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Danio rerio

21 genes annotated in zebrafish

glycoprotein biosynthetic process

The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "glycoprotein biosynthetic process"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "glycoprotein biosynthetic process" (in gray)

Name	Description	Probability	Func Analog Organism
pomt1	protein-O-mannosyltransferase 1	0.966
uxs1	UDP-glucuronic acid decarboxylase 1	0.864
xylt1	xylosyltransferase 1	0.860
sox21a	SRY-box containing gene 21a	0.855
fktn	fukutin	0.779
csnk1a1	casein kinase 1, alpha 1	0.630
extl3	exostoses (multiple)-like 3	0.562
zgc:158603	zgc:158603	0.551
pomt2	protein-O-mannosyltransferase 2	0.535
large	like-glycosyltransferase	0.478
ctnnb1	catenin (cadherin-associated protein), beta 1	0.432	Human
sec23a	Sec23 homolog A (S. cerevisiae)	0.376
sec24d	SEC24 family, member D (S. cerevisiae)	0.360
hs6st1a	heparan sulfate 6-O-sulfotransferase 1a	0.320	Mouse Worm
wnt3	wingless-type MMTV integration site family, member 3	0.289
copa	coatomer protein complex, subunit alpha	0.285
hs6st2	heparan sulfate 6-O-sulfotransferase 2	0.220	Mouse Worm
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.219
epha4a	eph receptor A4a	0.209
grem1a	gremlin 1 homolog a, cysteine knot superfamily (Xenopus laevis)	0.175
gyltl1b	glycosyltransferase-like 1b	0.146
plcb3	phospholipase C, beta 3 (phosphatidylinositol-specific)	0.143
slc35b2	solute carrier family 35, member B2	0.114
copb2	coatomer protein complex, subunit beta 2	0.112
slc39a7	solute carrier family 39 (zinc transporter), member 7	0.099
rerea	arginine-glutamic acid dipeptide (RE) repeats a	0.097
scube2	signal peptide, CUB domain, EGF-like 2	0.096
rpn2	ribophorin II	0.087
evla	Enah/Vasp-like a	0.084
gle1	GLE1 RNA export mediator homolog (yeast)	0.080
fam20b	family with sequence similarity 20, member B (H. sapiens)	0.078
hs6st1b	heparan sulfate 6-O-sulfotransferase 1b	0.075	Mouse Worm
ptn	pleiotrophin	0.065
mapk6	mitogen-activated protein kinase 6	0.064
dag1	dystroglycan 1	0.063
abcc5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	0.061
hs6st3	heparan sulfate 6-O-sulfotransferase 3	0.059	Worm
snd1	staphylococcal nuclease domain containing 1	0.055
tcf7	transcription factor 7 (T-cell specific, HMG-box)	0.053
mapk14a	mitogen-activated protein kinase 14a	0.053
efnb2a	ephrin B2a	0.052
llgl2	lethal giant larvae homolog 2 (Drosophila)	0.052
b3gat3	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) and beta3-glucuronyltransferase	0.051
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.051
rfx2	regulatory factor X, 2 (influences HLA class II expression)	0.051
psmd12	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.050
ext2	exostoses (multiple) 2	0.048
csgalnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	0.048
stk10	serine/threonine kinase 10	0.048
spry2	sprouty homolog 2	0.047
uap1	UDP-N-acteylglucosamine pyrophosphorylase 1	0.047
sec13	SEC13 homolog (S. cerevisiae)	0.046
mbtps1	membrane-bound transcription factor protease, site 1	0.046
kirrel3l	kin of IRRE like 3 like	0.045
copb1	coatomer protein complex, subunit beta 1	0.042
mfn2	mitofusin 2	0.041
tfr1a	transferrin receptor 1a	0.041
plod1a	procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1a	0.040	Worm
enpp1	ectonucleotide pyrophosphatase/phosphodiesterase 1	0.039
mapk15	mitogen-activated protein kinase 15	0.038
amotl2a	angiomotin like 2a	0.038
