Homo sapiens

14 known processes

RLIM

ring finger protein, LIM domain interacting

(Aliases: FLJ42887,RNF12,DKFZp686N06224,FLJ25923,NY-REN-43,FLJ45986,MGC15161,FLJ41093)

RLIM biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
somatic stem cell maintenance GO:0035019 4 0.902
protein modification by small protein conjugation GO:0032446 342 0.678
Human Mouse
chromatin modification GO:0016568 298 0.629
protein polyubiquitination GO:0000209 110 0.480
Human
protein ubiquitination GO:0016567 314 0.364
Human Mouse
covalent chromatin modification GO:0016569 254 0.333
chromatin organization GO:0006325 351 0.308
multicellular organismal homeostasis GO:0048871 67 0.226
protein k48 linked ubiquitination GO:0070936 38 0.211
negative regulation of erythrocyte differentiation GO:0045647 3 0.208
compound eye development GO:0048749 1 0.195
histone modification GO:0016570 251 0.177
vesicle mediated transport GO:0016192 371 0.153
tissue homeostasis GO:0001894 63 0.145
hair cycle GO:0042633 28 0.142
modification dependent protein catabolic process GO:0019941 209 0.141
Mouse
post embryonic development GO:0009791 2 0.130
proteolysis involved in cellular protein catabolic process GO:0051603 244 0.129
Mouse
histone ubiquitination GO:0016574 31 0.127
regulation of cell differentiation GO:0045595 393 0.126
protein oligomerization GO:0051259 173 0.123
cellular protein catabolic process GO:0044257 261 0.121
Mouse
ubiquitin dependent protein catabolic process GO:0006511 206 0.116
Mouse
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 156 0.115
cerebellum development GO:0021549 2 0.114
anatomical structure homeostasis GO:0060249 100 0.107
negative regulation of developmental process GO:0051093 247 0.096
modification dependent macromolecule catabolic process GO:0043632 212 0.085
Mouse
negative regulation of cell differentiation GO:0045596 171 0.076
negative regulation of immune system process GO:0002683 136 0.075
hindbrain development GO:0030902 3 0.073
anterior posterior axis specification GO:0009948 2 0.072
hemoglobin biosynthetic process GO:0042541 3 0.071
cell morphogenesis GO:0000902 296 0.071
protein autoubiquitination GO:0051865 37 0.070
protein monoubiquitination GO:0006513 39 0.069
histone monoubiquitination GO:0010390 20 0.066
protein maturation GO:0051604 233 0.065
protein k11 linked ubiquitination GO:0070979 24 0.065
phototransduction GO:0007602 3 0.063
cellular macromolecule catabolic process GO:0044265 380 0.063
Mouse
regulation of response to external stimulus GO:0032101 222 0.062
negative regulation of homeostatic process GO:0032845 59 0.058
tube development GO:0035295 125 0.058
proteasomal protein catabolic process GO:0010498 176 0.058
protein processing GO:0016485 226 0.058
epidermis development GO:0008544 59 0.054
endocytosis GO:0006897 159 0.051
cellular macromolecular complex assembly GO:0034622 324 0.051
cell development GO:0048468 328 0.051
metencephalon development GO:0022037 2 0.051
hemopoiesis GO:0030097 180 0.050
regulation of homeostatic process GO:0032844 121 0.049
cellular component morphogenesis GO:0032989 314 0.049
regulation of cell cycle GO:0051726 393 0.049
regulation of cellular component biogenesis GO:0044087 281 0.048
multicellular organismal aging GO:0010259 3 0.048
wnt signaling pathway GO:0016055 156 0.048
cell projection organization GO:0030030 252 0.047
protein catabolic process GO:0030163 325 0.047
Mouse
female gamete generation GO:0007292 2 0.046
neurological system process GO:0050877 163 0.046
nervous system development GO:0007399 293 0.046
canonical wnt signaling pathway GO:0060070 116 0.046
chemotaxis GO:0006935 157 0.045
negative regulation of catabolic process GO:0009895 104 0.045
oogenesis GO:0048477 2 0.044
regulation of proteolysis GO:0030162 293 0.044
stem cell differentiation GO:0048863 93 0.044
system process GO:0003008 349 0.044
regulation of protein maturation GO:1903317 150 0.042
negative regulation of protein metabolic process GO:0051248 391 0.041
cellular amino acid metabolic process GO:0006520 116 0.040
negative regulation of cellular catabolic process GO:0031330 83 0.040
regulation of hemoglobin biosynthetic process GO:0046984 1 0.040
peptidyl lysine modification GO:0018205 144 0.040
negative regulation of proteolysis GO:0045861 132 0.039
rna processing GO:0006396 255 0.039
