Rattus norvegicus

0 known processes

Limch1

LIM and calponin homology domains 1

(Aliases: RGD1305269)

Limch1 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
positive regulation of transport GO:0051050 245 0.084
regulation of cellular component organization GO:0051128 368 0.080
macromolecular complex assembly GO:0065003 273 0.073
neuron differentiation GO:0030182 368 0.065
positive regulation of multicellular organismal process GO:0051240 387 0.062
ion transmembrane transport GO:0034220 365 0.061
transmembrane transport GO:0055085 412 0.060
neuron development GO:0048666 286 0.058
protein complex subunit organization GO:0071822 302 0.056
neuron projection development GO:0031175 273 0.055
metal ion transport GO:0030001 289 0.055
cation transport GO:0006812 382 0.053
cell part morphogenesis GO:0032990 123 0.052
anatomical structure morphogenesis GO:0009653 298 0.051
regulation of multicellular organismal development GO:2000026 376 0.049
regulation of molecular function GO:0065009 398 0.049
regulation of ion transport GO:0043269 245 0.049
regulation of catalytic activity GO:0050790 304 0.048
macromolecular complex subunit organization GO:0043933 339 0.046
protein complex biogenesis GO:0070271 263 0.046
cell projection organization GO:0030030 302 0.044
cellular component assembly GO:0022607 360 0.043
intracellular signal transduction GO:0035556 314 0.042
monovalent inorganic cation transport GO:0015672 172 0.042
cellular chemical homeostasis GO:0055082 247 0.042
regulation of phosphate metabolic process GO:0019220 349 0.041
negative regulation of cellular metabolic process GO:0031324 281 0.041
regulation of rna biosynthetic process GO:2001141 381 0.040
macromolecule localization GO:0033036 252 0.040
positive regulation of phosphate metabolic process GO:0045937 262 0.039
cellular component biogenesis GO:0044085 368 0.039
negative regulation of metabolic process GO:0009892 331 0.039
cell projection morphogenesis GO:0048858 123 0.038
transcription dna templated GO:0006351 377 0.038
regulation of rna metabolic process GO:0051252 391 0.037
cellular homeostasis GO:0019725 252 0.037
negative regulation of macromolecule metabolic process GO:0010605 260 0.037
chemical homeostasis GO:0048878 292 0.037
regulation of cell differentiation GO:0045595 320 0.037
cellular ion homeostasis GO:0006873 184 0.037
positive regulation of cellular component organization GO:0051130 200 0.036
cell morphogenesis GO:0000902 142 0.036
regulation of intracellular signal transduction GO:1902531 218 0.036
catabolic process GO:0009056 351 0.036
cellular component movement GO:0006928 248 0.035
positive regulation of cell development GO:0010720 176 0.035
nucleobase containing small molecule metabolic process GO:0055086 316 0.035
protein complex assembly GO:0006461 263 0.035
carbohydrate derivative metabolic process GO:1901135 346 0.035
cellular cation homeostasis GO:0030003 180 0.034
negative regulation of multicellular organismal process GO:0051241 203 0.034
rna biosynthetic process GO:0032774 380 0.034
cell morphogenesis involved in neuron differentiation GO:0048667 106 0.034
regulation of transcription dna templated GO:0006355 374 0.034
organic cyclic compound catabolic process GO:1901361 175 0.033
positive regulation of nervous system development GO:0051962 178 0.033
cellular component morphogenesis GO:0032989 155 0.033
inorganic cation transmembrane transport GO:0098662 202 0.033
regulation of system process GO:0044057 208 0.033
regulation of signal transduction GO:0009966 318 0.032
positive regulation of developmental process GO:0051094 283 0.032
nucleic acid templated transcription GO:0097659 379 0.032
response to nutrient GO:0007584 248 0.031
organophosphate metabolic process GO:0019637 370 0.031
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.031
