The network for 'positive regulation of transcription from rna polymerase ii promoter' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

positive regulation of transcription from rna polymerase ii promoter

Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.

Saccharomyces cerevisiae
Name Description Probability Func Analog Organism
GCN5 Gcn5p 1.000
GAL11 Gal11p 0.999
SIN3 Sin3p 0.999
HOG1 Hog1p 0.990
GLN3 Gln3p 0.989
ADA2 Ada2p 0.988
SWI1 Swi1p 0.987
SNF5 Snf5p 0.983
MED1 Med1p 0.983
RGR1 Rgr1p 0.981
MSN2 Msn2p 0.981
SNF6 Snf6p 0.980
CHD1 Chd1p 0.980
SSN3 Ssn3p 0.977
RTF1 Rtf1p 0.969
UBP3 Ubp3p 0.966
SSN2 Ssn2p 0.950
CYC8 Cyc8p 0.945
SWI6 Swi6p 0.944
TAF14 Taf14p 0.942
HHT1 Hht1p 0.940
CSE2 Cse2p 0.936
SPT15 Spt15p 0.934
NRG1 Nrg1p 0.932
CTR9 Ctr9p 0.930
RSC4 Rsc4p 0.923
PAF1 Paf1p 0.918
ROX3 Rox3p 0.914
RAP1 Rap1p 0.912
SRB5 Srb5p 0.911
TAF5 Taf5p 0.910
RIM101 Rim101p 0.909
MET4 Met4p 0.906
YAP1 Yap1p 0.899
PGD1 Pgd1p 0.898
RPT6 Rpt6p 0.891
MSN4 Msn4p 0.886
SRB4 Srb4p 0.885
SWI3 Swi3p 0.880
SIN4 Sin4p 0.880
RPN4 Rpn4p 0.874
RVB2 Rvb2p 0.873
TAF10 Taf10p 0.870
AFT1 Aft1p 0.869
SPT8 Spt8p 0.866
RPD3 Rpd3p 0.862
FKH1 Fkh1p 0.860
KSS1 Kss1p 0.855
CTK3 Ctk3p 0.854
NUT2 Nut2p 0.827
SRB2 Srb2p 0.827
RTG3 Rtg3p 0.825
SRB6 Srb6p 0.822
PHO80 Pho80p 0.813
TAF12 Taf12p 0.801
MOT2 Mot2p 0.779
GAL80 Gal80p 0.778
MED6 Med6p 0.770
SNF1 Snf1p 0.770
CDC39 Cdc39p 0.760
CCR4 Ccr4p 0.753
MSS11 Mss11p 0.753
PCC1 Pcc1p 0.746
SPT5 Spt5p 0.742
MSN1 Msn1p 0.738
IXR1 Ixr1p 0.737
SNF2 Snf2p 0.728
BDF1 Bdf1p 0.720
MED8 Med8p 0.714
DOT6 Dot6p 0.712
PHO23 Pho23p 0.711
YTA7 Yta7p 0.703
HAP5 Hap5p 0.701
SSL1 Ssl1p 0.698
MED2 Med2p 0.696
ARG81 Arg81p 0.678
HAP4 Hap4p 0.677
TFB4 Tfb4p 0.676
RAS2 Ras2p 0.674
CAT8 Cat8p 0.668
RTG1 Rtg1p 0.663
YAK1 Yak1p 0.660
TFB1 Tfb1p 0.649
CDC28 Cdc28p 0.639
CRZ1 Crz1p 0.633
ITC1 Itc1p 0.631
YRR1 Yrr1p 0.630
FLO8 Flo8p 0.623
RDS2 Rds2p 0.617
POB3 Pob3p 0.617
HMO1 Hmo1p 0.613
NOT5 Not5p 0.611
MED4 Med4p 0.604
SPT20 Spt20p 0.596
PSH1 Psh1p 0.586
TAF3 Taf3p 0.580
UPC2 Upc2p 0.578
TAF9 Taf9p 0.578
TAF4 Taf4p 0.572
NPR1 Npr1p 0.571
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Caenorhabditis elegans
Name Description Probability Func Analog Organism
egl-18 Protein EGL-18 1.000
pha-4 Protein PHA-4 0.999
nhr-67 Protein NHR-67 0.996
elt-6 Protein ELT-6 0.996
lin-35 Protein LIN-35 0.957
vab-3 Protein VAB-3 0.947
unc-42 Protein UNC-42 0.945
eya-1 Protein EYA-1 0.936
fkh-2 Protein FKH-2 0.920
mig-15 Protein MIG-15 0.875
unc-73 Protein UNC-73 0.873
cnd-1 Protein CND-1 0.869
daf-14 Protein DAF-14 0.850
his-1 Protein HIS-1 0.836
zip-7 Protein ZIP-7 0.835
lin-17 Protein LIN-17 0.812
cam-1 Protein CAM-1 0.802
egl-46 Protein EGL-46 0.787
unc-62 Protein UNC-62 0.787
vab-1 Protein VAB-1 0.774
