The network for 'transcription from rna polymerase ii promoter' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

transcription from rna polymerase ii promoter

The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

Caenorhabditis elegans
Name Description Probability Func Analog Organism
pha-4 Protein PHA-4 0.999
egl-18 Protein EGL-18 0.998
elt-6 Protein ELT-6 0.989
nhr-67 Protein NHR-67 0.946
egl-13 Protein EGL-13 0.917
nhr-49 Protein NHR-49 0.916
ceh-20 Protein CEH-20 0.910
daf-14 Protein DAF-14 0.840
vab-3 Protein VAB-3 0.833
lin-36 Protein LIN-36 0.802
his-64 Protein HIS-64 0.796
unc-73 Protein UNC-73 0.777
bet-1 Protein BET-1 0.774
mat-3 Protein MAT-3 0.760
set-2 Protein SET-2 0.747
lin-35 Protein LIN-35 0.717
unc-62 Protein UNC-62 0.707
egl-46 Protein EGL-46 0.705
his-16 Protein HIS-16 0.702
his-61 Protein HIS-61 0.697
cnd-1 Protein CND-1 0.689
hlh-1 Protein HLH-1 0.681
nhr-2 Protein NHR-2 0.670
hlh-2 Protein HLH-2 0.667
daf-3 Protein DAF-3 0.666
fkh-2 Protein FKH-2 0.642
nhr-25 Protein NHR-25 0.642
mep-1 Protein MEP-1 0.612
set-1 Protein SET-1 0.605
zip-7 Protein ZIP-7 0.579
unc-37 Protein UNC-37 0.568
flt-1 Protein FLT-1 0.554
eya-1 Protein EYA-1 0.552
his-5 Protein HIS-5 0.543
hbl-1 Protein HBL-1 0.525
lin-12 Protein LIN-12 0.515
unc-86 Protein UNC-86 0.511
hcp-3 Protein HCP-3 0.509
skp-1 Protein SKP-1 0.500
his-1 Protein HIS-1 0.470
lin-53 Protein LIN-53 0.466
rsp-1 Protein RSP-1 0.455
ceh-27 Protein CEH-27 0.454
ztf-2 Protein ZTF-2 0.451
nhr-34 Protein NHR-34 0.445
ldb-1 Protein LDB-1 0.435
unc-43 Protein UNC-43 0.433
his-29 Protein HIS-29 0.422
eri-1 Protein ERI-1 0.404
attf-2 Protein ATTF-2 0.403
lag-1 Protein LAG-1 0.403
pop-1 Protein POP-1 0.403
egl-15 Protein EGL-15 0.398
asb-1 Protein ASB-1 0.394
his-52 Protein HIS-52 0.387
lin-29 Protein LIN-29 0.387
nhr-6 Protein NHR-6 0.383
frm-7 Protein FRM-7 0.377
lin-17 Protein LIN-17 0.376
ten-1 Protein TEN-1 0.374
pry-1 Protein PRY-1 0.372
gei-4 Protein GEI-4 0.370
pdr-1 Protein PDR-1 0.366
ceh-32 Protein CEH-32 0.360
his-50 Protein HIS-50 0.360
F33H1.4 Protein F33H1.4 0.355
hda-1 Protein HDA-1 0.346
ptr-2 Protein PTR-2 0.343
prp-21 Protein PRP-21 0.342
hmg-4 Protein HMG-4 0.341
hda-2 Protein HDA-2 0.340
cki-1 Protein CKI-1 0.338
lin-11 Protein LIN-11 0.335
zfp-1 Protein ZFP-1 0.335
F28C1.1 Protein F28C1.1 0.332
unc-42 Protein UNC-42 0.332
C46F11.4 Protein C46F11.4 0.331
sna-2 Protein SNA-2 0.330
mec-3 Protein MEC-3 0.324
rpn-2 Protein RPN-2 0.322
Y55D9A.2 Protein Y55D9A.2 0.318
ceh-34 Protein CEH-34 0.314
his-31 Protein HIS-31 0.310
wrk-1 Protein WRK-1 0.303
F08B4.7 Protein F08B4.7 0.294
fkh-9 Protein FKH-9 0.293
mab-5 Protein MAB-5 0.291
his-47 Protein HIS-47 0.290
F39B2.1 Protein F39B2.1 0.290
T09B4.5 Protein T09B4.5 0.289
daf-4 Protein DAF-4 0.288
his-39 Protein HIS-39 0.287
let-858 Protein LET-858 0.287
mom-2 Protein MOM-2 0.285
smp-1 Protein SMP-1 0.284
his-3 Protein HIS-3 0.282
hil-2 Protein HIL-2 0.279
