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Danio rerio

15 genes annotated in zebrafish

nucleobase containing compound catabolic process

The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "nucleobase containing compound catabolic process"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "nucleobase containing compound catabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
ef1a	elongation factor 1-alpha	0.192	Worm
atp1b1b	ATPase, Na+/K+ transporting, beta 1b polypeptide	0.135
sumo3a	SMT3 suppressor of mif two 3 homolog 3a	0.068
LOC570775	protein argonaute-1-like	0.060
cacnb1	calcium channel, voltage-dependent, beta 1 subunit	0.058
eomesa	eomesodermin homolog a	0.058
pak2a	p21 (CDKN1A)-activated kinase 2a	0.051
bida	BH3 interacting domain death agonist	0.051
fancl	Fanconi anemia, complementation group L	0.046
bactin2	bactin2	0.046
plxnb2a	plexin b2a	0.042	Mouse
arpc5a	actin related protein 2/3 complex, subunit 5A	0.042
gna13b	guanine nucleotide binding protein (G protein), alpha 13b	0.041
ryr3	ryanodine receptor 3	0.037
adcyap1b	adenylate cyclase activating polypeptide 1b	0.036
msh2	mutS homolog 2 (E. coli)	0.035	Human Yeast Mouse
hspa4a	heat shock protein 4a	0.034	Yeast
ndufs4	NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)	0.033
mcm6	MCM6 minichromosome maintenance deficient 6, mitotin (S. cerevisiae)	0.033	Human
aaas	achalasia, adrenocortical insufficiency, alacrimia	0.032
sass6	spindle assembly 6 homolog (C. elegans)	0.032
gna14	guanine nucleotide binding protein (G protein), alpha 14	0.032
nf1a	neurofibromin 1a	0.031	Mouse Rat Fly
tnni2a.4	troponin I, skeletal, fast 2a.4	0.029
tm9sf4	transmembrane 9 superfamily protein member 4	0.029
eif2c4	eukaryotic translation initiation factor 2C, 4	0.028
snx6	sorting nexin 6	0.028
tgfb3	transforming growth factor, beta 3	0.028
atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.027
smg5	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.027
sdad1	SDA1 domain containing 1	0.026
myhz1.2	myosin, heavy polypeptide 1.2, skeletal muscle	0.026
atp1a1a.4	ATPase, Na+/K+ transporting, alpha 1a.4 polypeptide	0.026	Human Zebrafish Mouse Rat Worm Fly
prim1	primase polypeptide 1	0.025
zgc:65894	zgc:65894	0.025
hsp90a.2	heat shock protein 90-alpha 2	0.025	Human Worm
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.024
cdc42ep1	CDC42 effector protein (Rho GTPase binding) 1	0.024
pparg	peroxisome proliferator activated receptor gamma	0.024
cct7	chaperonin containing TCP1, subunit 7 (eta)	0.024
srm	spermidine synthase	0.023
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.023
nme2b.2	non-metastatic cells 2b.2, protein (NM23B) expressed in	0.023
bactin1	bactin1	0.023
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.023
arf5	ADP-ribosylation factor 5	0.022
tmem93	transmembrane protein 93	0.022
tnnt3b	troponin T3b, skeletal, fast	0.022	Human
srpr	signal recognition particle receptor (docking protein)	0.021
s100v2	S100 calcium binding protein V2	0.021
pvalb4	parvalbumin 4	0.021
ache	acetylcholinesterase	0.021
eif4e	eukaryotic translation initiation factor 4e	0.021
ung	uracil-DNA glycosylase	0.020
paxip1	PAX interacting (with transcription-activation domain) protein 1	0.019
znf711	zinc finger protein 711	0.019
zgc:77052	zgc:77052	0.019
LOC100003514	protein kinase C alpha type-like	0.019
dag1	dystroglycan 1	0.019
h2afvl	H2A histone family, member V, like	0.019
rbmx	RNA binding motif protein, X-linked	0.019
ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.019
h3f3c	H3 histone, family 3C	0.019
ilk	integrin linked kinase	0.019
znf259	zinc finger protein 259	0.019	Human
cand1	cullin-associated and neddylation-dissociated 1	0.018
eif3s10	eukaryotic translation initiation factor 3, subunit 10 (theta)	0.018
disc1	disrupted in schizophrenia 1	0.018
wu:fb71f10	wu:fb71f10	0.018
pola2	polymerase (DNA directed), alpha 2	0.018
dhfr	dihydrofolate reductase	0.018
ddx39aa	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa	0.018	Yeast