daf-3 Protein DAF-3 0.762
pry-1 Protein PRY-1 0.741
ceh-20 Protein CEH-20 0.739
nhr-6 Protein NHR-6 0.708
sma-6 Protein SMA-6 0.698
egl-44 Protein EGL-44 0.697
nhr-49 Protein NHR-49 0.685
egl-13 Protein EGL-13 0.664
lin-36 Protein LIN-36 0.626
pop-1 Protein POP-1 0.622
ceh-27 Protein CEH-27 0.616
ztf-2 Protein ZTF-2 0.593
ldb-1 Protein LDB-1 0.591
lin-12 Protein LIN-12 0.588
flt-1 Protein FLT-1 0.583
hbl-1 Protein HBL-1 0.575
set-1 Protein SET-1 0.571
pas-6 Protein PAS-6 0.557
his-46 Protein HIS-46 0.553
let-60 Protein LET-60 0.550
his-64 Protein HIS-64 0.533
pbrm-1 Protein PBRM-1 0.519
daf-1 Protein DAF-1 0.514
mab-31 Protein MAB-31 0.510
hlh-2 Protein HLH-2 0.507
unc-43 Protein UNC-43 0.500
cki-1 Protein CKI-1 0.500
mec-2 Protein MEC-2 0.491
ten-1 Protein TEN-1 0.479
pqn-44 Protein PQN-44 0.472
Y87G2A.1 Protein Y87G2A.1 0.464
tps-1 Protein TPS-1 0.461
T23F4.2 Protein T23F4.2 0.457
rad-26 Protein RAD-26 0.450
snr-3 Protein SNR-3 0.447
unc-86 Protein UNC-86 0.441
egl-27 Protein EGL-27 0.438
sma-9 Protein SMA-9 0.434
sel-10 Protein SEL-10 0.421
mat-3 Protein MAT-3 0.404
hlh-1 Protein HLH-1 0.401
CELE_Y46G5A.8 Protein Y46G5A.8 0.396
nhr-34 Protein NHR-34 0.389
mab-5 Protein MAB-5 0.386
sdz-28 Protein SDZ-28 0.385
zfp-1 Protein ZFP-1 0.372
drap-1 Protein DRAP-1 0.367
mep-1 Protein MEP-1 0.363
tax-4 Protein TAX-4 0.362
zfp-3 Protein ZFP-3 0.354
sna-2 Protein SNA-2 0.350
hum-5 Protein HUM-5 0.345
Y102A11A.6 Protein Y102A11A.6 0.340
gei-4 Protein GEI-4 0.327
F13B12.1 Protein F13B12.1 0.324
magu-2 Protein MAGU-2 0.316
ceh-16 Protein CEH-16 0.315
mdt-8 Protein MDT-8 0.310
hnd-1 Protein HND-1 0.309
rpt-3 Protein RPT-3 0.307
CELE_F36D3.1 Protein F36D3.1 0.299
pes-1 Protein PES-1 0.299
cfim-2 Protein CFIM-2 0.293
F54C8.4 Protein F54C8.4 0.290
soc-2 Protein SOC-2 0.285
elt-3 Protein ELT-3 0.283
mls-2 Protein MLS-2 0.281
his-5 Protein HIS-5 0.279
ref-2 Protein REF-2 0.274
uri-1 Protein URI-1 0.274
ceh-34 Protein CEH-34 0.270
tag-260 Protein TAG-260 0.267
sel-2 Protein SEL-2 0.267
ptr-2 Protein PTR-2 0.265
akt-2 Protein AKT-2 0.260
fox-1 Protein FOX-1 0.260
pac-1 Protein PAC-1 0.252
sin-3 Protein SIN-3 0.248
peb-1 Protein PEB-1 0.248
dlk-1 Protein DLK-1 0.247
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Danio rerio
Name Description Probability Func Analog Organism
tal1 T-cell acute lymphocytic leukemia 1 0.973
gata3 GATA-binding protein 3 0.971
pitx2 paired-like homeodomain transcription factor 2 0.927
eya1 eyes absent homolog 1 0.920
myod1 myogenic differentiation 1 0.912
shha sonic hedgehog a 0.901
gli1 GLI-Kruppel family member 1 0.863
nkx2.2a NK2 transcription factor related 2a 0.843
hnf1ba HNF1 homeobox Ba 0.837
bmp4 bone morphogenetic protein 4 0.837
bmp2b bone morphogenetic protein 2b 0.767