chd7	chromodomain helicase DNA binding protein 7	0.037
fkrp	fukutin related protein	0.037
ephb4b	eph receptor B4b	0.036
ogt.2	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2	0.036
comta	catechol-O-methyltransferase a	0.035
hoxb1a	homeo box B1a	0.035
grifin	galectin related inter-fiber protein	0.034
pigu	phosphatidylinositol glycan anchor biosynthesis, class U	0.034
gbgt1l4	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4	0.034
ihha	Indian hedgehog homolog a	0.034
il7r	interleukin 7 receptor	0.034
hs3st1l1	heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1	0.033
zgc:55813	zgc:55813	0.033
wnt7ba	wingless-type MMTV integration site family, member 7Ba	0.033
ctsl1b	cathepsin L, 1 b	0.033
csad	cysteine sulfinic acid decarboxylase	0.032
fgfr3	fibroblast growth factor receptor 3	0.031
appl1	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	0.031
plod2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.031	Worm
tmed10	transmembrane emp24-like trafficking protein 10 (yeast)	0.031
zgc:92139	zgc:92139	0.031
kdelr2l	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2, like	0.030
gmds	GDP-mannose 4,6-dehydratase	0.030
ddost	dolichyl-diphosphooligosaccharide-protein glycosyltransferase	0.029	Yeast
rpz	rapunzel	0.028
si:ch211-152c2.3	si:ch211-152c2.3	0.028
zgc:103652	zgc:103652	0.027
rock2b	rho-associated, coiled-coil containing protein kinase 2b	0.027
alg5	asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)	0.026
hs2st1a	heparan sulfate 2-O-sulfotransferase 1a	0.026	Mouse Worm
siah2l	seven in absentia homolog 2 (Drosophila)-like	0.026
col7a1l	collagen type VII alpha 1-like	0.026
pdia5	protein disulfide isomerase family A, member 5	0.026
pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	0.026	Mouse
LOC562592	endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like	0.026
rpn1	ribophorin I	0.025	Human
pelo	pelota homolog (Drosophila)	0.025
dab1a	disabled homolog 1a (Drosophila)	0.025
pitrm1	pitrilysin metalloproteinase 1	0.025
dbt	dihydrolipoamide branched chain transacylase E2	0.025
vtg6	vitellogenin 6	0.025
lzts2a	leucine zipper, putative tumor suppressor 2a	0.024
mapk7	mitogen-activated protein kinase 7	0.024
ntn2	netrin 2	0.024
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.024
sufu	suppressor of fused homolog (Drosophila)	0.023
trim13	tripartite motif-containing 13	0.023
arnt2	aryl hydrocarbon receptor nuclear translocator 2	0.023
baiap2l1a	BAI1-associated protein 2-like 1a	0.023
zgc:92203	zgc:92203	0.023
itm1	integral membrane protein 1	0.023	Human
qk	quaking	0.023
si:ch1073-351m12.1	si:ch1073-351m12.1	0.022
znf536	zinc finger protein 536	0.022
atp7a	ATPase, Cu++ transporting, alpha polypeptide	0.021	Mouse
LOC100332039	ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like	0.021
rabgef1	RAB guanine nucleotide exchange factor (GEF) 1	0.021
ptk2.1	protein tyrosine kinase 2a	0.021
musk	muscle, skeletal, receptor tyrosine kinase	0.021
copg2	coatomer protein complex, subunit gamma 2	0.020
nnt	nicotinamide nucleotide transhydrogenase	0.020
LOC100000687	signal peptide, CUB and EGF-like domain-containing protein 3-like	0.020
ndst2a	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a	0.020
utrn	utrophin	0.020
ssr2	signal sequence receptor, beta	0.020
plaa	phospholipase A2-activating protein	0.020
wars	tryptophanyl-tRNA synthetase	0.020
st8sia5	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	0.020