phototransduction visible light GO:0007603 2 0.039
protein homooligomerization GO:0051260 100 0.038
amine metabolic process GO:0009308 44 0.038
determination of adult lifespan GO:0008340 2 0.037
rhodopsin mediated signaling pathway GO:0016056 1 0.037
negative regulation of protein maturation GO:1903318 142 0.037
negative regulation of cellular protein metabolic process GO:0032269 353 0.036
segmentation GO:0035282 4 0.036
skin development GO:0043588 76 0.036
mrna metabolic process GO:0016071 175 0.036
cell part morphogenesis GO:0032990 137 0.035
protein k63 linked ubiquitination GO:0070534 31 0.035
internal protein amino acid acetylation GO:0006475 101 0.035
regulation of protein processing GO:0070613 150 0.035
regulation of rhodopsin mediated signaling pathway GO:0022400 1 0.035
histone h3 acetylation GO:0043966 45 0.035
response to external biotic stimulus GO:0043207 261 0.034
neuron differentiation GO:0030182 138 0.033
regulation of protein complex assembly GO:0043254 147 0.033
negative regulation of organelle organization GO:0010639 126 0.033
negative regulation of phosphate metabolic process GO:0045936 267 0.033
hematopoietic or lymphoid organ development GO:0048534 186 0.031
taxis GO:0042330 157 0.031
response to oxygen containing compound GO:1901700 369 0.031
histone acetylation GO:0016573 93 0.031
isg15 protein conjugation GO:0032020 5 0.031
immune system development GO:0002520 195 0.031
epithelial structure maintenance GO:0010669 9 0.031
regulation of proteasomal protein catabolic process GO:0061136 87 0.031
negative regulation of protein processing GO:0010955 142 0.030
organelle assembly GO:0070925 176 0.030
regulation of protein catabolic process GO:0042176 155 0.030
response to biotic stimulus GO:0009607 276 0.029
protein acylation GO:0043543 138 0.029
positive regulation of programmed cell death GO:0043068 249 0.029
regulation of cellular amine metabolic process GO:0033238 11 0.029
negative regulation of catalytic activity GO:0043086 335 0.029
intracellular steroid hormone receptor signaling pathway GO:0030518 61 0.029
Human
molting cycle process GO:0022404 12 0.029
sensory organ development GO:0007423 52 0.029
cell morphogenesis involved in differentiation GO:0000904 144 0.029
protein ubiquitination involved in ubiquitin dependent protein catabolic process GO:0042787 37 0.029
response to radiation GO:0009314 151 0.028
detection of stimulus GO:0051606 85 0.028
negative regulation of programmed cell death GO:0043069 321 0.028
stem cell development GO:0048864 69 0.027
negative regulation of multicellular organismal process GO:0051241 317 0.027
positive regulation of cellular amino acid metabolic process GO:0045764 3 0.027
regulation of locomotion GO:0040012 329 0.027
negative regulation of cellular component organization GO:0051129 235 0.027
cellular response to dna damage stimulus GO:0006974 379 0.027
apoptotic signaling pathway GO:0097190 268 0.027
cell projection morphogenesis GO:0048858 129 0.026
interspecies interaction between organisms GO:0044419 156 0.026
biological adhesion GO:0022610 331 0.026
positive regulation of cell death GO:0010942 263 0.026
sensory perception of light stimulus GO:0050953 35 0.026
protein acetylation GO:0006473 116 0.026
neurogenesis GO:0022008 169 0.026
negative regulation of protein modification process GO:0031400 200 0.025
generation of neurons GO:0048699 152 0.025
neuron development GO:0048666 113 0.025
posttranscriptional regulation of gene expression GO:0010608 213 0.025
actin filament based process GO:0030029 224 0.025
regulation of cellular response to stress GO:0080135 244 0.024
immune response GO:0006955 307 0.024
positive regulation of organelle organization GO:0010638 195 0.024
mitotic cell cycle GO:0000278 326 0.024
hemoglobin metabolic process GO:0020027 3 0.024
innate immune response GO:0045087 178 0.024
stem cell maintenance GO:0019827 19 0.024
regulation of canonical wnt signaling pathway GO:0060828 88 0.023
cellular ketone metabolic process GO:0042180 80 0.023
cellular response to abiotic stimulus GO:0071214 117 0.023
cellular response to endogenous stimulus GO:0071495 336 0.023
regulation of proteasomal ubiquitin dependent protein catabolic process GO:0032434 71 0.023
cellular protein complex assembly GO:0043623 188 0.023
anatomical structure formation involved in morphogenesis GO:0048646 284 0.023