positive regulation of phosphorus metabolic process GO:0010562 262 0.030
aromatic compound catabolic process GO:0019439 168 0.030
regulation of nervous system development GO:0051960 264 0.030
regulation of cellular localization GO:0060341 263 0.030
purine nucleotide metabolic process GO:0006163 229 0.030
muscle system process GO:0003012 115 0.030
regulation of metal ion transport GO:0010959 118 0.029
regulation of membrane potential GO:0042391 110 0.029
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.029
cellular catabolic process GO:0044248 295 0.029
calcium ion homeostasis GO:0055074 162 0.029
cellular divalent inorganic cation homeostasis GO:0072503 162 0.029
organic substance catabolic process GO:1901575 316 0.028
regulation of phosphorus metabolic process GO:0051174 349 0.028
regulation of cellular protein metabolic process GO:0032268 267 0.028
metal ion homeostasis GO:0055065 186 0.028
divalent inorganic cation homeostasis GO:0072507 165 0.028
homeostatic process GO:0042592 331 0.028
rna metabolic process GO:0016070 406 0.028
nucleobase containing compound catabolic process GO:0034655 152 0.028
neuron projection morphogenesis GO:0048812 122 0.028
cellular calcium ion homeostasis GO:0006874 160 0.027
response to inorganic substance GO:0010035 377 0.027
single organism organelle organization GO:1902589 180 0.027
positive regulation of neurogenesis GO:0050769 165 0.027
response to extracellular stimulus GO:0009991 380 0.027
positive regulation of response to stimulus GO:0048584 285 0.027
single organism catabolic process GO:0044712 283 0.027
inorganic ion transmembrane transport GO:0098660 229 0.027
positive regulation of molecular function GO:0044093 230 0.027
nucleoside triphosphate metabolic process GO:0009141 144 0.026
ion homeostasis GO:0050801 212 0.026
positive regulation of cell differentiation GO:0045597 217 0.026
regulation of neuron projection development GO:0010975 161 0.026
cation transmembrane transport GO:0098655 263 0.026
organelle organization GO:0006996 266 0.026
cellular metal ion homeostasis GO:0006875 172 0.025
cation homeostasis GO:0055080 195 0.025
nucleoside phosphate metabolic process GO:0006753 283 0.025
cell morphogenesis involved in differentiation GO:0000904 119 0.025
heart morphogenesis GO:0003007 3 0.025
programmed cell death GO:0012501 392 0.024
heterocycle catabolic process GO:0046700 167 0.024
regulation of neuron differentiation GO:0045664 208 0.024
regulation of cell projection organization GO:0031344 175 0.024
tissue development GO:0009888 252 0.024
ribonucleotide metabolic process GO:0009259 231 0.023
purine ribonucleotide metabolic process GO:0009150 227 0.023
ribose phosphate metabolic process GO:0019693 235 0.023
defense response GO:0006952 194 0.023
cellular nitrogen compound catabolic process GO:0044270 163 0.023
protein oligomerization GO:0051259 191 0.022
regulation of hydrolase activity GO:0051336 143 0.022
regulation of cell development GO:0060284 263 0.022
protein phosphorylation GO:0006468 345 0.022
regulation of cell proliferation GO:0042127 359 0.022
positive regulation of signaling GO:0023056 270 0.022
regulation of protein metabolic process GO:0051246 289 0.022
nucleotide metabolic process GO:0009117 279 0.022
regulation of nucleotide metabolic process GO:0006140 117 0.022
neurological system process GO:0050877 219 0.022
cellular response to growth factor stimulus GO:0071363 162 0.022
apoptotic process GO:0006915 381 0.022
response to other organism GO:0051707 220 0.022
regulation of neurogenesis GO:0050767 247 0.022
single organism intracellular transport GO:1902582 166 0.022
blood circulation GO:0008015 183 0.022
central nervous system development GO:0007417 311 0.022
small gtpase mediated signal transduction GO:0007264 36 0.022
