IMP

Process View

Danio rerio

9 genes annotated in zebrafish

Multi-species View

regulation of mesodermal cell fate specification

GO:0042661

Any process that modulates the frequency, rate or extent of mesoderm cell fate specification.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in zebrafish Include functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of mesodermal cell fate specification"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of mesodermal cell fate specification" (in gray)

Name	Description	Probability	Func Analog Organism
vent	ventral expressed homeobox	0.866
gli1	GLI-Kruppel family member 1	0.846
fgfr1a	fibroblast growth factor receptor 1a	0.779	Mouse
bmp4	bone morphogenetic protein 4	0.724
tbx1	T-box 1	0.709
chd	chordin	0.630
tbx16	T-box gene 16	0.563
foxi1	forkhead box I1	0.561
msxc	muscle segment homeobox C	0.463
hnf1ba	HNF1 homeobox Ba	0.461
eya1	eyes absent homolog 1	0.382
pax2a	paired box gene 2a	0.366
vox	ventral homeobox	0.345
sox10	SRY-box containing gene 10	0.321
her7	hairy and enhancer of split related-7	0.317
tbx6	T-box gene 6	0.313
bmp2b	bone morphogenetic protein 2b	0.309
met	met proto-oncogene (hepatocyte growth factor receptor)	0.258
cyp26c1	cytochrome P450, family 26, subfamily C, polypeptide 1	0.251
pcdh8	protocadherin 8	0.237
eve1	even-skipped-like1	0.236
fgf3	fibroblast growth factor 3	0.225
hoxd4a	homeo box D4a	0.224
nkd1	naked cuticle homolog 1 (Drosophila)	0.205
foxn4	forkhead box N4	0.198
flh	floating head	0.191
hmx4	H6 family homeobox 4	0.186	Worm
fgf10a	fibroblast growth factor 10a	0.181
msxe	muscle segment homeobox E	0.178
bmp7a	bone morphogenetic protein 7a	0.176
foxd5	forkhead box D5	0.174
wnt4a	wingless-type MMTV integration site family, member 4a	0.171
vsx2	visual system homeobox 2	0.170	Zebrafish
pax8	paired box gene 8	0.168
neurod4	neurogenic differentiation 4	0.165
wnt5b	wingless-type MMTV integration site family, member 5b	0.159
foxb1.2	forkhead box B1.2	0.153
dharma	dharma	0.148
cdx4	caudal type homeo box transcription factor 4	0.146
sox9b	SRY-box containing gene 9b	0.139
nkx2.2a	NK2 transcription factor related 2a	0.136
wnt9a	wingless-type MMTV integration site family, member 9A	0.120
brd4	bromodomain containing 4	0.112
irf6	interferon regulatory factor 6	0.111
mib	mind bomb	0.109
tal1	T-cell acute lymphocytic leukemia 1	0.107
hoxc6a	homeo box C6a	0.107
ved	ventrally expressed dharma/bozozok antagonist	0.104
tbx20	T-box 20	0.103
admp	anti-dorsalizing morphogenic protein	0.102
hoxb4a	homeo box B4a	0.097
hoxb2a	homeo box B2a	0.095
oep	one-eyed pinhead	0.091
tll1	tolloid-like 1	0.090
evx1	even-skipped homeobox 1	0.090	Zebrafish
wnt8b	wingless-type MMTV integration site family, member 8b	0.086
hoxa2b	homeo box A2b	0.085
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.085
dab1a	disabled homolog 1a (Drosophila)	0.081
spry2	sprouty homolog 2	0.080
efnb3b	ephrin B3b	0.077
ascl1a	achaete-scute complex-like 1a (Drosophila)	0.074
hoxb8a	homeo box B8a	0.074
prickle1a	prickle-like 1 (Drosophila) a	0.073
tbx2b	T-box 2b	0.072
sox2	SRY-box containing gene 2	0.070
shha	sonic hedgehog a	0.068
dlc	deltaC	0.068
lef1	lymphocyte enhancer binding factor 1	0.066
vsx1	visual system homeobox 1 homolog, chx10-like	0.062