regulation of protein ubiquitination GO:0031396 95 0.023
regulation of kinase activity GO:0043549 314 0.022
negative regulation of phosphorylation GO:0042326 174 0.022
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 91 0.022
negative regulation of hydrolase activity GO:0051346 182 0.022
regulation of protein modification by small protein conjugation or removal GO:1903320 107 0.022
regulation of mitotic cell cycle GO:0007346 189 0.022
regulation of cellular protein catabolic process GO:1903362 96 0.022
myeloid cell differentiation GO:0030099 117 0.022
positive regulation of hemoglobin biosynthetic process GO:0046985 1 0.022
positive regulation of cellular component biogenesis GO:0044089 158 0.021
regulation of protein transport GO:0051223 213 0.021
internal peptidyl lysine acetylation GO:0018393 97 0.021
positive regulation of apoptotic process GO:0043065 246 0.021
maintenance of location GO:0051235 112 0.021
mitotic cell cycle process GO:1903047 286 0.020
embryonic epithelial tube formation GO:0001838 4 0.020
positive regulation of protein ubiquitination GO:0031398 53 0.020
regulation of cell cycle process GO:0010564 266 0.020
mrna processing GO:0006397 133 0.020
memory GO:0007613 3 0.020
cell cycle phase transition GO:0044770 173 0.020
metal ion transport GO:0030001 272 0.020
regulation of cellular ketone metabolic process GO:0010565 50 0.019
positive regulation of cell adhesion GO:0045785 84 0.019
regulation of mitotic cell cycle phase transition GO:1901990 118 0.019
epithelium development GO:0060429 227 0.019
negative regulation of transcription from rna polymerase ii promoter GO:0000122 281 0.019
Mouse
spinal cord development GO:0021510 4 0.019
neural tube formation GO:0001841 3 0.019
blastoderm segmentation GO:0007350 2 0.018
response to virus GO:0009615 126 0.018
negative regulation of apoptotic process GO:0043066 316 0.018
head development GO:0060322 108 0.018
sensory perception GO:0007600 103 0.018
positive regulation of immune system process GO:0002684 283 0.018
chromosome segregation GO:0007059 114 0.018
immune effector process GO:0002252 159 0.018
molting cycle GO:0042303 28 0.018
neuron projection development GO:0031175 106 0.018
cell differentiation in hindbrain GO:0021533 1 0.018
hair follicle development GO:0001942 11 0.018
central nervous system development GO:0007417 123 0.018
locomotory behavior GO:0007626 1 0.018
regulation of erythrocyte differentiation GO:0045646 17 0.017
regulation of anatomical structure morphogenesis GO:0022603 286 0.017
eye development GO:0001654 42 0.017
myeloid cell homeostasis GO:0002262 34 0.017
mapk cascade GO:0000165 288 0.017
regulation of cytoskeleton organization GO:0051493 177 0.017
negative regulation of cell proliferation GO:0008285 228 0.017
symbiosis encompassing mutualism through parasitism GO:0044403 156 0.017
negative regulation of cell cycle GO:0045786 193 0.017
response to other organism GO:0051707 261 0.017
regulation of sequence specific dna binding transcription factor activity GO:0051090 211 0.017
Mouse
positive regulation of cellular catabolic process GO:0031331 284 0.017
positive regulation of viral entry into host cell GO:0046598 3 0.017
peptidyl lysine acetylation GO:0018394 101 0.017
response to abiotic stimulus GO:0009628 336 0.017
positive regulation of cellular component organization GO:0051130 376 0.017
positive regulation of cell proliferation GO:0008284 301 0.017
spermatid differentiation GO:0048515 4 0.016
sensory perception of sound GO:0007605 37 0.016
negative regulation of cell death GO:0060548 345 0.016
mitotic cell cycle phase transition GO:0044772 162 0.016
cellular amine metabolic process GO:0044106 41 0.016
nerve development GO:0021675 4 0.016
regulation of peptidase activity GO:0052547 180 0.016
regulation of cell development GO:0060284 161 0.016
rna catabolic process GO:0006401 71 0.016
positive regulation of wnt signaling pathway GO:0030177 54 0.016
negative regulation of protein catabolic process GO:0042177 59 0.016
transmembrane transport GO:0055085 399 0.016
actin cytoskeleton organization GO:0030036 207 0.016
purine ribonucleoside triphosphate catabolic process GO:0009207 391 0.016
glycoprotein metabolic process GO:0009100 110 0.016
regulation of microtubule cytoskeleton organization GO:0070507 61 0.016