sam-10 Protein SAM-10 0.279
abi-1 Protein ABI-1 0.271
hnd-1 Protein HND-1 0.271
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Danio rerio
Name Description Probability Func Analog Organism
chd chordin 0.992
tal1 T-cell acute lymphocytic leukemia 1 0.983
pax2a paired box gene 2a 0.967
bmp2b bone morphogenetic protein 2b 0.961
tll1 tolloid-like 1 0.953
pitx3 paired-like homeodomain transcription factor 3 0.940
flh floating head 0.936
ndr2 nodal-related 2 0.932
hoxd4a homeo box D4a 0.910
notch1a notch homolog 1a 0.903
foxi1 forkhead box I1 0.894
nkx2.2a NK2 transcription factor related 2a 0.892
gli1 GLI-Kruppel family member 1 0.882
gata6 GATA-binding protein 6 0.880
shha sonic hedgehog a 0.870
dcc deleted in colorectal carcinoma 0.866
lhx5 LIM homeobox 5 0.860
kdrl kinase insert domain receptor like 0.858
fgf8a fibroblast growth factor 8 a 0.852
lft1 lefty1 0.848
pcna proliferating cell nuclear antigen 0.834
hand2 heart and neural crest derivatives expressed transcript 2 0.830
bmp4 bone morphogenetic protein 4 0.811
otpb orthopedia homolog b 0.802
snai1b snail homolog 1b (Drosophila) 0.799
mafba v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) 0.798
eya1 eyes absent homolog 1 0.793
foxa3 forkhead box A3 0.793
foxa2 forkhead box A2 0.785
hoxb1b homeo box B1b 0.768
wt1a wilms tumor 1a 0.754
gata5 GATA-binding protein 5 0.740
tbx16 T-box gene 16 0.735
gro1 groucho 1 0.726
twist3 twist3 0.726
smyhc1 slow myosin heavy chain 1 0.726
tbx20 T-box 20 0.718
prdm1a PR domain containing 1a, with ZNF domain 0.710
lhx1a LIM homeobox 1a 0.709
gsc goosecoid 0.680
pitx2 paired-like homeodomain transcription factor 2 0.673
gata4 GATA-binding protein 4 0.664
fgf3 fibroblast growth factor 3 0.663
tyr tyrosinase 0.641
isl1 islet1 0.629
vent ventral expressed homeobox 0.620
klf4 Kruppel-like factor 4 0.613
dla deltaA 0.611
znf703 zinc finger protein 703 0.605
irx7 iroquois homeobox protein 7 0.599
tfap2a transcription factor AP-2 alpha 0.595
notch3 notch homolog 3 0.590
emx3 empty spiracles homeobox 3 0.588
nkx2.1b NK2 homeobox 1b 0.582
mab21l2 mab-21-like 2 0.564
dlx1a distal-less homeobox gene 1a 0.561
gbx2 gastrulation brain homeo box 2 0.560
spry4 sprouty (Drosophila) homolog 4 0.556
crabp2a cellular retinoic acid binding protein 2, a 0.556
fgfr4 fibroblast growth factor receptor 4 0.553
tbx5a T-box 5a 0.549
dlx2a distal-less homeobox gene 2a 0.548
tcf7l2 transcription factor 7-like 2 (T-cell specific, HMG-box) 0.547
nfkbiab nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b 0.542
tgfb3 transforming growth factor, beta 3 0.540
spaw southpaw 0.537
dkk1b dickkopf 1b 0.536
epha4a eph receptor A4a 0.528
sim1a single-minded homolog 1a (Drosophila) 0.512
ctgf connective tissue growth factor 0.510
nadl1.1 neural adhesion molecule L1.1 0.508
kita kit receptor a 0.499
lft2 lefty2 0.492
sox10 SRY-box containing gene 10 0.491
zic2a zic family member 2 (odd-paired homolog, Drosophila), a 0.490