foxi1 forkhead box I1 0.699
lhx1a LIM homeobox 1a 0.674
epha4a eph receptor A4a 0.664
gata2a GATA-binding protein 2a 0.657
kdrl kinase insert domain receptor like 0.596
cmyb transcription factor cmyb 0.583
pax6a paired box gene 6a 0.558
lhx5 LIM homeobox 5 0.554
gata5 GATA-binding protein 5 0.541
hoxa10b homeo box A10b 0.519
pax2a paired box gene 2a 0.500
gata6 GATA-binding protein 6 0.492
sox9a SRY-box containing gene 9a 0.456
klf4 Kruppel-like factor 4 0.453
hoxd13a homeo box D13a 0.434
dlx2a distal-less homeobox gene 2a 0.429
tbx20 T-box 20 0.425
gbx2 gastrulation brain homeo box 2 0.424
hoxc4a homeo box C4a 0.423
lmx1b.1 LIM homeobox transcription factor 1, beta 1 0.421
evx1 even-skipped homeobox 1 0.417
nrg2a neuregulin 2a 0.413
otpb orthopedia homolog b 0.399
foxa3 forkhead box A3 0.395
pitx3 paired-like homeodomain transcription factor 3 0.392
mef2d myocyte enhancer factor 2d 0.389
pomca proopiomelanocortin a 0.384
hand2 heart and neural crest derivatives expressed transcript 2 0.371
hoxa13a homeo box A13a 0.370
runx2b runt-related transcription factor 2b 0.367
mab21l2 mab-21-like 2 0.366
six4b sine oculis homeobox homolog 4b 0.366
tfap2a transcription factor AP-2 alpha 0.363
spaw southpaw 0.362
notch1a notch homolog 1a 0.359
dlb deltaB 0.351
atoh1b atonal homolog 1b 0.346
efnb1 ephrin B1 0.318
fgfr4 fibroblast growth factor receptor 4 0.313
six3b sine oculis homeobox homolog 3b 0.300
thrb thyroid hormone receptor beta 0.300
irx7 iroquois homeobox protein 7 0.300
ptgs2a prostaglandin-endoperoxide synthase 2a 0.298
raraa retinoic acid receptor, alpha a 0.293
flh floating head 0.277
hoxa11a homeo box A11a 0.273
hoxa9a homeo box A9a 0.270
nkx2.5 NK2 transcription factor related 5 0.268
zic1 zic family member 1 (odd-paired homolog, Drosophila) 0.268
hey1 hairy/enhancer-of-split related with YRPW motif 1 0.266
mespb mesoderm posterior b 0.264
nr2f2 nuclear receptor subfamily 2, group F, member 2 0.256
fzd8a frizzled homolog 8a 0.255
chd chordin 0.251
trim71 tripartite motif-containing 71 0.243
gata1a GATA binding protein 1a 0.241
pax7a paired box gene 7a 0.233
fezf2 FEZ family zinc finger 2 0.230
gdf6a growth differentiation factor 6a 0.229
eomesa eomesodermin homolog a 0.227
dlc deltaC 0.223
foxg1a forkhead box G1a 0.222
prl prolactin 0.219
hoxd10a homeo box D10a 0.218
tbx1 T-box 1 0.217
ndr2 nodal-related 2 0.212
fgfr3 fibroblast growth factor receptor 3 0.211
dlx5a distal-less homeobox gene 5a 0.207
prox1 prospero-related homeobox gene 1 0.202
sox1a SRY-box containing gene 1a 0.199
olig2 oligodendrocyte lineage transcription factor 2 0.190
hoxb1b homeo box B1b 0.190
wt1a wilms tumor 1a 0.189
runx2a runt-related transcription factor 2a 0.176
pax5 paired box gene 5 0.173