regulation of g protein coupled receptor protein signaling pathway GO:0008277 35 0.016
neuron projection morphogenesis GO:0048812 50 0.015
regulation of cellular amino acid metabolic process GO:0006521 6 0.015
regulation of mapk cascade GO:0043408 262 0.015
detection of stimulus involved in sensory perception GO:0050906 43 0.015
embryo development GO:0009790 123 0.015
growth GO:0040007 202 0.015
ras protein signal transduction GO:0007265 73 0.015
purine nucleoside catabolic process GO:0006152 398 0.015
sensory perception of mechanical stimulus GO:0050954 37 0.015
purine ribonucleoside triphosphate metabolic process GO:0009205 411 0.015
negative regulation of cellular amine metabolic process GO:0033239 3 0.015
positive regulation of protein modification by small protein conjugation or removal GO:1903322 61 0.015
regulation of wnt signaling pathway GO:0030111 123 0.015
negative regulation of myeloid cell differentiation GO:0045638 42 0.015
lipid localization GO:0010876 106 0.015
regulation of cytokine production GO:0001817 232 0.015
negative regulation of apoptotic signaling pathway GO:2001234 97 0.015
meiosis i GO:0007127 4 0.015
positive regulation of immune response GO:0050778 159 0.014
regulation of cell adhesion GO:0030155 166 0.014
regulation of protein stability GO:0031647 87 0.014
positive regulation of cell differentiation GO:0045597 211 0.014
regulation of myeloid cell differentiation GO:0045637 81 0.014
carbohydrate derivative biosynthetic process GO:1901137 207 0.014
neuromuscular junction development GO:0007528 3 0.014
digestive tract development GO:0048565 75 0.014
phagocytosis GO:0006909 42 0.014
digestive system development GO:0055123 75 0.014
viral release from host cell GO:0019076 21 0.014
peripheral nervous system development GO:0007422 2 0.014
brain development GO:0007420 97 0.014
regulation of cell cycle phase transition GO:1901987 126 0.014
glycoprotein biosynthetic process GO:0009101 91 0.014
response to extracellular stimulus GO:0009991 85 0.014
response to lipid GO:0033993 206 0.014
cellular response to radiation GO:0071478 65 0.014
cerebellar cortex development GO:0021695 1 0.014
response to hormone GO:0009725 175 0.014
negative regulation of intracellular signal transduction GO:1902532 183 0.014
macromolecule glycosylation GO:0043413 63 0.014
g protein coupled receptor signaling pathway GO:0007186 207 0.014
meiotic chromosome segregation GO:0045132 4 0.014
cell adhesion GO:0007155 325 0.014
cell morphogenesis involved in neuron differentiation GO:0048667 44 0.014
defense response GO:0006952 315 0.014
regulation of apoptotic signaling pathway GO:2001233 175 0.014
response to fungus GO:0009620 4 0.014
regulation of endopeptidase activity GO:0052548 170 0.014
negative regulation of cellular protein catabolic process GO:1903363 38 0.013
negative regulation of calcium ion import GO:0090281 1 0.013
positive regulation of cytokine production GO:0001819 167 0.013
regeneration GO:0031099 4 0.013
positive regulation of catabolic process GO:0009896 310 0.013
purine containing compound catabolic process GO:0072523 411 0.013
protein localization to organelle GO:0033365 280 0.013
cation transport GO:0006812 331 0.013
microtubule based process GO:0007017 210 0.013
ribonucleoside triphosphate catabolic process GO:0009203 391 0.013
positive regulation of developmental process GO:0051094 314 0.013
positive regulation of phosphorylation GO:0042327 394 0.013
somitogenesis GO:0001756 2 0.013
i kappab kinase nf kappab signaling GO:0007249 166 0.013
digestive tract morphogenesis GO:0048546 56 0.013
mrna catabolic process GO:0006402 56 0.013
pattern specification process GO:0007389 43 0.013
erythrocyte differentiation GO:0030218 28 0.013
cellular response to oxygen containing compound GO:1901701 276 0.013
cytokine production GO:0001816 247 0.013
regulation of cellular component movement GO:0051270 334 0.013
glycosyl compound catabolic process GO:1901658 413 0.013
oocyte development GO:0048599 1 0.013
negative regulation of kinase activity GO:0033673 106 0.013
regulation of gene expression epigenetic GO:0040029 73 0.013
negative regulation of cell cycle phase transition GO:1901988 89 0.012
negative regulation of cellular amino acid metabolic process GO:0045763 2 0.012
organelle fission GO:0048285 149 0.012