ptf1a pancreas specific transcription factor, 1a 0.488
jun jun proto-oncogene 0.485
sox1a SRY-box containing gene 1a 0.483
wnt8a wingless-type MMTV integration site family, member 8a 0.480
smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 0.479
ascl1a achaete-scute complex-like 1a (Drosophila) 0.475
dlx3b distal-less homeobox gene 3b 0.471
hnf1ba HNF1 homeobox Ba 0.464
notch1b notch homolog 1b 0.461
sumo3a SMT3 suppressor of mif two 3 homolog 3a 0.451
sox32 SRY-box containing gene 32 0.451
raraa retinoic acid receptor, alpha a 0.448
socs3a suppressor of cytokine signaling 3a 0.446
tp53 tumor protein p53 0.445
jag1b jagged 1b 0.445
smad5 MAD homolog 5 (Drosophila) 0.445
osr1 odd-skipped related 1 (Drosophila) 0.437
jag2 jagged 2 0.436
col2a1a collagen type II, alpha-1a 0.435
mll myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) 0.435
sox2 SRY-box containing gene 2 0.434
prox1 prospero-related homeobox gene 1 0.433
hoxb2a homeo box B2a 0.427
lhx1b LIM homeobox 1b 0.422
six1b sine oculis homeobox homolog 1b 0.417
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Drosophila melanogaster
Name Description Probability Func Analog Organism
pan pangolin 1.000
Ubx Ultrabithorax 0.999
Egfr Epidermal growth factor receptor 0.998
bcd bicoid 0.996
wg wingless 0.995
N Notch 0.994
Snr1 Snf5-related 1 0.993
rpr reaper 0.992
Ser Serrate 0.990
ci cubitus interruptus 0.990
EcR Ecdysone receptor 0.988
dpp decapentaplegic 0.987
slmb supernumerary limbs 0.986
brk brinker 0.986
slp1 sloppy paired 1 0.985
toy twin of eyeless 0.983
MED17 Mediator complex subunit 17 0.982
Antp Antennapedia 0.981
dac dachshund 0.977
kay kayak 0.972
MED15 Mediator complex subunit 15 0.970
cnc cap-n-collar 0.970
en engrailed 0.969
pr-set7 CG3307 gene product from transcript CG3307-RC 0.967
ftz-f1 ftz transcription factor 1 0.967
Pc Polycomb 0.966
tws twins 0.965
nmo nemo 0.963
Fmr1 CG6203 gene product from transcript CG6203-RC 0.961
Abd-B Abdominal B 0.961
ap apterous 0.961
klu klumpfuss 0.957
pnt pointed 0.955
kis kismet 0.953
eya eyes absent 0.953
shn schnurri 0.952
Ras85D Ras oncogene at 85D 0.951
hep hemipterous 0.950
gsb gooseberry 0.950
opa odd paired 0.949
ss spineless 0.948
ato atonal 0.943
ash1 absent, small, or homeotic discs 1 0.940
Tor Target of rapamycin 0.937
hth homothorax 0.929
eyg eyegone 0.929
Akt1 CG4006 gene product from transcript CG4006-RA 0.927
shi shibire 0.925
tin tinman 0.925
east enhanced adult sensory threshold 0.924
nub nubbin 0.924
lola longitudinals lacking 0.923
InR Insulin-like receptor 0.918
Pi3K92E CG4141 gene product from transcript CG4141-RB 0.918
abd-A abdominal A 0.914
spn-A spindle A 0.913
CTCF CG8591 gene product from transcript CG8591-RA 0.912
al aristaless 0.909
MED6 Mediator complex subunit 6 0.909
pb proboscipedia 0.907
Tl Toll 0.905
Axn Axin 0.899
tll tailless 0.899
dsh dishevelled 0.897
eve even skipped 0.897
dco discs overgrown 0.897
rho rhomboid 0.895
ey eyeless 0.894
spen split ends 0.892