tmed9	transmembrane emp24 protein transport domain containing 9	0.020
disp1	dispatched homolog 1 (Drosophila)	0.020
jag1b	jagged 1b	0.019
dtng	dystrobrevin, gamma and dystrobrevin, gamma-like	0.019
spast	spastin	0.019
lhx2b	LIM homeobox 2b	0.019
s100a10b	S100 calcium binding protein A10b	0.019
carm1	coactivator-associated arginine methyltransferase 1	0.019
psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.019
pld1a	phospholipase D1a	0.018
LOC793701	growth arrest-specific protein 7-like	0.018
mxi1	max interacting protein	0.018
waslb	Wiskott-Aldrich syndrome-like b	0.018
ugdh	UDP-glucose dehydrogenase	0.018
zgc:171495	zgc:171495	0.018
si:dkey-236e20.2	si:dkey-236e20.2	0.018
pppde1	PPPDE peptidase domain containing 1	0.018
ywhabb	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide b	0.017
hlxb9lb	homeo box HB9 like b	0.017
zgc:92481	zgc:92481	0.017
irf6	interferon regulatory factor 6	0.017
eif4ebp2	eukaryotic translation initiation factor 4E binding protein 2	0.017
slc39a3	solute carrier family 39 (zinc transporter), member 3	0.017
zgc:112032	zgc:112032	0.017
serinc2	serine incorporator 2	0.017
sox21b	SRY-box containing gene 21 b	0.016
LOC555739	serine/threonine-protein kinase LMTK1-like	0.016
hm13	histocompatibility (minor) 13	0.016
hectd3	HECT domain containing 3	0.016
rcn1	reticulocalbin 1, EF-hand calcium binding domain	0.016
ccr6a	chemokine (C-C motif) receptor 6a	0.016
ckap5	cytoskeleton associated protein 5	0.016
fzd5	frizzled homolog 5	0.016
b4galt1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	0.016
aplnra	apelin receptor a	0.016
cdh7	cadherin 7, type 2	0.015
hbs1l	HBS1-like (S. cerevisiae)	0.015
si:xx-bac7cse.2	si:xx-bac7cse.2	0.015
fuca1	fucosidase, alpha-L- 1, tissue	0.015
cldn8	claudin 8	0.015
LOC555279	hypothetical LOC555279	0.015
camk2d1	calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1	0.015
plagx	pleiomorphic adenoma gene X	0.015
usp9	ubiquitin specific peptidase 9	0.015
furina	furin (paired basic amino acid cleaving enzyme) a	0.015
fkbp2	FK506 binding protein 2	0.014
fzd8b	frizzled homolog 8b	0.014
yars	tyrosyl-tRNA synthetase	0.014
stac3	SH3 and cysteine rich domain 3	0.014
zgc:77126	zgc:77126	0.014
ripk2	receptor-interacting serine-threonine kinase 2	0.014
hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase	0.014
fut10	fucosyltransferase 10	0.014
si:dkey-205h13.2	si:dkey-205h13.2	0.014
gmppab	GDP-mannose pyrophosphorylase Ab	0.014
pycard	PYD and CARD domain containing	0.014
mgll	monoglyceride lipase	0.014
fa2h	fatty acid 2-hydroxylase	0.014
hs3st3b1a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1a	0.014
tmed2	transmembrane emp24 domain trafficking protein 2	0.014
smarcal1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.014
rplp1	ribosomal protein, large, P1	0.014
csrnp1a	cysteine-serine-rich nuclear protein 1a	0.014
fbn2b	fibrillin 2b	0.014
si:ch211-184m19.1	si:ch211-184m19.1	0.014
wnt3a	wingless-type MMTV integration site family, member 3A	0.014
cd9b	CD9 antigen, b	0.014
limk2	LIM domain kinase 2	0.013
tfe3a	transcription factor binding to IGHM enhancer 3a	0.013
stxbp3	syntaxin binding protein 3	0.013
slc30a9	solute carrier family 30 (zinc transporter), member 9	0.013
igf2r	insulin-like growth factor 2 receptor	0.013
sox9a	SRY-box containing gene 9a	0.013
fgf2	fibroblast growth factor 2	0.013
pacsin3	protein kinase C and casein kinase substrate in neurons 3	0.013
