Saccharomyces cerevisiae

21 known processes

RKM3 (YBR030W)

Rkm3p

RKM3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
rna methylation GO:0001510 39 0.392
macromolecule methylation GO:0043414 85 0.333
cell division GO:0051301 205 0.219
organophosphate metabolic process GO:0019637 597 0.179
single organism catabolic process GO:0044712 619 0.171
nucleoside phosphate metabolic process GO:0006753 458 0.114
regulation of cellular component organization GO:0051128 334 0.109
macromolecule catabolic process GO:0009057 383 0.102
negative regulation of macromolecule metabolic process GO:0010605 375 0.098
rna modification GO:0009451 99 0.091
trna methylation GO:0030488 21 0.087
modification dependent macromolecule catabolic process GO:0043632 203 0.078
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.076
carbohydrate metabolic process GO:0005975 252 0.075
meiotic cell cycle process GO:1903046 229 0.071
nucleotide metabolic process GO:0009117 453 0.071
lipid metabolic process GO:0006629 269 0.067
regulation of cell cycle GO:0051726 195 0.066
nucleobase containing small molecule metabolic process GO:0055086 491 0.064
cellular nitrogen compound catabolic process GO:0044270 494 0.063
nucleoside phosphate catabolic process GO:1901292 331 0.063
ribonucleoside triphosphate metabolic process GO:0009199 356 0.062
meiotic cell cycle GO:0051321 272 0.059
regulation of response to stimulus GO:0048583 157 0.059
nuclear rna surveillance GO:0071027 30 0.058
nucleobase containing compound catabolic process GO:0034655 479 0.056
trna catabolic process GO:0016078 16 0.055
nuclear ncrna surveillance GO:0071029 20 0.055
ribose phosphate metabolic process GO:0019693 384 0.054
cytokinesis GO:0000910 92 0.053
chromatin modification GO:0016568 200 0.052
cell differentiation GO:0030154 161 0.051
organophosphate catabolic process GO:0046434 338 0.050
ribonucleotide catabolic process GO:0009261 327 0.050
ribonucleoside metabolic process GO:0009119 389 0.050
ribonucleotide metabolic process GO:0009259 377 0.049
nucleoside monophosphate metabolic process GO:0009123 267 0.048
rrna catabolic process GO:0016075 31 0.047
translation GO:0006412 230 0.046
organonitrogen compound catabolic process GO:1901565 404 0.045
cellular carbohydrate metabolic process GO:0044262 135 0.045
response to starvation GO:0042594 96 0.045
regulation of nuclear division GO:0051783 103 0.044
heterocycle catabolic process GO:0046700 494 0.044
meiotic nuclear division GO:0007126 163 0.044
regulation of biological quality GO:0065008 391 0.044
chromatin organization GO:0006325 242 0.043
cellular response to external stimulus GO:0071496 150 0.043
carboxylic acid metabolic process GO:0019752 338 0.043
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.042
negative regulation of transcription dna templated GO:0045892 258 0.042
positive regulation of cellular component organization GO:0051130 116 0.042
purine ribonucleotide catabolic process GO:0009154 327 0.041
regulation of organelle organization GO:0033043 243 0.041
vesicle mediated transport GO:0016192 335 0.041
cellular response to chemical stimulus GO:0070887 315 0.040
mitotic cell cycle GO:0000278 306 0.040
glycerolipid metabolic process GO:0046486 108 0.040
mrna metabolic process GO:0016071 269 0.040
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.040
cellular response to nutrient levels GO:0031669 144 0.039
cell communication GO:0007154 345 0.039
nuclear polyadenylation dependent rrna catabolic process GO:0071035 18 0.038
nucleoside metabolic process GO:0009116 394 0.038
organelle fission GO:0048285 272 0.038
regulation of cell cycle process GO:0010564 150 0.038
proteolysis GO:0006508 268 0.037
protein catabolic process GO:0030163 221 0.037
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.037