her1 hairy-related 1 0.171
egr2b early growth response 2b 0.170
rest RE1-silencing transcription factor 0.169
vsx2 visual system homeobox 2 0.168
hoxd11a homeo box D11a 0.167
nova2 neuro-oncological ventral antigen 2 0.165
foxi3a forkhead box I3a 0.164
hoxc10a homeo box C10a and homeobox protein Hox-C10a-like 0.162
fsta follistatin a 0.162
tll1 tolloid-like 1 0.160
etv2 ets variant gene 2 0.159
mespa mesoderm posterior a 0.158
fgfr2 fibroblast growth factor receptor 2 0.156
nkx2.3 NK2 transcription factor related 3 0.154
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Drosophila melanogaster
Name Description Probability Func Analog Organism
ci cubitus interruptus 0.998
wg wingless 0.998
E(spl) Enhancer of split 0.998
Ubx Ultrabithorax 0.997
phl pole hole 0.996
EcR Ecdysone receptor 0.993
opa odd paired 0.993
trx trithorax 0.993
pan pangolin 0.993
eyg eyegone 0.992
eya eyes absent 0.992
dpp decapentaplegic 0.986
tin tinman 0.982
heph hephaestus 0.981
hep hemipterous 0.980
mor moira 0.980
Egfr Epidermal growth factor receptor 0.980
CG11347 CG11347 gene product from transcript CG11347-RE 0.979
Antp Antennapedia 0.978
gcm glial cells missing 0.976
Ras85D Ras oncogene at 85D 0.972
pb proboscipedia 0.970
ato atonal 0.968
ftz-f1 ftz transcription factor 1 0.964
nmo nemo 0.962
Snr1 Snf5-related 1 0.957
Ser Serrate 0.956
hkb huckebein 0.953
ey eyeless 0.953
rpr reaper 0.950
slp1 sloppy paired 1 0.950
Dll Distal-less 0.949
Tl Toll 0.948
esg escargot 0.948
en engrailed 0.946
Dcp-1 Death caspase-1 0.944
Pi3K92E CG4141 gene product from transcript CG4141-RB 0.940
dco discs overgrown 0.940
shn schnurri 0.939
brm brahma 0.937
e(y)3 enhancer of yellow 3 0.932
sns sticks and stones 0.930
MED15 Mediator complex subunit 15 0.929
ara araucan 0.929
InR Insulin-like receptor 0.928
Tollo CG6890 gene product from transcript CG6890-RA 0.923
osa CG7467 gene product from transcript CG7467-RD 0.918
dom domino 0.914
Pc Polycomb 0.914
dac dachshund 0.913
abd-A abdominal A 0.912
N Notch 0.907
sd scalloped 0.894
BRWD3 CG31132 gene product from transcript CG31132-RA 0.893
Su(H) Suppressor of Hairless 0.891
Lam Lamin 0.880
gsb gooseberry 0.874
dsh dishevelled 0.870
gt giant 0.870
slou slouch 0.865
HLHm7 E(spl) region transcript m7 0.861
fkh fork head 0.859
kis kismet 0.857
ush u-shaped 0.848
Doc2 Dorsocross2 0.845
Fmr1 CG6203 gene product from transcript CG6203-RC 0.838
kay kayak 0.831
eve even skipped 0.829
dsx doublesex 0.827
lwr lesswright 0.826
bcd bicoid 0.823
sna snail 0.823
hth homothorax 0.822
ed echinoid 0.819
klu klumpfuss 0.818
ems empty spiracles 0.809
Dfd Deformed 0.807
fru fruitless 0.799
Abd-B Abdominal B 0.797
prd paired 0.797
h hairy 0.795
p53 CG33336 gene product from transcript CG33336-RB 0.795