locomotion GO:0040011 237 0.021
potassium ion transport GO:0006813 97 0.021
positive regulation of neuron differentiation GO:0045666 126 0.021
response to growth factor GO:0070848 189 0.021
negative regulation of gene expression GO:0010629 199 0.021
cellular response to endogenous stimulus GO:0071495 377 0.021
response to decreased oxygen levels GO:0036293 237 0.021
positive regulation of cell communication GO:0010647 271 0.021
regulation of anatomical structure size GO:0090066 135 0.021
cellular response to stress GO:0033554 269 0.021
nucleoside metabolic process GO:0009116 179 0.021
cellular response to oxygen containing compound GO:1901701 386 0.021
cell motility GO:0048870 202 0.020
positive regulation of gene expression GO:0010628 244 0.020
response to nutrient levels GO:0031667 370 0.020
cellular ketone metabolic process GO:0042180 51 0.020
secretion GO:0046903 307 0.020
multicellular organismal reproductive process GO:0048609 233 0.020
regulation of transferase activity GO:0051338 123 0.020
head development GO:0060322 247 0.020
regulation of phosphorylation GO:0042325 248 0.020
negative regulation of cellular macromolecule biosynthetic process GO:2000113 141 0.020
blood vessel development GO:0001568 69 0.019
positive regulation of signal transduction GO:0009967 175 0.019
response to oxygen levels GO:0070482 265 0.019
negative regulation of response to stimulus GO:0048585 155 0.019
regulation of nucleic acid templated transcription GO:1903506 380 0.019
calcium ion transport GO:0006816 131 0.019
purine nucleoside metabolic process GO:0042278 169 0.019
organic acid metabolic process GO:0006082 292 0.019
regulation of catabolic process GO:0009894 113 0.019
oxoacid metabolic process GO:0043436 290 0.019
ras protein signal transduction GO:0007265 29 0.019
positive regulation of catalytic activity GO:0043085 184 0.019
organonitrogen compound catabolic process GO:1901565 179 0.018
regulation of response to stress GO:0080134 126 0.018
positive regulation of cytosolic calcium ion concentration GO:0007204 122 0.018
positive regulation of cellular biosynthetic process GO:0031328 295 0.018
cellular amino acid metabolic process GO:0006520 107 0.018
ribonucleotide catabolic process GO:0009261 136 0.018
regulation of anatomical structure morphogenesis GO:0022603 141 0.018
response to biotic stimulus GO:0009607 226 0.018
purine containing compound metabolic process GO:0072521 253 0.018
regulation of purine nucleotide metabolic process GO:1900542 115 0.018
purine nucleoside triphosphate metabolic process GO:0009144 141 0.018
ribonucleoside metabolic process GO:0009119 174 0.018
axis specification GO:0009798 4 0.018
secretion by cell GO:0032940 248 0.018
protein localization GO:0008104 191 0.018
localization of cell GO:0051674 202 0.018
response to vitamin GO:0033273 131 0.018
positive regulation of cell projection organization GO:0031346 111 0.018
positive regulation of biosynthetic process GO:0009891 319 0.018
purine ribonucleoside catabolic process GO:0046130 124 0.018
cell migration GO:0016477 197 0.018
response to external biotic stimulus GO:0043207 221 0.018
limb morphogenesis GO:0035108 4 0.018
response to hypoxia GO:0001666 231 0.017
regulation of cellular ketone metabolic process GO:0010565 27 0.017
intracellular transport GO:0046907 185 0.017
vesicle mediated transport GO:0016192 181 0.017
positive regulation of ion transport GO:0043270 94 0.017
transcription from rna polymerase ii promoter GO:0006366 252 0.017
cellular amine metabolic process GO:0044106 38 0.017
divalent inorganic cation transport GO:0072511 134 0.017
regulation of vesicle mediated transport GO:0060627 81 0.017
nucleoside triphosphate catabolic process GO:0009143 123 0.017
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.017
growth GO:0040007 165 0.017
