Mus musculus

15 known processes

Rd3

retinal degeneration 3

(Aliases: rd3,rd-3,MGC117971,MGC151314,MGC151312,3322402L07Rik)

Rd3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
rhodopsin mediated signaling pathway GO:0016056 4 0.137
phototransduction GO:0007602 17 0.123
detection of light stimulus GO:0009583 25 0.100
ion transmembrane transport GO:0034220 361 0.097
detection of stimulus GO:0051606 84 0.074
photoreceptor cell development GO:0042461 40 0.067
camera type eye development GO:0043010 266 0.067
cation transmembrane transport GO:0098655 266 0.051
response to radiation GO:0009314 165 0.047
inorganic ion transmembrane transport GO:0098660 234 0.043
detection of external stimulus GO:0009581 61 0.043
sensory organ morphogenesis GO:0090596 242 0.042
eye photoreceptor cell differentiation GO:0001754 41 0.041
photoreceptor cell differentiation GO:0046530 52 0.040
retina development in camera type eye GO:0060041 119 0.040
negative regulation of molecular function GO:0044092 258 0.037
cilium morphogenesis GO:0060271 102 0.037
retinal cone cell development GO:0046549 8 0.036
eye photoreceptor cell development GO:0042462 31 0.036
detection of visible light GO:0009584 14 0.035
cellular response to light stimulus GO:0071482 19 0.034
cation transport GO:0006812 399 0.034
phototransduction visible light GO:0007603 6 0.034
microtubule based process GO:0007017 236 0.033
microtubule based movement GO:0007018 84 0.033
inorganic cation transmembrane transport GO:0098662 207 0.032
regionalization GO:0003002 337 0.032
sensory perception GO:0007600 245 0.031
transmembrane transport GO:0055085 412 0.030
neural precursor cell proliferation GO:0061351 121 0.029
detection of abiotic stimulus GO:0009582 60 0.028
regulation of neuron differentiation GO:0045664 281 0.028
forebrain development GO:0030900 302 0.028
regulation of cellular amino acid metabolic process GO:0006521 5 0.027
cellular amine metabolic process GO:0044106 44 0.026
regulation of cellular ketone metabolic process GO:0010565 66 0.025
regulation of peptide secretion GO:0002791 77 0.024
photoreceptor cell morphogenesis GO:0008594 3 0.023
positive regulation of cellular amino acid metabolic process GO:0045764 3 0.023
regulation of cellular component size GO:0032535 121 0.023
regulation of cellular amine metabolic process GO:0033238 20 0.023
amine metabolic process GO:0009308 45 0.023
locomotory behavior GO:0007626 195 0.023
negative regulation of neuron death GO:1901215 98 0.022
regulation of protein kinase activity GO:0045859 232 0.022
cellular ketone metabolic process GO:0042180 84 0.022
skin development GO:0043588 220 0.022
ear development GO:0043583 200 0.022
nitrogen compound transport GO:0071705 271 0.021
response to organonitrogen compound GO:0010243 246 0.021
regulation of mapk cascade GO:0043408 248 0.021
synaptic transmission GO:0007268 329 0.021
negative regulation of cellular amino acid metabolic process GO:0045763 0 0.021
positive regulation of nervous system development GO:0051962 221 0.020
cellular response to radiation GO:0071478 28 0.020
nucleobase containing small molecule metabolic process GO:0055086 352 0.020
pigmentation GO:0043473 71 0.020
fertilization GO:0009566 127 0.020
cilium assembly GO:0042384 81 0.019
response to light stimulus GO:0009416 135 0.019
response to acid chemical GO:0001101 111 0.019
cellular response to abiotic stimulus GO:0071214 56 0.019
developmental growth involved in morphogenesis GO:0060560 138 0.018
visual perception GO:0007601 52 0.018
spermatogenesis GO:0007283 284 0.018
ribose phosphate metabolic process GO:0019693 291 0.018
limb development GO:0060173 166 0.018
negative regulation of cellular amine metabolic process GO:0033239 1 0.017