wnt1	wingless-type MMTV integration site family, member 1	0.060
dkk1b	dickkopf 1b	0.059
wnt11	wingless-type MMTV integration site family, member 11	0.055
nrarpb	notch-regulated ankyrin repeat protein b	0.055
hoxc4a	homeo box C4a	0.053
tbx5a	T-box 5a	0.051
six1b	sine oculis homeobox homolog 1b	0.050
wif1	wnt inhibitory factor 1	0.049
gata2a	GATA-binding protein 2a	0.046
hoxb5b	homeo box B5b	0.046
sp7	Sp7 transcription factor	0.046
sall4	sal-like 4 (Drosophila)	0.046
her1	hairy-related 1	0.046
tbx18	T-box 18	0.045
gdf6b	growth differentiation factor 6b	0.042
sox32	SRY-box containing gene 32	0.041	Mouse
vax2	ventral anterior homeobox 2	0.041
spns2	spinster homolog 2 (Drosophila)	0.040
hoxc8a	homeo box C8a	0.040
traf4a	tnf receptor-associated factor 4a	0.040
atoh1a	atonal homolog 1a	0.040
smo	smoothened homolog (Drosophila)	0.040
runx2b	runt-related transcription factor 2b	0.040
epha7	eph receptor A7	0.040
rx2	retinal homeobox gene 2	0.039
dusp6	dual specificity phosphatase 6	0.039
dlx3b	distal-less homeobox gene 3b	0.039
notch3	notch homolog 3	0.039	Zebrafish
col8a1a	collagen, type VIII, alpha 1a	0.039
prox1	prospero-related homeobox gene 1	0.038
ndr1	nodal-related 1	0.038
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.038
bmp2a	bone morphogenetic protein 2a	0.038
cdh2	cadherin 2, neuronal	0.037
alcama	activated leukocyte cell adhesion molecule a	0.037
notch1b	notch homolog 1b	0.037	Zebrafish
tbx24	T-box 24	0.037
jag1b	jagged 1b	0.036
fgf8a	fibroblast growth factor 8 a	0.035
dld	deltaD	0.035
sim1a	single-minded homolog 1a (Drosophila)	0.035
nog2	noggin 2	0.034
hoxa11a	homeo box A11a	0.034
meis2.2	myeloid ecotropic viral integration site 2.2	0.034
sox4b	SRY-box containing gene 4b	0.034
hoxb6a	homeo box B6a	0.033
efna5a	ephrin A5a	0.033
dla	deltaA	0.032
pax6b	paired box gene 6b	0.032
sfrp1a	secreted frizzled-related protein 1a	0.032
her5	hairy-related 5	0.032
tcf7l1a	transcription factor 7-like 1a (T-cell specific, HMG-box)	0.031
gata3	GATA-binding protein 3	0.031
tjp1	tight junction protein 1 (zona occludens 1)	0.031
ascl1b	achaete-scute complex-like 1b (Drosophila)	0.030
alas2	aminolevulinate, delta-, synthetase 2	0.030
notch1a	notch homolog 1a	0.030
sox1a	SRY-box containing gene 1a	0.029
LOC100000500	sclerostin-like	0.029
ndr2	nodal-related 2	0.029
six4b	sine oculis homeobox homolog 4b	0.029
sema3aa	semaphorin 3aa	0.029
mespb	mesoderm posterior b	0.029	Mouse
has2	hyaluronan synthase 2	0.029
ptch1	patched 1	0.028
pitx3	paired-like homeodomain transcription factor 3	0.028
mab21l2	mab-21-like 2	0.027
hbbe3	hemoglobin beta embryonic-3	0.027
ephb4a	eph receptor B4a	0.027
chrna2a	cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)	0.026
dlx2a	distal-less homeobox gene 2a	0.026
neurod	neurogenic differentiation	0.026
vangl2	vang-like 2 (van gogh, Drosophila)	0.026
twist1a	twist1a	0.025
ephb4b	eph receptor B4b	0.025
plcg1	phospholipase C, gamma 1	0.025
notum3	notum 3	0.025
hoxb5a	homeo box B5a	0.024
lft2	lefty2	0.024
epha4b	eph receptor A4b	0.023
snai1b	snail homolog 1b (Drosophila)	0.023
gfra1b	gdnf family receptor alpha 1b	0.022
pou5f1	POU domain, class 5, transcription factor 1	0.022
gdnf	glial cell derived neurotrophic factor	0.021
hmx2	H6 family homeobox 2	0.021
fli1a	friend leukemia integration 1a	0.021
spaw	southpaw	0.021
