta)-like 3	0.628	Yeast
utp15	utp15, U3 small nucleolar ribonucleoprotein, homolog	0.518	Yeast
im:7148292	im:7148292	0.429
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.377
nop58	NOP58 ribonucleoprotein homolog (yeast)	0.354	Yeast
rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.329
ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.232	Yeast
rps5	ribosomal protein S5	0.199
fbl	fibrillarin	0.176	Yeast
zgc:109888	zgc:109888	0.164	Yeast
rpl13	ribosomal protein L13	0.162
tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.144
polr1a	polymerase (RNA) I polypeptide A	0.135
rps15	ribosomal protein S15	0.115	Human
rps19	ribosomal protein S19	0.109
med12	mediator of RNA polymerase II transcription, subunit 12 homolog	0.101
rpl5b	ribosomal protein L5b	0.099	Human
zgc:65996	zgc:65996	0.096
gnl3l	guanine nucleotide binding protein-like 3 (nucleolar)-like	0.091	Yeast
rpl7	ribosomal protein L7	0.090	Human
surf6	surfeit 6	0.089
rpl27	ribosomal protein L27	0.084
cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.075
rps18	ribosomal protein S18	0.073
rpl5a	ribosomal protein L5a	0.073	Human
pes	pescadillo	0.072	Human Yeast Mouse
nol10	nucleolar protein 10	0.071
extl3	exostoses (multiple)-like 3	0.067
zgc:77235	zgc:77235	0.066
riok2	RIO kinase 2 (yeast)	0.065
rplp0	ribosomal protein, large, P0	0.062
pbx4	pre-B-cell leukemia transcription factor 4	0.060
rps10	ribosomal protein S10	0.060
rpl13a	ribosomal protein L13a	0.059
si:dkey-91i17.1	si:dkey-91i17.1	0.058
wdr75	WD repeat domain 75	0.057
nolc1	nucleolar and coiled-body phosphoprotein 1	0.056
bon	bonnie and clyde	0.055
etf1	eukaryotic translation termination factor 1	0.054
nat10	N-acetyltransferase 10	0.052
rps4x	ribosomal protein S4, X-linked	0.052
rps25	ribosomal protein S25	0.050
ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.050	Yeast
rpl10a	ribosomal protein L10a	0.049
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.049
gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.047	Yeast
rps21	ribosomal protein S21	0.046
nup107	nucleoporin 107	0.045
wdr46	WD repeat domain 46	0.041
rps12	ribosomal protein S12	0.041
dus2l	dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)	0.040
nol6	nucleolar protein family 6 (RNA-associated)	0.039
ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.039
nsun5	NOP2/Sun domain family, member 5	0.039
eef1b2	eukaryotic translation elongation factor 1 beta 2	0.037
npm1	nucleophosmin 1	0.037
ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.036
zgc:56683	zgc:56683	0.035	Yeast
btf3	basic transcription factor 3	0.032
wdr3	WD repeat domain 3	0.032	Yeast
ctps	CTP synthase	0.032
qtrt1	queuine tRNA-ribosyltransferase 1	0.031
rps15a	ribosomal protein S15a	0.030
prmt3	protein arginine methyltransferase 3	0.030
dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37	0.029	Yeast
drg1	developmentally regulated GTP binding protein 1	0.027
rps23	ribosomal protein S23	0.026
csnk1a1	casein kinase 1, alpha 1	0.026	Yeast
rae1	RAE1 RNA export 1 homolog (S. pombe)	0.026
zgc:114188	zgc:114188	0.025	Human
wu:fk33d07	wu:fk33d07	0.025
wdr43	WD repeat domain 43	0.025
pdcd11	programmed cell death 11	0.024	Yeast
ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.023	Yeast
rpl3	ribosomal protein L3	0.023
zgc:92872	zgc:92872	0.022