purine nucleoside monophosphate metabolic process GO:0009126 262 0.037
purine nucleoside catabolic process GO:0006152 330 0.036
methylation GO:0032259 101 0.036
carbohydrate derivative catabolic process GO:1901136 339 0.036
regulation of signal transduction GO:0009966 114 0.035
establishment or maintenance of cell polarity GO:0007163 96 0.035
nuclear polyadenylation dependent trna catabolic process GO:0071038 16 0.035
nucleoside triphosphate metabolic process GO:0009141 364 0.035
regulation of meiosis GO:0040020 42 0.035
nucleoside triphosphate catabolic process GO:0009143 329 0.034
negative regulation of cellular metabolic process GO:0031324 407 0.034
nucleotide catabolic process GO:0009166 330 0.034
cellular developmental process GO:0048869 191 0.034
cellular lipid metabolic process GO:0044255 229 0.034
ribonucleoside triphosphate catabolic process GO:0009203 327 0.033
cell fate commitment GO:0045165 32 0.033
polyadenylation dependent rna catabolic process GO:0043633 22 0.033
rna polyadenylation GO:0043631 26 0.033
maintenance of location GO:0051235 66 0.033
purine nucleoside triphosphate metabolic process GO:0009144 356 0.032
purine ribonucleotide metabolic process GO:0009150 372 0.032
positive regulation of macromolecule metabolic process GO:0010604 394 0.032
purine ribonucleoside monophosphate metabolic process GO:0009167 262 0.032
endocytosis GO:0006897 90 0.032
glycosyl compound catabolic process GO:1901658 335 0.032
cytoskeleton dependent cytokinesis GO:0061640 65 0.031
negative regulation of gene expression GO:0010629 312 0.031
reproductive process GO:0022414 248 0.031
response to nutrient levels GO:0031667 150 0.031
carbohydrate derivative metabolic process GO:1901135 549 0.031
organonitrogen compound biosynthetic process GO:1901566 314 0.031
glycerophospholipid metabolic process GO:0006650 98 0.030
ncrna catabolic process GO:0034661 33 0.030
modification dependent protein catabolic process GO:0019941 181 0.030
peptidyl lysine modification GO:0018205 77 0.030
purine nucleotide metabolic process GO:0006163 376 0.029
mrna catabolic process GO:0006402 93 0.029
purine ribonucleoside metabolic process GO:0046128 380 0.029
cofactor metabolic process GO:0051186 126 0.029
cellular macromolecule catabolic process GO:0044265 363 0.029
purine ribonucleoside triphosphate catabolic process GO:0009207 327 0.028
nuclear polyadenylation dependent ncrna catabolic process GO:0071046 20 0.028
regulation of translation GO:0006417 89 0.028
covalent chromatin modification GO:0016569 119 0.028
organic cyclic compound catabolic process GO:1901361 499 0.028
purine nucleoside metabolic process GO:0042278 380 0.028
purine ribonucleoside catabolic process GO:0046130 330 0.028
single organism developmental process GO:0044767 258 0.028
developmental process GO:0032502 261 0.028
phospholipid metabolic process GO:0006644 125 0.027
establishment of cell polarity GO:0030010 64 0.027
fungal type cell wall organization or biogenesis GO:0071852 169 0.027
ncrna processing GO:0034470 330 0.027
purine nucleoside monophosphate catabolic process GO:0009128 224 0.027
regulation of signaling GO:0023051 119 0.027
ribosomal large subunit biogenesis GO:0042273 98 0.026
peroxisome organization GO:0007031 68 0.026
regulation of cell communication GO:0010646 124 0.025
purine containing compound metabolic process GO:0072521 400 0.025
polyadenylation dependent ncrna catabolic process GO:0043634 20 0.025
rrna metabolic process GO:0016072 244 0.025
cofactor biosynthetic process GO:0051188 80 0.025
aromatic compound catabolic process GO:0019439 491 0.024
cytokinetic process GO:0032506 78 0.024
protein complex biogenesis GO:0070271 314 0.024
fungal type cell wall organization GO:0031505 145 0.024
positive regulation of transcription dna templated GO:0045893 286 0.024
