The network for 'regulation of transcription from rna polymerase ii promoter' in your query organism is displayed on the left, if relationships are supported by the integrated data. Moving any of the genes in that network will simultaneously update the homologs in the networks displayed to the right (if they exist). Additionally, hovering over any nodes will highlight the identified functionally similar homologs in the other networks. Last, the bar above the networks allows you to remove/add additional organisms. Simily drag and drop the organism names in the desired order.

Multiple Organisms

regulation of transcription from rna polymerase ii promoter

Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.

Saccharomyces cerevisiae
Name Description Probability Func Analog Organism
HHT1 Hht1p 1.000
SIN3 Sin3p 1.000
SPT8 Spt8p 0.999
GCN5 Gcn5p 0.999
GAL11 Gal11p 0.999
RGR1 Rgr1p 0.998
MED1 Med1p 0.998
HOG1 Hog1p 0.998
RPD3 Rpd3p 0.996
SPT16 Spt16p 0.995
MED2 Med2p 0.994
RIM101 Rim101p 0.993
ADA2 Ada2p 0.991
SRB4 Srb4p 0.991
ROX3 Rox3p 0.987
TAF5 Taf5p 0.986
TAF14 Taf14p 0.986
GLC7 Glc7p 0.986
SIN4 Sin4p 0.984
RTF1 Rtf1p 0.982
FKH2 Fkh2p 0.981
RPN4 Rpn4p 0.981
CHD1 Chd1p 0.980
GLN3 Gln3p 0.980
TRA1 Tra1p 0.979
SNF5 Snf5p 0.978
AFT1 Aft1p 0.977
SWI6 Swi6p 0.975
SPT15 Spt15p 0.974
SSN3 Ssn3p 0.974
TAF10 Taf10p 0.973
CSE2 Cse2p 0.967
PGD1 Pgd1p 0.966
MSN2 Msn2p 0.965
CYC8 Cyc8p 0.962
RAP1 Rap1p 0.954
HDA1 Hda1p 0.952
HTB1 Htb1p 0.950
KDX1 Kdx1p 0.949
SNF1 Snf1p 0.948
SPT5 Spt5p 0.948
CTR9 Ctr9p 0.947
TUP1 Tup1p 0.947
YAK1 Yak1p 0.946
HHF1 Hhf1p 0.940
URE2 Ure2p 0.935
SPT3 Spt3p 0.935
RPO21 Rpo21p 0.934
YTA7 Yta7p 0.934
SGF73 Sgf73p 0.934
SUM1 Sum1p 0.931
NRG1 Nrg1p 0.928
SET3 Set3p 0.925
RSC4 Rsc4p 0.925
SRB8 Srb8p 0.924
MET4 Met4p 0.922
ARG81 Arg81p 0.920
TAF12 Taf12p 0.919
SSN8 Ssn8p 0.917
RXT2 Rxt2p 0.914
HTB2 Htb2p 0.908
PAF1 Paf1p 0.903
GCR2 Gcr2p 0.901
TFG1 Tfg1p 0.901
NUT2 Nut2p 0.900
SSN2 Ssn2p 0.897
MED6 Med6p 0.895
SRB6 Srb6p 0.893
SAS3 Sas3p 0.886
HIR2 Hir2p 0.883
TAF9 Taf9p 0.883
SNF6 Snf6p 0.880
RPT6 Rpt6p 0.876
PHO23 Pho23p 0.875
HFI1 Hfi1p 0.871
MIG1 Mig1p 0.870
SPT20 Spt20p 0.870
FKH1 Fkh1p 0.869
UBP3 Ubp3p 0.869
ARP8 Arp8p 0.861
SRB5 Srb5p 0.860
CDC28 Cdc28p 0.860
FLO8 Flo8p 0.853
EAF3 Eaf3p 0.848
NUT1 Nut1p 0.847
HTA2 Hta2p 0.847
RCO1 Rco1p 0.844
SWI4 Swi4p 0.841
SOH1 Soh1p 0.840
HHT2 Hht2p 0.840
CDC73 Cdc73p 0.828
SWI1 Swi1p 0.826
HTZ1 Htz1p 0.825
IXR1 Ixr1p 0.820
DST1 Dst1p 0.820
MOT1 Mot1p 0.815
HTA1 Hta1p 0.814
TFB2 Tfb2p 0.813
NHP6A Nhp6ap 0.813
SET2 Set2p 0.809
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Caenorhabditis elegans
Name Description Probability Func Analog Organism
egl-18 Protein EGL-18 0.998
pha-4 Protein PHA-4 0.993
elt-6 Protein ELT-6 0.981
zip-7 Protein ZIP-7 0.955
nhr-49 Protein NHR-49 0.928
vab-3 Protein VAB-3 0.902
nhr-67 Protein NHR-67 0.889