trx trithorax 0.891
so sine oculis 0.884
Pka-C1 cAMP-dependent protein kinase 1 0.880
run runt 0.878
ara araucan 0.877
tkv thickveins 0.870
vvl ventral veins lacking 0.869
Lam Lamin 0.864
prd paired 0.864
Mef2 Myocyte enhancer factor 2 0.860
MED11 Mediator complex subunit 11 0.854
btl breathless 0.853
fl(2)d female lethal d 0.852
CkIIalpha Casein kinase II alpha subunit 0.847
Su(H) Suppressor of Hairless 0.841
CG32685 CG32685 gene product from transcript CG32685-RC 0.839
tsh teashirt 0.837
Nf-YC Nuclear factor Y-box C 0.833
bowl brother of odd with entrails limited 0.832
hh hedgehog 0.830
HLHm7 E(spl) region transcript m7 0.828
mid midline 0.824
dom domino 0.824
ems empty spiracles 0.822
ex expanded 0.822
osa CG7467 gene product from transcript CG7467-RD 0.821
sev sevenless 0.819
tld tolloid 0.813
kn knot 0.812
Rca1 Regulator of cyclin A1 0.811
oc ocelliless 0.811
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Homo sapiens
Name Description Probability Func Analog Organism
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Mus musculus
Name Description Probability Func Analog Organism
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Rattus norvegicus
Name Description Probability Func Analog Organism
Junb jun B proto-oncogene 0.979
Dusp1 dual specificity phosphatase 1 0.978
Jun Jun oncogene 0.883
Cebpb CCAAT/enhancer binding protein (C/EBP), beta 0.872
Ppp1r15a protein phosphatase 1, regulatory (inhibitor) subunit 15A 0.849
Fos FBJ osteosarcoma oncogene 0.837
Nr4a3 nuclear receptor subfamily 4, group A, member 3 0.800
Irs1 insulin receptor substrate 1 0.764
Jak2 Janus kinase 2 0.763
Zfp36 zinc finger protein 36 0.749
Met met proto-oncogene 0.700
Atf3 activating transcription factor 3 0.668
Egr1 early growth response 1 0.654
Nr4a1 nuclear receptor subfamily 4, group A, member 1 0.622
Smad1 SMAD family member 1 0.613
Aqp2 aquaporin 2 (collecting duct) 0.590
Btg2 BTG family, member 2 0.584
Klf13 Kruppel-like factor 13 0.566
Ager advanced glycosylation end product-specific receptor 0.558
Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 0.548
Jund jun D proto-oncogene 0.547
Sp1 Sp1 transcription factor 0.544
Lad1 ladinin 1 0.522
Gast gastrin 0.521
Sfpq splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) 0.518
Hes1 hairy and enhancer of split 1 (Drosophila) 0.517
Tgfbr2 transforming growth factor, beta receptor II 0.514
Errfi1 ERBB receptor feedback inhibitor 1 0.511
Pax8 paired box 8 0.511
Tcf4 transcription factor 4 0.510
Erbb4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 0.461
Wbp11 WW domain binding protein 11 0.450
Foxe3 forkhead box E3 0.432
Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.426
Purb purine rich element binding protein B 0.424
Stat6 signal transducer and activator of transcription 6 0.422
Tceb3 transcription elongation factor B (SIII), polypeptide 3 0.414
Nr4a2 nuclear receptor subfamily 4, group A, member 2 0.410
Lhx1 LIM homeobox 1 0.405
