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Danio rerio

3 genes annotated in zebrafish

regulation of mrna catabolic process

Any process that modulates the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

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Known genes in the process in zebrafish Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of mrna catabolic process"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of mrna catabolic process" (in gray)

Name	Description	Probability	Func Analog Organism
nanos3	nanos homolog 3	0.601
vasa	vasa homolog	0.519
dazl	daz-like gene	0.239
trpm7	transient receptor potential cation channel, subfamily M, member 7	0.152
fancl	Fanconi anemia, complementation group L	0.137
piwil1	piwi-like 1 (Drosophila)	0.118	Fly
sf1	splicing factor 1	0.104
zgc:153061	zgc:153061	0.087
brca2	breast cancer 2, early onset	0.086
pbx1a	pre-B-cell leukemia transcription factor 1a	0.085
ntrk3b	neurotrophic tyrosine kinase, receptor, type 3b	0.084
cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	0.068
tdrd1	tudor domain containing 1	0.066
otul	OTU like protein	0.064
sulf2l	sulfatase 2, like	0.062
zorba	Orb/CPEB-related RNA-binding protein	0.059
buc	bucky ball	0.057
vcl	vinculin	0.056
prkcbb	protein kinase C, beta b	0.053	Yeast
tdrd7	tudor domain containing 7	0.044
zgc:91930	zgc:91930	0.044
apc	adenomatosis polyposis coli	0.043
zgc:193933	zgc:193933	0.042
zgc:63721	zgc:63721	0.040
si:ch211-191d7.6	si:ch211-191d7.6	0.040
dtng	dystrobrevin, gamma and dystrobrevin, gamma-like	0.039
dlg2	discs, large (Drosophila) homolog 2	0.037
LOC100003514	protein kinase C alpha type-like	0.036
igf3	insulin-like growth factor 3	0.036
guca1c	guanylate cyclase activator 1C	0.035
fanca	Fanconi anemia, complementation group A	0.035
eomesa	eomesodermin homolog a	0.034
zgc:86759	zgc:86759	0.034
dlat	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	0.034
crb2a	crumbs homolog 2a	0.033
zgc:112986	zgc:112986	0.032
dnd	dead end	0.031
ilk	integrin linked kinase	0.031
pxn	paxillin	0.030
ptprsa	protein tyrosine phosphatase, receptor type, s, a	0.029
si:dkeyp-7c9.1	si:dkeyp-7c9.1	0.028
pgm1	phosphoglucomutase 1	0.028
zgc:113421	zgc:113421	0.027
zgc:153148	zgc:153148	0.027
skia	nuclear oncoprotein skia	0.026
birc5b	baculoviral IAP repeat-containing 5B	0.026
hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.026
rpl3	ribosomal protein L3	0.026
utrn	utrophin	0.025
epb41l5	erythrocyte membrane protein band 4.1 like 5	0.025
ptk2.1	protein tyrosine kinase 2a	0.024
huwe1	HECT, UBA and WWE domain containing 1	0.024
mapk1	mitogen-activated protein kinase 1	0.023
eef2b	eukaryotic translation elongation factor 2b	0.023
rbpms2	RNA binding protein with multiple splicing 2	0.023
supt6h	suppressor of Ty 6 homolog	0.023
xirp2b	xin actin-binding repeat containing 2b	0.023
inppl1a	inositol polyphosphate phosphatase-like 1a	0.023
znf711	zinc finger protein 711	0.023
pard3	par-3 partitioning defective 3 homolog (C. elegans)	0.022
henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	0.022
brd4	bromodomain containing 4	0.021
tjp2a	tight junction protein 2a (zona occludens 2)	0.021
lsm14ab	LSM14 homolog Ab (SCD6, S. cerevisiae)	0.021
dag1	dystroglycan 1	0.021
si:dkey-97i18.2	si:dkey-97i18.2	0.021
myh11a	myosin, heavy polypeptide 11, smooth muscle a	0.021
org	oogenesis-related gene	0.020
zgc:91985	zgc:91985	0.020
elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.020
slc30a7	solute carrier family 30 (zinc transporter), member 7	0.020
pnn	pinin, desmosome associated protein	0.019
zgc:66313	zgc:66313	0.019
ambra1	autophagy/beclin-1 regulator 1	0.019
ntrk2a	neurotrophic tyrosine kinase, receptor, type 2a	0.019
amh	anti-Mullerian hormone	0.019
piwil2	piwi-like 2 (Drosophila)	0.019	Fly