egl-13 Protein EGL-13 0.885
lin-35 Protein LIN-35 0.876
hbl-1 Protein HBL-1 0.874
his-16 Protein HIS-16 0.850
unc-73 Protein UNC-73 0.810
lin-17 Protein LIN-17 0.806
lin-36 Protein LIN-36 0.803
fkh-2 Protein FKH-2 0.803
hlh-2 Protein HLH-2 0.801
nhr-2 Protein NHR-2 0.786
eya-1 Protein EYA-1 0.782
gei-4 Protein GEI-4 0.780
egl-46 Protein EGL-46 0.765
unc-42 Protein UNC-42 0.760
unc-62 Protein UNC-62 0.731
his-1 Protein HIS-1 0.725
ceh-20 Protein CEH-20 0.715
his-64 Protein HIS-64 0.672
daf-14 Protein DAF-14 0.641
nhr-34 Protein NHR-34 0.635
F39B2.1 Protein F39B2.1 0.631
his-61 Protein HIS-61 0.607
tax-4 Protein TAX-4 0.593
CELE_Y106G6H.6 Protein Y106G6H.6 0.589
hlh-1 Protein HLH-1 0.585
mab-5 Protein MAB-5 0.571
mdt-8 Protein MDT-8 0.549
ten-1 Protein TEN-1 0.532
egl-15 Protein EGL-15 0.531
mat-3 Protein MAT-3 0.530
hcp-3 Protein HCP-3 0.524
ceh-16 Protein CEH-16 0.521
egl-44 Protein EGL-44 0.514
vab-1 Protein VAB-1 0.511
bet-1 Protein BET-1 0.501
lin-29 Protein LIN-29 0.500
lin-11 Protein LIN-11 0.495
set-2 Protein SET-2 0.491
hif-1 Protein HIF-1 0.484
ceh-27 Protein CEH-27 0.482
unc-37 Protein UNC-37 0.466
nhr-25 Protein NHR-25 0.456
pry-1 Protein PRY-1 0.449
attf-2 Protein ATTF-2 0.447
daf-4 Protein DAF-4 0.444
frm-7 Protein FRM-7 0.444
Y102A11A.6 Protein Y102A11A.6 0.434
rad-26 Protein RAD-26 0.403
flh-2 Protein FLH-2 0.402
ztf-2 Protein ZTF-2 0.394
his-5 Protein HIS-5 0.391
dma-1 Protein DMA-1 0.389
cnd-1 Protein CND-1 0.379
daf-11 Protein DAF-11 0.377
hda-2 Protein HDA-2 0.371
his-42 Protein HIS-42 0.368
unc-43 Protein UNC-43 0.364
hnd-1 Protein HND-1 0.356
rskn-2 Protein RSKN-2 0.356
lin-1 Protein LIN-1 0.356
flt-1 Protein FLT-1 0.356
ceh-13 Protein CEH-13 0.351
sur-2 Protein SUR-2 0.344
eri-1 Protein ERI-1 0.343
capg-2 Protein CAPG-2 0.341
daf-1 Protein DAF-1 0.341
his-50 Protein HIS-50 0.340
F53F10.2 Protein F53F10.2 0.338
C46F11.4 Protein C46F11.4 0.336
egl-5 Protein EGL-5 0.329
his-48 Protein HIS-48 0.326
akt-2 Protein AKT-2 0.326
mep-1 Protein MEP-1 0.324
his-68 Protein HIS-68 0.322
lag-1 Protein LAG-1 0.322
F33H1.4 Protein F33H1.4 0.321
abi-1 Protein ABI-1 0.318
F28B3.1 Protein F28B3.1 0.316
sas-5 Protein SAS-5 0.314
brp-1 Protein BRP-1 0.313
sna-2 Protein SNA-2 0.313
pqn-44 Protein PQN-44 0.309
syg-2 Protein SYG-2 0.308
qua-1 Protein QUA-1 0.297
F09F9.4 Protein F09F9.4 0.289
ceh-18 Protein CEH-18 0.282
set-1 Protein SET-1 0.276
cam-1 Protein CAM-1 0.275
his-51 Protein HIS-51 0.274
his-29 Protein HIS-29 0.273
ceh-38 Protein CEH-38 0.272
cfim-2 Protein CFIM-2 0.269
T09B4.5 Protein T09B4.5 0.266
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Danio rerio
Name Description Probability Func Analog Organism
notch1a notch homolog 1a 0.998
shha sonic hedgehog a 0.996
hand2 heart and neural crest derivatives expressed transcript 2 0.996
ndr2 nodal-related 2 0.991