cellular component assembly involved in morphogenesis GO:0010927 139 0.017
regulation of neuron death GO:1901214 134 0.017
adult behavior GO:0030534 135 0.017
morphogenesis of a branching structure GO:0001763 203 0.017
regulation of hormone levels GO:0010817 211 0.017
tissue homeostasis GO:0001894 115 0.017
cell type specific apoptotic process GO:0097285 268 0.017
positive regulation of cellular amine metabolic process GO:0033240 5 0.017
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 247 0.017
positive regulation of protein phosphorylation GO:0001934 242 0.017
neuron neuron synaptic transmission GO:0007270 69 0.017
defecation GO:0030421 1 0.016
organonitrogen compound biosynthetic process GO:1901566 192 0.016
g protein coupled receptor signaling pathway GO:0007186 243 0.016
mapk cascade GO:0000165 281 0.016
negative regulation of lymphocyte activation GO:0051250 91 0.016
retina morphogenesis in camera type eye GO:0060042 45 0.016
positive regulation of neuron projection development GO:0010976 79 0.016
regulation of secretion GO:0051046 274 0.015
protein modification by small protein conjugation or removal GO:0070647 207 0.015
cellular homeostasis GO:0019725 240 0.015
ribonucleotide metabolic process GO:0009259 291 0.015
developmental maturation GO:0021700 193 0.015
purine containing compound metabolic process GO:0072521 311 0.015
gland development GO:0048732 330 0.015
sensory perception of mechanical stimulus GO:0050954 107 0.015
epithelial tube morphogenesis GO:0060562 303 0.015
regulation of membrane potential GO:0042391 192 0.015
negative regulation of phosphate metabolic process GO:0045936 184 0.015
peptide secretion GO:0002790 114 0.015
negative regulation of cell development GO:0010721 169 0.015
neural retina development GO:0003407 41 0.015
cellular response to organonitrogen compound GO:0071417 145 0.015
positive regulation of mapk cascade GO:0043410 170 0.015
sensory perception of light stimulus GO:0050953 54 0.015
sensory perception of sound GO:0007605 97 0.015
positive regulation of neuron differentiation GO:0045666 141 0.014
stem cell proliferation GO:0072089 117 0.014
nerve development GO:0021675 67 0.014
regulation of transferase activity GO:0051338 263 0.014
cell maturation GO:0048469 127 0.014
oocyte axis specification GO:0007309 2 0.014
tube closure GO:0060606 91 0.014
nucleotide biosynthetic process GO:0009165 78 0.014
endocrine system development GO:0035270 98 0.014
adaptation of rhodopsin mediated signaling GO:0016062 2 0.014
regulation of cell projection organization GO:0031344 206 0.014
cerebellar granule cell precursor proliferation GO:0021930 10 0.013
nucleoside phosphate metabolic process GO:0006753 338 0.013
purine nucleotide metabolic process GO:0006163 302 0.013
organelle localization GO:0051640 179 0.013
embryonic placenta development GO:0001892 98 0.013
response to amino acid GO:0043200 37 0.013
protein oligomerization GO:0051259 67 0.013
appendage morphogenesis GO:0035107 149 0.013
protein targeting GO:0006605 143 0.013
positive regulation of cell development GO:0010720 237 0.013
cellular response to acid chemical GO:0071229 68 0.013
negative regulation of phosphorus metabolic process GO:0010563 184 0.013
protein processing GO:0016485 163 0.013
connective tissue development GO:0061448 179 0.013
learning or memory GO:0007611 148 0.013
regulation of proteolysis GO:0030162 164 0.012
organic anion transport GO:0015711 137 0.012
cellular amino acid metabolic process GO:0006520 103 0.012
sterol homeostasis GO:0055092 45 0.012
placenta development GO:0001890 140 0.012
anatomical structure homeostasis GO:0060249 145 0.012
cell proliferation in external granule layer GO:0021924 10 0.012