associative learning GO:0008306 1 0.012
regulation of cysteine type endopeptidase activity GO:2000116 127 0.012
ion transmembrane transport GO:0034220 338 0.012
purine nucleoside triphosphate catabolic process GO:0009146 392 0.012
small gtpase mediated signal transduction GO:0007264 78 0.012
translation GO:0006412 132 0.012
regulation of immune effector process GO:0002697 91 0.012
carbohydrate metabolic process GO:0005975 207 0.012
gastrulation GO:0007369 51 0.012
intrinsic apoptotic signaling pathway GO:0097193 127 0.012
positive regulation of sequence specific dna binding transcription factor activity GO:0051091 131 0.012
positive regulation of transport GO:0051050 336 0.012
positive regulation of defense response GO:0031349 87 0.012
regulation of transferase activity GO:0051338 355 0.012
positive regulation of proteolysis GO:0045862 142 0.012
interleukin 2 secretion GO:0070970 3 0.012
cellular response to external stimulus GO:0071496 111 0.011
purine ribonucleoside metabolic process GO:0046128 437 0.011
regulation of dna templated transcription elongation GO:0032784 23 0.011
secretion by cell GO:0032940 226 0.011
primary neural tube formation GO:0014020 3 0.011
embryonic morphogenesis GO:0048598 85 0.011
positive regulation of cell cycle GO:0045787 140 0.011
defense response to virus GO:0051607 71 0.011
negative regulation of mitotic cell cycle GO:0045930 102 0.011
organophosphate catabolic process GO:0046434 430 0.011
cellular response to lipid GO:0071396 127 0.011
reactive oxygen species biosynthetic process GO:1903409 4 0.011
tube morphogenesis GO:0035239 95 0.011
cell cycle checkpoint GO:0000075 117 0.011
oocyte differentiation GO:0009994 2 0.011
regulation of protein localization GO:0032880 296 0.011
mitotic sister chromatid segregation GO:0000070 53 0.011
regulation of dna metabolic process GO:0051052 153 0.011
homeostasis of number of cells GO:0048872 40 0.011
positive regulation of locomotion GO:0040017 186 0.011
dna repair GO:0006281 198 0.011
regulation of immune response GO:0050776 201 0.011
regulation of actin filament based process GO:0032970 141 0.011
neural tube closure GO:0001843 3 0.011
organophosphate biosynthetic process GO:0090407 163 0.011
cell division GO:0051301 168 0.011
regulation of intrinsic apoptotic signaling pathway GO:2001242 72 0.011
negative regulation of transferase activity GO:0051348 124 0.011
regulation of secretion GO:0051046 194 0.011
ribonucleotide catabolic process GO:0009261 405 0.011
nuclear division GO:0000280 128 0.010
dna templated transcription elongation GO:0006354 25 0.010
macroautophagy GO:0016236 39 0.010
regulation of viral release from host cell GO:1902186 20 0.010
regulation of protein secretion GO:0050708 86 0.010
rna interference GO:0016246 4 0.010
regulation of organelle assembly GO:1902115 40 0.010
negative regulation of endopeptidase activity GO:0010951 84 0.010
negative regulation of protein phosphorylation GO:0001933 140 0.010
response to organic cyclic compound GO:0014070 204 0.010
regulation of cysteine type endopeptidase activity involved in apoptotic process GO:0043281 116 0.010
mitochondrion organization GO:0007005 156 0.010
regulation of reactive oxygen species biosynthetic process GO:1903426 3 0.010
protein localization to membrane GO:0072657 160 0.010
response to light stimulus GO:0009416 87 0.010
reactive oxygen species metabolic process GO:0072593 75 0.010
ribonucleoside catabolic process GO:0042454 406 0.010
ventral spinal cord development GO:0021517 1 0.010
atp metabolic process GO:0046034 176 0.010
response to axon injury GO:0048678 1 0.010
regulation of reactive oxygen species metabolic process GO:2000377 41 0.010

RLIM disease predictions

Disease DO term ID Size Probability Func Analog Org
sensory system disease DOID:0050155 203 0.020
nervous system disease DOID:863 431 0.020
retinal disease DOID:5679 118 0.017
retinal degeneration DOID:8466 89 0.017
eye and adnexa disease DOID:1492 150 0.017
eye disease DOID:5614 149 0.017
cancer DOID:162 167 0.014
Human
disease of cellular proliferation DOID:14566 174 0.014
Human
organ system cancer DOID:0050686 164 0.014
Human
central nervous system disease DOID:331 186 0.013
musculoskeletal system disease DOID:17 223 0.013
disease of metabolism DOID:0014667 295 0.010
inherited metabolic disorder DOID:655 242 0.010