chd chordin 0.985
ntla no tail a 0.974
foxa3 forkhead box A3 0.972
foxa2 forkhead box A2 0.971
spry4 sprouty (Drosophila) homolog 4 0.968
hoxb1b homeo box B1b 0.963
bmp2b bone morphogenetic protein 2b 0.961
otpb orthopedia homolog b 0.958
bmp4 bone morphogenetic protein 4 0.957
pitx3 paired-like homeodomain transcription factor 3 0.947
lhx1a LIM homeobox 1a 0.944
hnf1ba HNF1 homeobox Ba 0.942
mll myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) 0.939
lft1 lefty1 0.930
zic2a zic family member 2 (odd-paired homolog, Drosophila), a 0.926
myod1 myogenic differentiation 1 0.900
runx2b runt-related transcription factor 2b 0.889
vent ventral expressed homeobox 0.872
tll1 tolloid-like 1 0.867
hoxc4a homeo box C4a 0.861
flh floating head 0.855
cdx4 caudal type homeo box transcription factor 4 0.836
fgfr4 fibroblast growth factor receptor 4 0.834
etv5b ets variant 5b 0.832
twist3 twist3 0.829
nkx2.2a NK2 transcription factor related 2a 0.829
tbx16 T-box gene 16 0.823
dlx2a distal-less homeobox gene 2a 0.817
eya1 eyes absent homolog 1 0.812
jag2 jagged 2 0.811
lhx5 LIM homeobox 5 0.811
bmpr1aa bone morphogenetic protein receptor, type 1aa 0.808
hoxa11a homeo box A11a 0.791
gata1a GATA binding protein 1a 0.789
pcdh18b protocadherin 18b 0.778
gata6 GATA-binding protein 6 0.772
gsc goosecoid 0.765
ins preproinsulin 0.763
sox19a SRY-box containing gene 19a 0.751
prox1 prospero-related homeobox gene 1 0.751
dnmt7 DNA (cytosine-5-)-methyltransferase 7 0.742
crabp2a cellular retinoic acid binding protein 2, a 0.741
neo1 neogenin 1 0.737
gbx2 gastrulation brain homeo box 2 0.728
irx7 iroquois homeobox protein 7 0.717
dkk1b dickkopf 1b 0.714
foxi1 forkhead box I1 0.694
dusp6 dual specificity phosphatase 6 0.677
fgf3 fibroblast growth factor 3 0.675
tbx6 T-box gene 6 0.669
twist1a twist1a 0.669
tal1 T-cell acute lymphocytic leukemia 1 0.668
wt1a wilms tumor 1a 0.664
epha4a eph receptor A4a 0.658
snai1b snail homolog 1b (Drosophila) 0.650
lef1 lymphocyte enhancer binding factor 1 0.637
junb jun B proto-oncogene 0.631
pkd2 polycystic kidney disease 2 0.623
crestin crestin 0.615
klf4 Kruppel-like factor 4 0.609
nkx2.1b NK2 homeobox 1b 0.607
sox32 SRY-box containing gene 32 0.606
spaw southpaw 0.605
fzd7a frizzled homolog 7a 0.600
six4b sine oculis homeobox homolog 4b 0.600
osr1 odd-skipped related 1 (Drosophila) 0.594
ptf1a pancreas specific transcription factor, 1a 0.588
cebpb CCAAT/enhancer binding protein (C/EBP), beta 0.587
eomesa eomesodermin homolog a 0.584
atoh1b atonal homolog 1b 0.579
hoxa9a homeo box A9a 0.578
notch3 notch homolog 3 0.578
nog1 noggin 1 0.577
gbx1 gastrulation brain homeobox 1 0.576
raraa retinoic acid receptor, alpha a 0.566
hoxc6a homeo box C6a 0.564
fgf8a fibroblast growth factor 8 a 0.560
evx1 even-skipped homeobox 1 0.558
mab21l2 mab-21-like 2 0.553