nub nubbin 0.791
Dsor1 Downstream of raf1 0.786
east enhanced adult sensory threshold 0.783
Rel Relish 0.782
Chro Chromator 0.776
phyl phyllopod 0.773
Optix CG18455 gene product from transcript CG18455-RA 0.772
Kr Kruppel 0.768
hbs hibris 0.763
Rbf Retinoblastoma-family protein 0.762
amos absent MD neurons and olfactory sensilla 0.762
pdm2 POU domain protein 2 0.758
osk oskar 0.749
pnr pannier 0.744
Nrg Neuroglian 0.738
toy twin of eyeless 0.738
Mad Mothers against dpp 0.738
org-1 optomotor-blind-related-gene-1 0.736
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Homo sapiens
Name Description Probability Func Analog Organism
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Mus musculus
Name Description Probability Func Analog Organism
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Rattus norvegicus
Name Description Probability Func Analog Organism
Btg2 BTG family, member 2 0.875
Nr4a1 nuclear receptor subfamily 4, group A, member 1 0.823
Zfp36 zinc finger protein 36 0.818
Junb jun B proto-oncogene 0.803
Egr1 early growth response 1 0.777
Ppp1r15a protein phosphatase 1, regulatory (inhibitor) subunit 15A 0.772
Tgfbr2 transforming growth factor, beta receptor II 0.756
Tcfe2a transcription factor E2a 0.702
Nr4a3 nuclear receptor subfamily 4, group A, member 3 0.681
Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 0.668
Fgfr2 fibroblast growth factor receptor 2 0.615
Fgfr1 Fibroblast growth factor receptor 1 0.591
Dusp1 dual specificity phosphatase 1 0.572
Nfib nuclear factor I/B 0.565
Aqp2 aquaporin 2 (collecting duct) 0.473
Fos FBJ osteosarcoma oncogene 0.465
Rara retinoic acid receptor, alpha 0.445
Atf3 activating transcription factor 3 0.443
Cebpb CCAAT/enhancer binding protein (C/EBP), beta 0.427
Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 0.388
Jun Jun oncogene 0.367
Smad1 SMAD family member 1 0.357
Scgb1a1 secretoglobin, family 1A, member 1 (uteroglobin) 0.353
Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 0.343
Jak2 Janus kinase 2 0.341
Foxa1 forkhead box A1 0.337
Ascl1 achaete-scute complex homolog 1 (Drosophila) 0.333
Hoxd3 homeo box D3 0.305
Notch3 Notch homolog 3 (Drosophila) 0.304
Cebpa CCAAT/enhancer binding protein (C/EBP), alpha 0.303
Hand2 heart and neural crest derivatives expressed 2 0.300
Mrgprf MAS-related GPR, member F 0.298
Foxd3 forkhead box D3 0.291
Nedd4 neural precursor cell expressed, developmentally down-regulated 4 0.291
Jak1 Janus kinase 1 0.290
Msx2 msh homeobox 2 0.287
Gjb3 gap junction protein, beta 3 0.278
Ubtf upstream binding transcription factor, RNA polymerase I 0.270
Met met proto-oncogene 0.270
Ahr aryl hydrocarbon receptor 0.268
Iapp islet amyloid polypeptide 0.256