dna packaging GO:0006323 55 0.024
atp metabolic process GO:0046034 251 0.023
protein localization to organelle GO:0033365 337 0.023
negative regulation of cellular biosynthetic process GO:0031327 312 0.023
sexual reproduction GO:0019953 216 0.023
positive regulation of response to stimulus GO:0048584 37 0.023
purine nucleotide catabolic process GO:0006195 328 0.023
ribonucleoside catabolic process GO:0042454 332 0.023
regulation of intracellular signal transduction GO:1902531 78 0.022
negative regulation of cell division GO:0051782 66 0.022
mitotic cell cycle process GO:1903047 294 0.022
purine nucleoside triphosphate catabolic process GO:0009146 329 0.022
response to external stimulus GO:0009605 158 0.022
rrna methylation GO:0031167 13 0.022
endonucleolytic cleavage in its1 to separate ssu rrna from 5 8s rrna and lsu rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna GO:0000447 43 0.022
cellular protein complex assembly GO:0043623 209 0.021
cation transport GO:0006812 166 0.021
protein processing GO:0016485 64 0.021
purine containing compound catabolic process GO:0072523 332 0.021
negative regulation of nucleic acid templated transcription GO:1903507 260 0.021
autophagy GO:0006914 106 0.021
purine ribonucleoside triphosphate metabolic process GO:0009205 354 0.021
response to chemical GO:0042221 390 0.020
glucose metabolic process GO:0006006 65 0.020
nucleoside monophosphate catabolic process GO:0009125 224 0.020
ribonucleoside monophosphate catabolic process GO:0009158 224 0.020
positive regulation of biosynthetic process GO:0009891 336 0.020
purine ribonucleoside monophosphate catabolic process GO:0009169 224 0.020
proteolysis involved in cellular protein catabolic process GO:0051603 198 0.020
cellular protein catabolic process GO:0044257 213 0.020
cellular component disassembly GO:0022411 86 0.020
ubiquitin dependent protein catabolic process GO:0006511 181 0.020
snorna metabolic process GO:0016074 40 0.020
single organism cellular localization GO:1902580 375 0.019
cellular response to dna damage stimulus GO:0006974 287 0.019
positive regulation of translation GO:0045727 34 0.019
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 137 0.019
response to extracellular stimulus GO:0009991 156 0.019
anatomical structure morphogenesis GO:0009653 160 0.019
regulation of phosphate metabolic process GO:0019220 230 0.019
organic acid metabolic process GO:0006082 352 0.019
mitotic nuclear division GO:0007067 131 0.019
reproduction of a single celled organism GO:0032505 191 0.019
protein maturation GO:0051604 76 0.018
rrna processing GO:0006364 227 0.018
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.018
ribonucleoprotein complex assembly GO:0022618 143 0.018
rrna modification GO:0000154 19 0.018
protein complex assembly GO:0006461 302 0.018
regulation of mitotic cell cycle GO:0007346 107 0.018
nucleoside catabolic process GO:0009164 335 0.018
cellular homeostasis GO:0019725 138 0.018
signaling GO:0023052 208 0.018
cell wall organization GO:0071555 146 0.018
gtp metabolic process GO:0046039 107 0.018
cellular protein complex disassembly GO:0043624 42 0.018
reproductive process in single celled organism GO:0022413 145 0.018
atp catabolic process GO:0006200 224 0.018
cytokinesis site selection GO:0007105 40 0.018
negative regulation of cell cycle GO:0045786 91 0.018
internal protein amino acid acetylation GO:0006475 52 0.018
cytoplasmic translation GO:0002181 65 0.017
response to temperature stimulus GO:0009266 74 0.017
nuclear division GO:0000280 263 0.017
macroautophagy GO:0016236 55 0.017
positive regulation of rna metabolic process GO:0051254 294 0.017
negative regulation of transcription from rna polymerase ii promoter GO:0000122 137 0.017