meis3 myeloid ecotropic viral integration site 3 0.551
ascl1a achaete-scute complex-like 1a (Drosophila) 0.550
spns2 spinster homolog 2 (Drosophila) 0.550
ctsl1b cathepsin L, 1 b 0.549
fezf2 FEZ family zinc finger 2 0.548
isl1 islet1 0.545
gli1 GLI-Kruppel family member 1 0.543
hoxb2a homeo box B2a 0.542
sox17 SRY-box containing gene 17 0.542
gata4 GATA-binding protein 4 0.540
hoxd11a homeo box D11a 0.538
nrg2a neuregulin 2a 0.537
cdh1 cadherin 1, epithelial 0.531
traf4a tnf receptor-associated factor 4a 0.527
plagl2 pleiomorphic adenoma gene-like 2 0.521
gata2a GATA-binding protein 2a 0.508
tfap2b transcription factor AP-2 beta 0.507
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Drosophila melanogaster
Name Description Probability Func Analog Organism
ci cubitus interruptus 1.000
Ubx Ultrabithorax 1.000
EcR Ecdysone receptor 0.999
pan pangolin 0.999
sd scalloped 0.998
MED15 Mediator complex subunit 15 0.998
Dll Distal-less 0.996
hep hemipterous 0.995
Pc Polycomb 0.995
Abd-B Abdominal B 0.995
Ras85D Ras oncogene at 85D 0.994
salm spalt major 0.994
dom domino 0.993
shn schnurri 0.993
Snr1 Snf5-related 1 0.992
slp1 sloppy paired 1 0.992
eyg eyegone 0.991
Sin3A CG8815 gene product from transcript CG8815-RC 0.990
gt giant 0.990
hth homothorax 0.989
Su(H) Suppressor of Hairless 0.989
Pp2B-14D Protein phosphatase 2B at 14D 0.986
so sine oculis 0.986
gbb glass bottom boat 0.986
E(spl) Enhancer of split 0.984
Mad Mothers against dpp 0.984
CkIIalpha Casein kinase II alpha subunit 0.984
BRWD3 CG31132 gene product from transcript CG31132-RA 0.984
nub nubbin 0.984
dpp decapentaplegic 0.984
brm brahma 0.983
lola longitudinals lacking 0.982
Antp Antennapedia 0.981
wg wingless 0.977
Akt1 CG4006 gene product from transcript CG4006-RA 0.977
HLHm7 E(spl) region transcript m7 0.976
slmb supernumerary limbs 0.974
dco discs overgrown 0.973
en engrailed 0.972
mor moira 0.971
Axn Axin 0.969
cnc cap-n-collar 0.969
kay kayak 0.969
rho rhomboid 0.968
Egfr Epidermal growth factor receptor 0.968
rpr reaper 0.967
kis kismet 0.966
InR Insulin-like receptor 0.963
exd extradenticle 0.958
Doc2 Dorsocross2 0.954
Ser Serrate 0.952
Eps-15 Epidermal growth factor receptor pathway substrate clone 15 0.952
abd-A abdominal A 0.952
ara araucan 0.950
Pcl Polycomblike 0.949
ey eyeless 0.946
al aristaless 0.945
Lam Lamin 0.945
Sce Sex combs extra 0.944
foxo forkhead box, sub-group O 0.943
kto kohtalo 0.940
nkd naked cuticle 0.940
ftz-f1 ftz transcription factor 1 0.939
N Notch 0.938
Pka-C1 cAMP-dependent protein kinase 1 0.938
gpp grappa 0.936
Rpd3 CG7471 gene product from transcript CG7471-RA 0.929
sgg shaggy 0.926
run runt 0.925
Optix CG18455 gene product from transcript CG18455-RA 0.924
esg escargot 0.923
opa odd paired 0.922
toy twin of eyeless 0.920
heph hephaestus 0.920
Tollo CG6890 gene product from transcript CG6890-RA 0.919