Nr4a2 nuclear receptor subfamily 4, group A, member 2 0.253
Casp2 caspase 2 0.250
Tcf4 transcription factor 4 0.247
Svs1 seminal vesicle secretory protein 1 0.244
Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.239
Sox17 SRY (sex determining region Y)-box 17 0.238
Dll3 delta-like 3 (Drosophila) 0.233
Crebbp CREB binding protein 0.233
Top2b topoisomerase (DNA) II beta 0.232
Pacs1 phosphofurin acidic cluster sorting protein 1 0.229
Ctdsp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 0.228
Gucy2g guanylate cyclase 2G 0.225
Bat3 HLA-B-associated transcript 3 0.224
Ngfr nerve growth factor receptor (TNFR superfamily, member 16) 0.224
Erbb3 v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) 0.221
Phkg1 phosphorylase kinase, gamma 1 0.216
Vdr vitamin D (1,25- dihydroxyvitamin D3) receptor 0.215
Akap1 A kinase (PRKA) anchor protein 1 0.210
Erbb4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 0.208
Nr1d2 nuclear receptor subfamily 1, group D, member 2 0.207
Nek9 NIMA (never in mitosis gene a)- related kinase 9 0.207
Foxd1 forkhead box D1 0.207
Ttc36 tetratricopeptide repeat domain 36 0.207
Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2 0.206
Gpr20 G protein-coupled receptor 20 0.205
Lama5 laminin, alpha 5 0.205
Nup88 nucleoporin 88 0.204
Irf2 interferon regulatory factor 2 0.203
Sp1 Sp1 transcription factor 0.201
Nr2f6 nuclear receptor subfamily 2, group F, member 6 0.201
Slc18a3 solute carrier family 18 (vesicular acetylcholine), member 3 0.198
Stat6 signal transducer and activator of transcription 6 0.196
Myh9 myosin, heavy chain 9, non-muscle 0.196
Usf2 upstream transcription factor 2, c-fos interacting 0.196
Map3k3 mitogen activated protein kinase kinase kinase 3 0.195
Il6st interleukin 6 signal transducer 0.194
Sorbs3 sorbin and SH3 domain containing 3 0.192
Shox2 short stature homeobox 2 0.191
Ctrb1 chymotrypsinogen B1 0.190
Meox2 mesenchyme homeobox 2 0.189
Akt1 v-akt murine thymoma viral oncogene homolog 1 0.186
Dlx5 distal-less homeobox 5 0.185
Esr1 estrogen receptor 1 0.184
Onecut1 one cut homeobox 1 0.184
Klf6 Kruppel-like factor 6 0.184
Barhl1 BarH-like homeobox 1 0.183
Gpr4 G protein-coupled receptor 4 0.181
Crybb3 crystallin, beta B3 0.180
Irs1 insulin receptor substrate 1 0.177
Impg2 interphotoreceptor matrix proteoglycan 2 0.177
Pax8 paired box 8 0.175
Stard8 StAR-related lipid transfer (START) domain containing 8 0.173
Map4k1 mitogen activated protein kinase kinase kinase kinase 1 0.172
Foxe3 forkhead box E3 0.172
Pnliprp1 pancreatic lipase-related protein 1 0.171
Bbx bobby sox homolog (Drosophila) 0.170
Ppp1r3b protein phosphatase 1, regulatory (inhibitor) subunit 3B 0.168
Pou2f2 POU class 2 homeobox 2 0.168
Bmpr2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.168