single organism signaling GO:0044700 208 0.017
positive regulation of nucleic acid templated transcription GO:1903508 286 0.017
regulation of gtp catabolic process GO:0033124 84 0.017
rna phosphodiester bond hydrolysis GO:0090501 112 0.017
positive regulation of phosphate metabolic process GO:0045937 147 0.017
organic hydroxy compound metabolic process GO:1901615 125 0.017
single organism membrane organization GO:0044802 275 0.017
regulation of response to stress GO:0080134 57 0.017
dna replication GO:0006260 147 0.017
lipid localization GO:0010876 60 0.016
regulation of phosphorus metabolic process GO:0051174 230 0.016
single organism reproductive process GO:0044702 159 0.016
rna surveillance GO:0071025 30 0.016
positive regulation of gene expression GO:0010628 321 0.016
positive regulation of cellular protein metabolic process GO:0032270 89 0.016
response to heat GO:0009408 69 0.016
response to abiotic stimulus GO:0009628 159 0.016
snorna processing GO:0043144 34 0.016
positive regulation of cell death GO:0010942 3 0.016
cellular response to extracellular stimulus GO:0031668 150 0.016
cellular response to organic substance GO:0071310 159 0.016
intracellular signal transduction GO:0035556 112 0.016
transcription elongation from rna polymerase ii promoter GO:0006368 81 0.016
response to uv GO:0009411 4 0.016
cytoskeleton organization GO:0007010 230 0.015
positive regulation of protein metabolic process GO:0051247 93 0.015
cellular response to starvation GO:0009267 90 0.015
protein dna complex subunit organization GO:0071824 153 0.015
negative regulation of biosynthetic process GO:0009890 312 0.015
protein alkylation GO:0008213 48 0.015
single organism carbohydrate metabolic process GO:0044723 237 0.015
conjugation GO:0000746 107 0.015
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.015
anatomical structure development GO:0048856 160 0.015
anion transport GO:0006820 145 0.015
cellular modified amino acid metabolic process GO:0006575 51 0.015
cut catabolic process GO:0071034 12 0.015
negative regulation of rna metabolic process GO:0051253 262 0.015
positive regulation of cellular biosynthetic process GO:0031328 336 0.015
cellular response to oxidative stress GO:0034599 94 0.015
cellular amide metabolic process GO:0043603 59 0.014
nucleic acid phosphodiester bond hydrolysis GO:0090305 194 0.014
reciprocal meiotic recombination GO:0007131 54 0.014
protein targeting GO:0006605 272 0.014
response to organic substance GO:0010033 182 0.014
monocarboxylic acid metabolic process GO:0032787 122 0.014
regulation of protein metabolic process GO:0051246 237 0.014
rna phosphodiester bond hydrolysis endonucleolytic GO:0090502 79 0.014
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.014
maturation of ssu rrna GO:0030490 105 0.014
cell wall organization or biogenesis GO:0071554 190 0.014
negative regulation of organelle organization GO:0010639 103 0.014
phospholipid biosynthetic process GO:0008654 89 0.014
nucleosome organization GO:0034728 63 0.014
oxoacid metabolic process GO:0043436 351 0.014
regulation of cytoskeleton organization GO:0051493 63 0.014
chromatin assembly GO:0031497 35 0.013
external encapsulating structure organization GO:0045229 146 0.013
dephosphorylation GO:0016311 127 0.013
organophosphate biosynthetic process GO:0090407 182 0.013
internal peptidyl lysine acetylation GO:0018393 52 0.013
regulation of dna replication GO:0006275 51 0.013
regulation of gtpase activity GO:0043087 84 0.013
positive regulation of molecular function GO:0044093 185 0.013
sexual sporulation GO:0034293 113 0.013
positive regulation of catabolic process GO:0009896 135 0.013
endomembrane system organization GO:0010256 74 0.013
ribonucleoside monophosphate metabolic process GO:0009161 265 0.013
regulation of mitosis GO:0007088 65 0.013