dlg1	discs, large (Drosophila) homolog 1	0.018
pgam2	phosphoglycerate mutase 2 (muscle)	0.018
nedd8	neural precursor cell expressed, developmentally down-regulated 8	0.018
ybx1	Y box binding protein 1	0.018
cdc7	cell division cycle 7 homolog (S. cerevisiae)	0.018
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.017
wnt5a	wingless-type MMTV integration site family, member 5a	0.017
nrarpb	notch-regulated ankyrin repeat protein b	0.017
eef2b	eukaryotic translation elongation factor 2b	0.017	Yeast Mouse
pvrl1b	poliovirus receptor-related 1b	0.017
flr	fleer	0.016
rbl1	retinoblastoma-like 1 (p107)	0.016
pole2	polymerase (DNA directed), epsilon 2	0.016
cdk7	cyclin-dependent kinase 7	0.016	Human
bcl2	B-cell leukemia/lymphoma 2	0.016	Worm
tnnc1b	troponin C type 1b (slow)	0.016
gsna	gelsolin a	0.016
atp1b3b	ATPase, Na+/K+ transporting, beta 3b polypeptide	0.016	Human
eif3d	eukaryotic translation initiation factor 3, subunit D	0.016
zgc:73142	zgc:73142	0.016
atp1a3b	ATPase, Na+/K+ transporting, alpha 3b polypeptide	0.016	Zebrafish Worm Fly
atp1a1a.2	ATPase, Na+/K+ transporting, alpha 1a.2 polypeptide	0.016	Human Zebrafish Mouse Rat Worm Fly
jun	jun proto-oncogene	0.016	Human
zgc:100817	zgc:100817	0.016
fhla	four and a half LIM domains a	0.016
gnat2	guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2	0.016	Mouse
ddx19	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	0.015	Yeast
emx2	empty spiracles homeobox 2	0.015
tm9sf2	transmembrane 9 superfamily member 2	0.015
mif	macrophage migration inhibitory factor	0.015
slc38a2	solute carrier family 38, member 2	0.015
upf2	UPF2 regulator of nonsense transcripts homolog (yeast)	0.015
uap1l1	UDP-N-acteylglucosamine pyrophosphorylase 1, like 1	0.015
tpm1	tropomyosin 1 (alpha)	0.015
sdf2	stromal cell-derived factor 2	0.015
utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.015
etf1	eukaryotic translation termination factor 1	0.015
rac1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.015
slc25a25a	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a	0.015
tfec	transcription factor EC	0.014
nploc4	nuclear protein localization 4 homolog (S. cerevisiae)	0.014
zgc:56085	zgc:56085	0.014
mybl2	myeloblastosis oncogene-like 2	0.014
psma1	proteasome (prosome, macropain) subunit, alpha type, 1	0.014
tnnt2a	troponin T2a, cardiac	0.014
zgc:109901	zgc:109901	0.014
tpm4	tropomyosin 4	0.014
bcl2l10	BCL2-like 10 (apoptosis facilitator)	0.014
sox11b	SRY-box containing gene 11b	0.014
zgc:65979	zgc:65979	0.014
lrrn1	leucine rich repeat neuronal 1	0.014
epb41l5	erythrocyte membrane protein band 4.1 like 5	0.014
lmx1b.1	LIM homeobox transcription factor 1, beta 1	0.014
odc1	ornithine decarboxylase 1	0.014
api5	apoptosis inhibitor 5	0.014
cct8	chaperonin containing TCP1, subunit 8 (theta)	0.014
casz1	castor zinc finger 1	0.014
rtn1a	reticulon 1a	0.014
elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.014
scinlb	scinderin like b	0.014
atf4b2	activating transcription factor 4b2	0.014
npepl1	aminopeptidase-like 1	0.014
rpl3	ribosomal protein L3	0.013
strap	serine/threonine kinase receptor associated protein	0.013
zgc:91910	zgc:91910	0.013
zgc:55259	zgc:55259	0.013
elovl1b	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1b	0.013
psen1	presenilin 1	0.013
ldhd	lactate dehydrogenase D	0.013
bms1l	BMS1-like, ribosome assembly protein (yeast)	0.013
setd8a	SET domain containing (lysine methyltransferase) 8a	0.013
krt18	keratin 18	0.013
mre11a	meiotic recombination 11 homolog A (S. cerevisiae)	0.013	Human
atp1b1a	ATPase, Na+/K+ transporting, beta 1a polypeptide	0.013	Human Mouse
esco2	establishment of cohesion 1 homolog 2	0.013
sncb	synuclein, beta	0.013
atp1b2a	ATPase, Na+/K+ transporting, beta 2a polypeptide	0.013
zgc:154089	zgc:154089	0.013
rpl13a	ribosomal protein L13a	0.013
prp19	PRP19/PSO4 homolog (S. cerevisiae)	0.013
chek1	CHK1 checkpoint homolog (S. pombe)	0.013
atp6v1h	ATPase, H+ transporting, lysosomal, V1 subunit H	0.013
ssrp1a	structure specific recognition protein 1a	0.013