lppr3b	lipid phosphate phosphatase-related protein type 3b	0.022
sart3	squamous cell carcinoma antigen recognised by T cells 3	0.022
polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.021
rps26l	ribosomal protein S26, like	0.020
rpl11	ribosomal protein L11	0.020	Human
ruvbl2	RuvB-like 2 (E. coli)	0.020
rabggtb	Rab geranylgeranyltransferase, beta subunit	0.020
mak16	MAK16 homolog (S. cerevisiae)	0.020
rps3a	ribosomal protein S3A	0.020	Yeast
LOC100000999	60S ribosomal protein L37-like	0.020
rps29	ribosomal protein S29	0.020
nop10	NOP10 ribonucleoprotein homolog (yeast)	0.018
hars	histidyl-tRNA synthetase	0.018
rsl24d1	ribosomal L24 domain containing 1	0.018
naca	nascent polypeptide-associated complex alpha polypeptide	0.018
dcaf13	ddb1 and cul4 associated factor 13	0.017	Yeast
diexf	digestive organ expansion factor homolog	0.017
zgc:136952	zgc:136952	0.017
eif3m	eukaryotic translation initiation factor 3, subunit M	0.017
si:ch211-103i6.5	si:ch211-103i6.5	0.017
rpl14	ribosomal protein L14	0.017	Human
polr1c	polymerase (RNA) I polypeptide C	0.016
dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.016
rps7	ribosomal protein S7	0.016	Human
zgc:92237	zgc:92237	0.016	Human Yeast Mouse
polr3e	polymerase (RNA) III (DNA directed) polypeptide E	0.016
rpl36a	ribosomal protein L36A	0.016
gspt1l	G1 to S phase transition 1, like	0.016
fam203a	family with sequence similarity 203, member A	0.015
pprc1	peroxisome proliferator-activated receptor gamma, coactivator-related 1	0.015
rps3	ribosomal protein S3	0.015
nupl1	nucleoporin like 1	0.015
rpsa	ribosomal protein SA	0.015
wdr12	WD repeat domain 12	0.015	Human
im:6907928	im:6907928	0.014
faua	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a	0.014
zgc:76988	zgc:76988	0.014
tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.014
zgc:110717	zgc:110717	0.014	Yeast
esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.013
pa2g4a	proliferation-associated 2G4, a	0.013
LOC563247	similar to ribosomal L1 domain containing 1	0.013
cd2bp2	CD2 antigen (cytoplasmic tail) binding protein 2	0.013
rps26	ribosomal protein S26	0.013
mars	methionine-tRNA synthetase	0.013
prmt7	protein arginine N-methyltransferase 7	0.013
syncripl	synaptotagmin binding, cytoplasmic RNA interacting protein, like	0.013
ecd	ecdysoneless homolog (Drosophila)	0.013
zgc:63779	zgc:63779	0.013
arpp19b	cAMP-regulated phosphoprotein 19b	0.013
ccnt2b	cyclin T2b	0.013
noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.013	Yeast
rad54b	RAD54 homolog B (S. cerevisiae)	0.013
rrp9	ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)	0.012
rbm28	RNA binding motif protein 28	0.012	Yeast
bop1	block of proliferation 1	0.012	Human Yeast Mouse
rbm19	RNA binding motif protein 19	0.012	Yeast Worm
rpl7l1	ribosomal protein L7-like 1	0.012
uba3	ubiquitin-like modifier activating enzyme 3	0.012
rpl23	ribosomal protein L23	0.011
rpl35	ribosomal protein L35	0.011
si:ch211-89p1.3	si:ch211-89p1.3	0.011
dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.011
si:zfos-905g2.1	si:zfos-905g2.1	0.011
zgc:73262	zgc:73262	0.010	Yeast
mcmbp	minichromosome maintenance complex binding protein	0.010
zgc:109901	zgc:109901	0.010	Human
cirh1a	cirrhosis, autosomal recessive 1A (cirhin)	0.010	Human Yeast
vars	valyl-tRNA synthetase	0.010
mocs3	molybdenum cofactor synthesis 3	0.010