regulation of molecular function GO:0065009 320 0.013
ncrna 3 end processing GO:0043628 44 0.013
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.013
rna localization GO:0006403 112 0.013
glycosyl compound metabolic process GO:1901657 398 0.013
protein dna complex assembly GO:0065004 105 0.013
guanosine containing compound catabolic process GO:1901069 109 0.012
regulation of hydrolase activity GO:0051336 133 0.012
establishment of organelle localization GO:0051656 96 0.012
mating type switching GO:0007533 28 0.012
organelle assembly GO:0070925 118 0.012
filamentous growth GO:0030447 124 0.012
multi organism reproductive process GO:0044703 216 0.012
negative regulation of mitotic cell cycle GO:0045930 63 0.012
organic acid biosynthetic process GO:0016053 152 0.012
replicative cell aging GO:0001302 46 0.012
negative regulation of nuclear division GO:0051784 62 0.012
nucleotide biosynthetic process GO:0009165 79 0.012
positive regulation of gtp catabolic process GO:0033126 80 0.012
peptidyl amino acid modification GO:0018193 116 0.012
regulation of transport GO:0051049 85 0.012
chromosome segregation GO:0007059 159 0.012
snrna metabolic process GO:0016073 25 0.012
amine metabolic process GO:0009308 51 0.012
guanosine containing compound metabolic process GO:1901068 111 0.012
positive regulation of nucleotide metabolic process GO:0045981 101 0.012
growth GO:0040007 157 0.012
regulation of catalytic activity GO:0050790 307 0.011
negative regulation of chromosome organization GO:2001251 39 0.011
chromatin silencing GO:0006342 147 0.011
regulation of gene silencing GO:0060968 41 0.011
endosomal transport GO:0016197 86 0.011
maturation of lsu rrna GO:0000470 39 0.011
positive regulation of apoptotic process GO:0043065 3 0.011
regulation of nucleotide metabolic process GO:0006140 110 0.011
nuclear transcribed mrna catabolic process GO:0000956 89 0.011
histone acetylation GO:0016573 51 0.011
organic anion transport GO:0015711 114 0.011
chromatin remodeling GO:0006338 80 0.011
positive regulation of rna biosynthetic process GO:1902680 286 0.011
er associated ubiquitin dependent protein catabolic process GO:0030433 46 0.011
polysaccharide metabolic process GO:0005976 60 0.011
carbohydrate biosynthetic process GO:0016051 82 0.011
cell aging GO:0007569 70 0.011
developmental growth GO:0048589 3 0.011
small gtpase mediated signal transduction GO:0007264 36 0.011
glycosyl compound biosynthetic process GO:1901659 42 0.011
positive regulation of intracellular transport GO:0032388 4 0.011
organelle localization GO:0051640 128 0.010
developmental process involved in reproduction GO:0003006 159 0.010
ion transport GO:0006811 274 0.010
proteasomal protein catabolic process GO:0010498 141 0.010
cellular amino acid metabolic process GO:0006520 225 0.010
regulation of dna metabolic process GO:0051052 100 0.010
protein complex disassembly GO:0043241 70 0.010
coenzyme metabolic process GO:0006732 104 0.010
maturation of lsu rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna GO:0000463 33 0.010
positive regulation of catalytic activity GO:0043085 178 0.010
peptidyl lysine acetylation GO:0018394 52 0.010
posttranscriptional regulation of gene expression GO:0010608 115 0.010
protein targeting to membrane GO:0006612 52 0.010
maintenance of location in cell GO:0051651 58 0.010
protein modification by small protein conjugation or removal GO:0070647 172 0.010
dicarboxylic acid metabolic process GO:0043648 20 0.010
regulation of catabolic process GO:0009894 199 0.010
histone modification GO:0016570 119 0.010
conjugation with cellular fusion GO:0000747 106 0.010
intracellular protein transport GO:0006886 319 0.010
trna metabolic process GO:0006399 151 0.010

RKM3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.012