ryk	receptor-like tyrosine kinase	0.021
rx1	retinal homeobox gene 1	0.019
atoh7	atonal homolog 7	0.019
tfap2c	transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)	0.019
hey1	hairy/enhancer-of-split related with YRPW motif 1	0.019
foxh1	forkhead box H1	0.019
wnt9b	wingless-type MMTV integration site family, member 9B	0.018
epb41	erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.018
lmx1b.2	LIM homeobox transcription factor 1, beta 2	0.018
fgf8b	fibroblast growth factor 8 b	0.018
foxg1a	forkhead box G1a	0.018
msgn1	mesogenin 1	0.018
nkx3.2	NK3 homeobox 2	0.018
sp5l	Sp5 transcription factor-like	0.018
tnfrsfa	tumor necrosis factor receptor superfamily, member a	0.017
mespa	mesoderm posterior a	0.017	Mouse
krt4	keratin 4	0.017
hoxa4a	homeo box A4a	0.017
jag2	jagged 2	0.017
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.017
frem3	Fras1 related extracellular matrix 3	0.017
hmx3	homeo box (H6 family) 3	0.017	Worm
grem2	gremlin 2, cysteine knot superfamily	0.017
hoxd10a	homeo box D10a	0.017
pnx	posterior neuron-specific homeobox	0.017
vgll4l	vestigial like 4 like	0.017
hoxa9a	homeo box A9a	0.016
efnb2a	ephrin B2a	0.016
gro2	groucho 2	0.016
slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	0.016
kal1a	Kallmann syndrome 1a sequence	0.016
boc	brother of CDO	0.015
LOC100536023	hypothetical protein LOC100536023	0.015
isl2a	islet2a	0.015
lmo4a	LIM domain only 4a	0.015
lhx1b	LIM homeobox 1b	0.015
cxcr4b	chemokine (C-X-C motif), receptor 4b	0.015
hoxb1b	homeo box B1b	0.015
vcana	versican a	0.015
lhx1a	LIM homeobox 1a	0.015
gsc	goosecoid	0.014
pou2f1a	POU class 2 homeobox 1a	0.014
sparc	secreted acidic cysteine rich glycoprotein	0.014
sox3	SRY-box containing gene 3	0.014
snai1a	snail homolog 1a (Drosophila)	0.014
hoxa3a	homeo box A3a	0.014	Zebrafish
nkx2.1a	NK2 homeobox 1a	0.014
hoxc1a	homeo box C1a	0.014
cdx1a	caudal type homeo box transcription factor 1 a	0.013
pou3f3a	POU class 3 homeobox 3a	0.013
ahi1	Abelson helper integration site 1	0.013
hoxd3a	homeo box D3a	0.013	Zebrafish
tp63	tumor protein p63	0.013
rhoub	ras homolog gene family, member Ub	0.013
her3	hairy-related 3	0.013
gbx2	gastrulation brain homeo box 2	0.013
foxa3	forkhead box A3	0.013
zgc:153239	zgc:153239	0.013
ext1a	exostoses (multiple) 1a	0.013
dhrs3a	dehydrogenase/reductase (SDR family) member 3a	0.012
lhx3	LIM homeobox 3	0.012
lhx5	LIM homeobox 5	0.011
sox17	SRY-box containing gene 17	0.011	Mouse
otx1a	orthodenticle homolog 1a	0.011
gpr126	G protein-coupled receptor 126	0.011
lft1	lefty1	0.011
her6	hairy-related 6	0.011
hand2	heart and neural crest derivatives expressed transcript 2	0.011
atp1b1a	ATPase, Na+/K+ transporting, beta 1a polypeptide	0.011
dmrt3a	doublesex and mab-3 related transcription factor 3a	0.011
wt1a	wilms tumor 1a	0.011
six4a	sine oculis homeobox homolog 4a	0.011
onecutl	one cut domain, family member, like	0.011
mll	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)	0.011
mxtx1	mix-type homeobox gene 1	0.010
spry1	sprouty homolog 1 (Drosophila)	0.010
gata1a	GATA binding protein 1a	0.010
neurog1	neurogenin 1	0.010
rad21	RAD21 homolog (S. pombe)	0.010
dlx4b	distal-less homeobox gene 4b	0.010
aldh1a2	aldehyde dehydrogenase 1 family, member A2	0.010
gli2b	GLI-Kruppel family member GLI2b	0.010