pglyrp2	peptidoglycan recognition protein 2	0.019
hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase	0.019
ca15b	carbonic anhydrase XV b	0.019
rspo3	R-spondin 3 homolog (Xenopus laevis)	0.018
pou3f3a	POU class 3 homeobox 3a	0.018
csad	cysteine sulfinic acid decarboxylase	0.018
LOC798577	NT-3 growth factor receptor-like	0.018
frmd6	FERM domain containing 6	0.018
si:ch1073-351m12.1	si:ch1073-351m12.1	0.018
eif3d	eukaryotic translation initiation factor 3, subunit D	0.018
sycp3l	synaptonemal complex protein 3 like	0.018
mkks	McKusick-Kaufman syndrome	0.018
upb1	ureidopropionase, beta	0.017
zgc:92745	zgc:92745	0.017
fam20b	family with sequence similarity 20, member B (H. sapiens)	0.017
LOC100148274	hypothetical protein LOC100148274	0.017
gamt	guanidinoacetate N-methyltransferase	0.017
stau2	staufen, RNA binding protein, homolog 2 (Drosophila)	0.017
hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.017
si:ch211-232m7.1	si:ch211-232m7.1	0.017
synj1	synaptojanin 1	0.017
nyx	nyctalopin	0.017
styk1	serine/threonine/tyrosine kinase 1	0.016
sardh	sarcosine dehydrogenase	0.016
sufu	suppressor of fused homolog (Drosophila)	0.016
fshb	follicle stimulating hormone, beta polypeptide	0.016
chm	choroideremia	0.016
pou5f1	POU domain, class 5, transcription factor 1	0.016
celsr3	cadherin, EGF LAG seven-pass G-type receptor 3	0.015
phex	phosphate regulating gene with homologues to endopeptidases on the X chromosome	0.015
gdf9	growth differentiation factor 9	0.015
st14a	suppression of tumorigenicity 14 (colon carcinoma) a	0.015
acp5b	acid phosphatase 5b, tartrate resistant	0.015
rpl13	ribosomal protein L13	0.015
yes1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1	0.015
sfxn1	sideroflexin 1	0.015
ppp4cb	protein phosphatase 4 (formerly X), catalytic subunit b	0.015
phlda1	pleckstrin homology-like domain, family A, member 1	0.015
ppp3cca	protein phosphatase 3, catalytic subunit, gamma isozyme, a	0.015
rpl19	ribosomal protein L19	0.015
ptprfb	protein tyrosine phosphatase, receptor type, f, b	0.015
myo10l1	myosin X-like 1	0.014
ddx21	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.014
lzts2a	leucine zipper, putative tumor suppressor 2a	0.014
prkcq	protein kinase C, theta	0.014	Yeast
zgc:112079	zgc:112079	0.014
si:ch211-57k11.10	si:ch211-57k11.10	0.014
lypd6	LY6/PLAUR domain containing 6	0.014
si:ch211-175f11.2	si:ch211-175f11.2	0.014
bag6	BCL2-associated athanogene 6	0.014
LOC100330730	spermatogenesis-associated protein 22-like	0.014
lrrfip2	leucine rich repeat (in FLII) interacting protein 2	0.014
mgp	matrix Gla protein	0.014
LOC561889	granulito	0.014
avpr1b	arginine vasopressin receptor 1B	0.014
terfa	telomeric repeat binding factor a	0.014
setd8a	SET domain containing (lysine methyltransferase) 8a	0.014
rps6ka1	ribosomal protein S6 kinase a, polypeptide 1	0.014
tcf7l2	transcription factor 7-like 2 (T-cell specific, HMG-box)	0.014
irf2bp2b	interferon regulatory factor 2 binding protein 2b	0.013
cltca	clathrin, heavy polypeptide a (Hc)	0.013
tubg1	tubulin, gamma 1	0.013
pdgfrb2	platelet derived growth factor receptor beta 2	0.013
dlst	dihydrolipoamide S-succinyltransferase	0.013
ndr1	nodal-related 1	0.013
bmpr1bb	bone morphogenetic protein receptor, type 1bb	0.013
wu:fj68a07	wu:fj68a07	0.013
si:dkey-6e12.4	si:dkey-6e12.4	0.013
grifin	galectin related inter-fiber protein	0.013
scp2	sterol carrier protein 2	0.013
celsr1b	cadherin EGF LAG seven-pass G-type receptor 1b	0.013
ehhadh	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	0.013
plp1a	proteolipid protein 1a	0.013
ogdh	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	0.013
ptk6a	PTK6 protein tyrosine kinase 6a	0.013
rnf17	ring finger protein 17	0.013
lrmp	lymphoid-restricted membrane protein	0.013