Rara retinoic acid receptor, alpha 0.403
Ier3 immediate early response 3 0.402
Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 0.402
S100a9 S100 calcium binding protein A9 0.398
Barhl1 BarH-like homeobox 1 0.395
Pacs1 phosphofurin acidic cluster sorting protein 1 0.393
Ier2 immediate early response 2 0.392
Foxa3 forkhead box A3 0.387
Arnt aryl hydrocarbon receptor nuclear translocator 0.385
Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2 0.384
Nfya nuclear transcription factor-Y alpha 0.377
Ngfr nerve growth factor receptor (TNFR superfamily, member 16) 0.377
Neurog1 neurogenin 1 0.373
Klf9 Kruppel-like factor 9 0.373
Grin2b glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.372
Ube2g1 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast) 0.372
Dusp6 dual specificity phosphatase 6 0.370
Mapk14 mitogen activated protein kinase 14 0.367
Socs7 suppressor of cytokine signaling 7 0.366
Pou3f2 POU class 3 homeobox 2 0.365
Fgfr2 fibroblast growth factor receptor 2 0.363
Ifrd1 interferon-related developmental regulator 1 0.362
Slc22a6 solute carrier family 22 (organic anion transporter), member 6 0.358
Adcy5 adenylate cyclase 5 0.358
Nr2f6 nuclear receptor subfamily 2, group F, member 6 0.350
Tgfbr3 transforming growth factor, beta receptor III 0.350
Defb1 defensin beta 1 0.350
P2rx3 purinergic receptor P2X, ligand-gated ion channel, 3 0.345
Bmp3 bone morphogenetic protein 3 0.344
Shox2 short stature homeobox 2 0.339
Robo1 roundabout homolog 1 (Drosophila) 0.336
Myl6l myosin, light polypeptide 6, alkali, smooth muscle and non-muscle-like 0.332
Tcfe2a transcription factor E2a 0.330
Rxrb retinoid X receptor beta 0.323
Dctn1 dynactin 1 0.323
Itgam integrin, alpha M 0.320
Litaf lipopolysaccharide-induced TNF factor 0.320
Clcn5 chloride channel 5 0.317
Cxxc4 CXXC finger 4 0.316
Hoxb7 homeo box B7 0.310
Umod uromodulin 0.309
Ptafr platelet-activating factor receptor 0.309
Mov10 Moloney leukemia virus 10 0.307
Clps colipase, pancreatic 0.306
Crybb3 crystallin, beta B3 0.305
Stat3 signal transducer and activator of transcription 3 0.303
Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a 0.303
Creb1 cAMP responsive element binding protein 1 0.301
Nr1d2 nuclear receptor subfamily 1, group D, member 2 0.300
Ptpn1 protein tyrosine phosphatase, non-receptor type 1 0.300
Adcy4 adenylate cyclase 4 0.298
Ascl2 achaete-scute complex homolog 2 (Drosophila) 0.298
Homer1 homer homolog 1 (Drosophila) 0.298
Klf2 Kruppel-like factor 2 (lung) 0.298
Id3 inhibitor of DNA binding 3 0.297
Fgfr1 Fibroblast growth factor receptor 1 0.295
Ssrp1 structure specific recognition protein 1 0.290
Igfbp5 insulin-like growth factor binding protein 5 0.286
Phkg1 phosphorylase kinase, gamma 1 0.285
Sbk1 SH3-binding domain kinase 1 0.285
Id1 inhibitor of DNA binding 1 0.284
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Saccharomyces cerevisiae
Name Description Probability Func Analog Organism