klu klumpfuss 0.919
Chro Chromator 0.919
kn knot 0.915
ush u-shaped 0.914
grn grain 0.906
tin tinman 0.904
trx trithorax 0.904
csw corkscrew 0.900
p38b CG7393 gene product from transcript CG7393-RA 0.900
tws twins 0.898
aux auxillin 0.895
dsh dishevelled 0.893
hb hunchback 0.891
dac dachshund 0.887
Dad Daughters against dpp 0.887
da daughterless 0.884
prd paired 0.884
dsx doublesex 0.882
brk brinker 0.880
Taf1 TBP-associated factor 1 0.877
sti sticky 0.876
MED17 Mediator complex subunit 17 0.876
ab abrupt 0.875
Gug Grunge 0.874
btd buttonhead 0.874
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Homo sapiens
Name Description Probability Func Analog Organism
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Mus musculus
Name Description Probability Func Analog Organism
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Rattus norvegicus
Name Description Probability Func Analog Organism
Jun Jun oncogene 0.960
Dusp1 dual specificity phosphatase 1 0.927
Ppp1r15a protein phosphatase 1, regulatory (inhibitor) subunit 15A 0.886
Btg2 BTG family, member 2 0.878
Junb jun B proto-oncogene 0.876
Cebpb CCAAT/enhancer binding protein (C/EBP), beta 0.831
Rara retinoic acid receptor, alpha 0.812
Tgfbr2 transforming growth factor, beta receptor II 0.776
Fos FBJ osteosarcoma oncogene 0.775
Zfp36 zinc finger protein 36 0.757
Nr4a3 nuclear receptor subfamily 4, group A, member 3 0.735
Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 0.685
Nr4a1 nuclear receptor subfamily 4, group A, member 1 0.640
Wbp11 WW domain binding protein 11 0.605
Fgfr1 Fibroblast growth factor receptor 1 0.599
Nfib nuclear factor I/B 0.590
Ciita class II, major histocompatibility complex, transactivator 0.589
Hes1 hairy and enhancer of split 1 (Drosophila) 0.558
Dctn1 dynactin 1 0.555
Cebpa CCAAT/enhancer binding protein (C/EBP), alpha 0.537
Dbp D site of albumin promoter (albumin D-box) binding protein 0.533
Purb purine rich element binding protein B 0.514
Smad1 SMAD family member 1 0.501
Epor erythropoietin receptor 0.501
Tcfe2a transcription factor E2a 0.499
Ier2 immediate early response 2 0.494
Grin2b glutamate receptor, ionotropic, N-methyl D-aspartate 2B 0.479
Nr1d2 nuclear receptor subfamily 1, group D, member 2 0.478
Erbb4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 0.455
Adarb2 adenosine deaminase, RNA-specific, B2 0.436
Atf3 activating transcription factor 3 0.435
Hsd3b6 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6 0.431
Nr2f6 nuclear receptor subfamily 2, group F, member 6 0.423
Shox2 short stature homeobox 2 0.418
Cntfr ciliary neurotrophic factor receptor 0.416
Tceb3 transcription elongation factor B (SIII), polypeptide 3 0.410
Ahr aryl hydrocarbon receptor 0.406
Hivep2 human immunodeficiency virus type I enhancer binding protein 2 0.403
Dlg1 discs, large homolog 1 (Drosophila) 0.402