neurotransmitter transport GO:0006836 76 0.012
regulation of binding GO:0051098 111 0.012
morphogenesis of a branching epithelium GO:0061138 193 0.012
regulation of postsynaptic membrane potential GO:0060078 48 0.012
organophosphate biosynthetic process GO:0090407 122 0.012
monosaccharide metabolic process GO:0005996 106 0.012
regulation of hydrolase activity GO:0051336 246 0.012
adult locomotory behavior GO:0008344 91 0.012
multicellular organismal homeostasis GO:0048871 164 0.012
regulation of cell activation GO:0050865 289 0.012
midgut development GO:0007494 4 0.012
dephosphorylation GO:0016311 129 0.012
regulation of neuron projection development GO:0010975 169 0.012
negative regulation of cellular protein metabolic process GO:0032269 247 0.012
neural tube closure GO:0001843 90 0.012
skeletal system development GO:0001501 356 0.012
inner ear morphogenesis GO:0042472 101 0.012
developmental cell growth GO:0048588 84 0.012
divalent inorganic cation transport GO:0072511 178 0.012
morphogenesis of embryonic epithelium GO:0016331 159 0.012
retinal cone cell differentiation GO:0042670 8 0.011
mesenchyme development GO:0060485 152 0.011
cellular response to amino acid stimulus GO:0071230 29 0.011
establishment of organelle localization GO:0051656 122 0.011
purine ribonucleotide metabolic process GO:0009150 290 0.011
nucleotide metabolic process GO:0009117 332 0.011
dendrite development GO:0016358 115 0.011
lipid homeostasis GO:0055088 63 0.011
protein maturation GO:0051604 176 0.011
regulation of cell size GO:0008361 72 0.011
microtubule cytoskeleton organization GO:0000226 157 0.011
cellular divalent inorganic cation homeostasis GO:0072503 127 0.011
regulation of protein serine threonine kinase activity GO:0071900 157 0.011
positive regulation of cell projection organization GO:0031346 95 0.011
limb morphogenesis GO:0035108 149 0.011
cgmp metabolic process GO:0046068 20 0.011
monovalent inorganic cation homeostasis GO:0055067 33 0.011
cilium movement GO:0003341 28 0.011
peptide hormone secretion GO:0030072 109 0.011
negative regulation of nervous system development GO:0051961 156 0.011
divalent inorganic cation homeostasis GO:0072507 138 0.011
regulation of purine nucleotide metabolic process GO:1900542 169 0.011
negative regulation of apoptotic signaling pathway GO:2001234 104 0.011
regulation of neural precursor cell proliferation GO:2000177 70 0.010
negative regulation of purine nucleotide metabolic process GO:1900543 16 0.010
ras protein signal transduction GO:0007265 77 0.010
digestive tract morphogenesis GO:0048546 147 0.010
somatotropin secreting cell differentiation GO:0060126 4 0.010
positive regulation of protein modification process GO:0031401 299 0.010
regulation of reactive oxygen species metabolic process GO:2000377 40 0.010
sodium ion transmembrane transport GO:0035725 49 0.010
regulation of ossification GO:0030278 112 0.010
negative regulation of phosphorylation GO:0042326 166 0.010
b cell activation GO:0042113 161 0.010
cholesterol homeostasis GO:0042632 44 0.010
chemotaxis GO:0006935 247 0.010
palate development GO:0060021 76 0.010
regulation of cell cycle GO:0051726 281 0.010
regulation of mesenchymal cell proliferation involved in ureter development GO:0072199 3 0.010

Rd3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in mouse and predicted with the mouse functional network.

Disease DO term ID Size Probability Func Analog Org
sensory system disease DOID:0050155 0 0.549
disease of anatomical entity DOID:7 0 0.549
eye and adnexa disease DOID:1492 0 0.549
nervous system disease DOID:863 0 0.549
eye disease DOID:5614 0 0.229
retinal disease DOID:5679 0 0.094
retinal degeneration DOID:8466 0 0.062
retinitis pigmentosa DOID:10584 0 0.047