LOC100535549	cytoplasmic polyadenylation element-binding protein 4-like	0.013
si:ch211-254d18.3	si:ch211-254d18.3	0.013	Yeast
mcl1a	myeloid cell leukemia sequence 1a	0.012	Worm
spsb1	splA/ryanodine receptor domain and SOCS box containing 1	0.012
hmgb2b	high-mobility group box 2b	0.012
tnni1al	troponin I, skeletal, slow like	0.012
polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.012
ptpn11a	protein tyrosine phosphatase, non-receptor type 11, a	0.012
ndufs2	NADH dehydrogenase (ubiquinone) Fe-S protein 2	0.012
ahsa1l	AHA1, activator of heat shock protein ATPase homolog 1, like	0.012	Human
mycbp2	MYC binding protein 2	0.012
ccdc47	coiled-coil domain containing 47	0.012
ppargc1al	peroxisome proliferator-activated receptor gamma, coactivator 1 alpha like	0.012
ube2g2	ubiquitin-conjugating enzyme E2G 2	0.012
slc25a4	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4	0.012
im:7148292	im:7148292	0.012
tnnt3a	troponin T3a, skeletal, fast	0.012	Human
olfm2	olfactomedin 2	0.012
msna	moesin a	0.012
ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.012
ppp4ca	protein phosphatase 4 (formerly X), catalytic subunit a	0.012
copeb	core promoter element binding protein	0.012
eif3ha	eukaryotic translation initiation factor 3, subunit H, a	0.012
nola1	nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)	0.012
cftr	cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7)	0.012
anxa2a	annexin A2a	0.012
iqgap1	IQ motif containing GTPase activating protein 1	0.012
mms22l	MMS22-like, DNA repair protein	0.011
zgc:86759	zgc:86759	0.011
grhl2b	grainyhead-like 2b (Drosophila)	0.011
adrb2a	adrenergic receptor, beta 2a	0.011
tmem59l	transmembrane protein 59-like and transmembrane protein 59-like	0.011
hmgcs1	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)	0.011
txnrd1	thioredoxin reductase 1	0.011
dut	dUTP pyrophosphatase	0.011
s1pr1	sphingosine-1-phosphate receptor 1	0.011	Rat
rtcd1	RNA terminal phosphate cyclase domain 1	0.011
rad54l	RAD54-like (S. cerevisiae)	0.011
rab1a	RAB1A, member RAS oncogene family	0.011	Human
smg6	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.011
rltpr	RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing	0.011
brip1	BRCA1 interacting protein C-terminal helicase 1	0.011
psme3	proteasome activator subunit 3	0.011
rbm4.1	RNA binding motif protein 4.1	0.011
atp1a2a	ATPase, Na+/K+ transporting, alpha 2a polypeptide	0.011	Zebrafish Mouse Rat Worm Fly
lrp2	low density lipoprotein-related protein 2	0.011
zgc:101661	zgc:101661	0.011
tgfbr2	transforming growth factor, beta receptor II	0.011
snx12	sorting nexin 12	0.011
popdc2	popeye domain containing 2	0.011
esyt3	extended synaptotagmin-like protein 3	0.011
zgc:77517	zgc:77517	0.011
stmn1b	stathmin 1b	0.011
LOC100151157	similar to bin3, bicoid-interacting 3	0.011
zgc:64161	zgc:64161	0.011
tnfsf10l2	tumor necrosis factor (ligand) superfamily, member 10 like 2	0.011
zgc:111944	zgc:111944	0.011
hsd17b2	hydroxysteroid (17-beta) dehydrogenase 2	0.011
c20orf20	c20orf20 homolog (H. sapiens)	0.011
hormad1	HORMA domain containing 1	0.010
ahctf1	AT hook containing transcription factor 1	0.010
hn1l	hematological and neurological expressed 1-like	0.010
zgc:55468	zgc:55468	0.010
wu:fl55e11	wu:fl55e11	0.010
hsp70l	heat shock cognate 70-kd protein, like	0.010
usp5	ubiquitin specific protease 5	0.010
mtdha	metadherin a	0.010
smg7	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.010
pax7b	paired box gene 7b	0.010
uqcrc2a	ubiquinol-cytochrome c reductase core protein IIa	0.010
im:7141335	im:7141335	0.010
maff	v-maf musculoaponeurotic fibrosarcoma oncogene homolog f (avian)	0.010
si:dkeyp-22b2.3	si:dkeyp-22b2.3	0.010
mus81	MUS81 endonuclease homolog (yeast)	0.010
pob	partial optokinetic response b	0.010
g3bp1	GTPase activating protein (SH3 domain) binding protein 1	0.010
rcc2	regulator of chromosome condensation 2	0.010
myhz2	myosin, heavy polypeptide 2, fast muscle specific	0.010	Fly
eif3ea	eukaryotic translation initiation factor 3, subunit E, a	0.010