Umod uromodulin 0.395
Dnaja2 DnaJ (Hsp40) homolog, subfamily A, member 2 0.394
Aqp2 aquaporin 2 (collecting duct) 0.392
Psmb3 proteasome (prosome, macropain) subunit, beta type 3 0.383
Icam1 intercellular adhesion molecule 1 0.372
Met met proto-oncogene 0.365
Robo1 roundabout homolog 1 (Drosophila) 0.363
Synpo synaptopodin 0.360
Id1 inhibitor of DNA binding 1 0.359
Hoxb7 homeo box B7 0.358
Tp53 tumor protein p53 0.355
Klf13 Kruppel-like factor 13 0.355
Arf4 ADP-ribosylation factor 4 0.354
Foxe3 forkhead box E3 0.353
Mov10 Moloney leukemia virus 10 0.343
Bmp6 bone morphogenetic protein 6 0.343
Creb1 cAMP responsive element binding protein 1 0.333
Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta 0.333
Scaf1 SR-related CTD-associated factor 1 0.331
Smad6 SMAD family member 6 0.328
Clps colipase, pancreatic 0.323
Usf2 upstream transcription factor 2, c-fos interacting 0.322
Hdac2 histone deacetylase 2 0.322
Socs7 suppressor of cytokine signaling 7 0.319
Dll3 delta-like 3 (Drosophila) 0.314
Prph2 peripherin 2 0.312
Ifrd1 interferon-related developmental regulator 1 0.308
Arnt aryl hydrocarbon receptor nuclear translocator 0.308
Adcy5 adenylate cyclase 5 0.308
Egr1 early growth response 1 0.301
Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 0.295
Sp1 Sp1 transcription factor 0.295
Dusp6 dual specificity phosphatase 6 0.294
Chrna9 cholinergic receptor, nicotinic, alpha 9 0.293
Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 0.287
Igfbp5 insulin-like growth factor binding protein 5 0.280
Tcf4 transcription factor 4 0.279
Homer3 homer homolog 3 (Drosophila) 0.277
Mef2d myocyte enhancer factor 2D 0.277
Sox13 SRY (sex determining region Y)-box 13 0.277
Runx1 runt-related transcription factor 1 0.271
Ehmt2 euchromatic histone lysine N-methyltransferase 2 0.270
Mdfic MyoD family inhibitor domain containing 0.267
Ptprk protein tyrosine phosphatase, receptor type, K, extracellular region 0.265
Rest RE1-silencing transcription factor 0.265
Arhgap28 Rho GTPase activating protein 28 0.264
Barhl1 BarH-like homeobox 1 0.261
Mmp14 matrix metallopeptidase 14 (membrane-inserted) 0.261
Slc26a5 solute carrier family 26, member 5 (prestin) 0.256
Ngfr nerve growth factor receptor (TNFR superfamily, member 16) 0.255
Cand1 cullin-associated and neddylation-dissociated 1 0.253
Clock clock homolog (mouse) 0.252
Wnt2b wingless-type MMTV integration site family, member 2B 0.251
Bat3 HLA-B-associated transcript 3 0.251
Sebox SEBOX homeobox 0.250
Chd1 chromodomain helicase DNA binding protein 1 0.250
Ubtf upstream binding transcription factor, RNA polymerase I 0.246
Tceb2 transcription elongation factor B (SIII), polypeptide 2 0.246
Akt1 v-akt murine thymoma viral oncogene homolog 1 0.244
Trim47 tripartite motif-containing 47 0.243
Nr1d1 nuclear receptor subfamily 1, group D, member 1 0.243