bdh2	3-hydroxybutyrate dehydrogenase, type 2	0.012
pcdh2ac	protocadherin 2 alpha c	0.012
grk7a	G-protein-coupled receptor kinase 7a	0.012
sb:cb472	sb:cb472	0.012
LOC572344	hypothetical protein LOC572344	0.012
asz1	ankyrin repeat, SAM and basic leucine zipper domain containing 1	0.012
dctn1a	dynactin 1a	0.012
mxtx2	mix-type homeobox gene 2	0.012
pno1	partner of NOB1 homolog (S. cerevisiae)	0.012
pkp2	plakophilin 2	0.012
ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.012
kmo	kynurenine 3-monooxygenase	0.012
si:ch211-207m11.1	si:ch211-207m11.1	0.012
slc24a5	solute carrier family 24, member 5	0.012
nadl1.1	neural adhesion molecule L1.1	0.012
lman2la	lectin, mannose-binding 2-like a	0.012
vdac3	voltage-dependent anion channel 3	0.012
pds5b	PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	0.012
pacsin3	protein kinase C and casein kinase substrate in neurons 3	0.012
irf2bp2a	interferon regulatory factor 2 binding protein 2a	0.012
tpm1	tropomyosin 1 (alpha)	0.012
si:dkey-151c10.1	si:dkey-151c10.1	0.012
map2k4a	mitogen-activated protein kinase kinase 4a	0.012
sema3aa	semaphorin 3aa	0.012
jam2b	junctional adhesion molecule 2b	0.011
nfia	nuclear factor I/A	0.011
tert	telomerase reverse transcriptase	0.011
prkcea	protein kinase C, epsilon a	0.011
tbpl2	TATA box binding protein like 2	0.011
igsf21a	immunoglobin superfamily, member 21a	0.011
ube4b	ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	0.011
col4a3	collagen, type IV, alpha 3	0.011
ppm1aa	protein phosphatase, Mg2+/Mn2+ dependent, 1Aa	0.011
zgc:66484	zgc:66484	0.011
im:7138016	im:7138016	0.011
irgq1	immunity-related GTPase family, q1	0.011
fanci	Fanconi anemia, complementation group I	0.011
macf1	microtubule-actin crosslinking factor 1	0.011
ddr2b	discoidin domain receptor family, member 2b	0.011
zgc:101723	zgc:101723	0.011
vim	vimentin	0.011
gpm6bb	glycoprotein M6Bb	0.011
or111-11	odorant receptor, family D, subfamily 111, member 11	0.011
selenbp1	selenium binding protein 1	0.011
kif5ba	kinesin family member 5B, a	0.011
ctnnb1	catenin (cadherin-associated protein), beta 1	0.011
dhcr24	24-dehydrocholesterol reductase	0.011
LOC100007758	novel protein similar to vertebrate SLIT and NTRK-like family, member 3 (SLITRK3)	0.011
zgc:112211	zgc:112211	0.011
btbd10b	BTB (POZ) domain containing 10b	0.011
fbxw4	F-box and WD-40 domain protein 4	0.011
si:dkey-39n1.2	si:dkey-39n1.2	0.011
taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto	0.011
si:ch211-272f3.4	si:ch211-272f3.4	0.011
rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	0.011
lrrk2	leucine-rich repeat kinase 2	0.011
ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.011
og9x	OG9 homeobox gene	0.011
cotl1	coactosin-like 1 (Dictyostelium)	0.011
ntrk2b	neurotrophic tyrosine kinase, receptor, type 2b	0.011
mpz	myelin protein zero	0.011
col4a2	collagen, type IV, alpha 2	0.011
pi4k2b	phosphatidylinositol 4-kinase type 2 beta	0.011
kif5c	kinesin family member 5C	0.011
caprin2	caprin family member 2	0.010
cfl2l	cofilin 2, like	0.010
zgc:171453	zgc:171453	0.010
dacha	dachshund a	0.010
aim1b	absent in melanoma 1b	0.010
dip2c	DIP2 disco-interacting protein 2 homolog C (Drosophila)	0.010
cfl2	cofilin 2 (muscle)	0.010
pabpc1b	poly A binding protein, cytoplasmic 1 b	0.010	Human Mouse
ap2a1	adaptor-related protein complex 2, alpha 1 subunit	0.010
kitlgb	kit ligand b	0.010
zgc:113210	zgc:113210	0.010
zgc:85939	zgc:85939	0.010
zgc:172101	zgc:172101	0.010
aldh4a1	aldehyde dehydrogenase 4 family, member A1	0.010
msi2b	musashi homolog 2b (Drosophila)	0.010
crb3b	crumbs homolog 3b	0.010
zgc:113054	zgc:113054	0.010
ktn1	kinectin 1	0.010
itga2b	integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)	0.010
si:ch211-198a12.6	si:ch211-198a12.6	0.010