sec24c	SEC24 family, member C (S. cerevisiae)	0.013
trpv6	transient receptor potential cation channel, subfamily V, member 6	0.013
ywhabl	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like	0.013
zbtb4	zinc finger and BTB domain containing 4	0.013
ube2i2	ubiquitin-conjugating enzyme E2I2	0.012
tmem135	transmembrane protein 135	0.012
atoh1b	atonal homolog 1b	0.012
calua	calumenin a	0.012
abcb7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	0.012
zgc:113210	zgc:113210	0.012
tpst1	tyrosylprotein sulfotransferase 1	0.012
ogt.1	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1	0.012
abca12	ATP-binding cassette, sub-family A (ABC1), member 12	0.012
si:dkey-181m9.10	si:dkey-181m9.10	0.012
vasp	vasodilator-stimulated phosphoprotein	0.012
glceb	glucuronyl C5-epimerase b	0.012	Mouse Worm
sdf2	stromal cell-derived factor 2	0.012
tmem214	transmembrane protein 214	0.012
sdprb	serum deprivation response b	0.012
slc17a9b	solute carrier family 17, member 9b	0.012
fryb	furry homolog b (Drosophila)	0.012
nid2a	nidogen 2a (osteonidogen)	0.012
ncam2	neural cell adhesion molecule 2	0.012
sdf4	stromal cell derived factor 4	0.012
zgc:153260	zgc:153260	0.012
slc2a10	solute carrier family 2 (facilitated glucose transporter), member 10	0.012
golga5	golgi autoantigen, golgin subfamily a, 5	0.011
prdm5	PR domain containing 5	0.011
wnt2bb	wingless-type MMTV integration site family, member 2Bb	0.011
cyt1	type I cytokeratin, enveloping layer	0.011
zgc:92480	zgc:92480	0.011
mfn1	mitofusin 1	0.011
nkx3-1	NK3 homeobox 1	0.011
lndc1	ly6/neurotoxin domain containing 1	0.011
ncl1	nicalin	0.011
pthlh	parathyroid hormone-like hormone	0.011
ssr1	signal sequence receptor, alpha	0.011
si:ch211-160j6.2	si:ch211-160j6.2	0.011
polb	polymerase (DNA directed), beta	0.011
slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	0.011
wwp2	WW domain containing E3 ubiquitin protein ligase 2	0.011
fgd4	FYVE, RhoGEF and PH domain containing 4	0.011
slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	0.011
zeb1	zinc finger E-box binding homeobox 1	0.011
nar	no arches	0.011
ccr6b	chemokine (C-C motif) receptor 6b	0.011
ddx1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	0.011
smyd3	SET and MYND domain containing 3	0.011
hesx1	homeo box (expressed in ES cells) 1	0.011
mga	MAX gene associated	0.010
perp	PERP, TP53 apoptosis effector	0.010
e4f1	E4F transcription factor 1	0.010
npc1	Niemann-Pick disease, type C1	0.010
tekt2	tektin 2 (testicular)	0.010
prkcsh	protein kinase C substrate 80K-H	0.010
LOC100148845	neurogenin-1-like	0.010
zgc:56488	zgc:56488	0.010
odz4	odd Oz/ten-m homolog 4	0.010
zgc:101640	zgc:101640	0.010
unc45a	unc-45 homolog A (C. elegans)	0.010
arpp19b	cAMP-regulated phosphoprotein 19b	0.010
b3galnt2	beta-1,3-N-acetylgalactosaminyltransferase 2	0.010
grhl3	grainyhead-like 3	0.010
stxbp2	syntaxin binding protein 2	0.010
ca10a	carbonic anhydrase Xa	0.010
sb:cb1008	sb:cb1008	0.010
srp54	signal recognition particle 54	0.010
xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	0.010
mapk12	mitogen-activated protein kinase 12	0.010
aldh4a1	aldehyde dehydrogenase 4 family, member A1	0.010
axin2	axin 2 (conductin, axil)	0.010
txndc5	thioredoxin domain containing 5	0.010
rhov	ras homolog gene family, member V	0.010
LOC796298	isotocin receptor-like 1	0.010
eif5a2	eukaryotic translation initiation factor 5A2	0.010
appl2	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	0.010