regulation of cellular amino acid metabolic process GO:0006521 2 0.017
negative regulation of molecular function GO:0044092 133 0.016
divalent metal ion transport GO:0070838 132 0.016
ribonucleoside catabolic process GO:0042454 126 0.016
positive regulation of catabolic process GO:0009896 78 0.016
negative regulation of nucleobase containing compound metabolic process GO:0045934 153 0.016
g protein coupled receptor signaling pathway GO:0007186 242 0.016
positive regulation of cell proliferation GO:0008284 249 0.016
response to bacterium GO:0009617 200 0.016
regulation of homeostatic process GO:0032844 101 0.016
cardiovascular system development GO:0072358 134 0.016
cytoskeleton organization GO:0007010 111 0.016
carboxylic acid metabolic process GO:0019752 289 0.016
cytosolic calcium ion homeostasis GO:0051480 140 0.016
nucleotide catabolic process GO:0009166 139 0.016
aging GO:0007568 241 0.016
brain development GO:0007420 247 0.016
nitrogen compound transport GO:0071705 229 0.015
response to mechanical stimulus GO:0009612 134 0.015
purine ribonucleotide catabolic process GO:0009154 136 0.015
actin filament based process GO:0030029 86 0.015
nucleoside phosphate catabolic process GO:1901292 140 0.015
single organism cellular localization GO:1902580 102 0.015
cellular response to hormone stimulus GO:0032870 247 0.015
regulation of transmembrane transport GO:0034762 122 0.015
glycosyl compound metabolic process GO:1901657 182 0.015
anterior posterior pattern specification GO:0009952 1 0.015
cell cell signaling GO:0007267 335 0.015
regulation of secretion GO:0051046 224 0.015
cellular response to abiotic stimulus GO:0071214 85 0.015
reproduction GO:0000003 245 0.015
response to wounding GO:0009611 254 0.015
axon development GO:0061564 96 0.015
regulation of programmed cell death GO:0043067 341 0.015
positive regulation of neuron projection development GO:0010976 99 0.015
purine ribonucleoside metabolic process GO:0046128 168 0.015
amine metabolic process GO:0009308 38 0.015
purine containing compound catabolic process GO:0072523 138 0.015
regulation of protein modification process GO:0031399 194 0.015
response to oxidative stress GO:0006979 186 0.014
purine nucleoside catabolic process GO:0006152 124 0.014
action potential GO:0001508 54 0.014
regulation of muscle system process GO:0090257 79 0.014
regulation of apoptotic process GO:0042981 335 0.014
single organism reproductive process GO:0044702 297 0.014
cell cycle GO:0007049 101 0.014
response to peptide GO:1901652 292 0.014
ribonucleoside triphosphate metabolic process GO:0009199 141 0.014
ribonucleoside triphosphate catabolic process GO:0009203 122 0.014
cellular response to nitrogen compound GO:1901699 210 0.014
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.014
response to glucose GO:0009749 136 0.014
response to corticosteroid GO:0031960 235 0.014
embryonic pattern specification GO:0009880 1 0.014
single organism biosynthetic process GO:0044711 342 0.014
negative regulation of signaling GO:0023057 157 0.014
positive regulation of mapk cascade GO:0043410 92 0.014
striated muscle tissue development GO:0014706 58 0.014
positive regulation of hydrolase activity GO:0051345 86 0.014
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.014
purine ribonucleoside triphosphate metabolic process GO:0009205 140 0.014
reproductive process GO:0022414 372 0.014
circulatory system development GO:0072359 134 0.014
cellular response to organic cyclic compound GO:0071407 202 0.014
muscle contraction GO:0006936 88 0.014
regulation of cellular component movement GO:0051270 150 0.014
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.014
regulation of growth GO:0040008 105 0.014
multi organism reproductive process GO:0044703 262 0.014
positive regulation of protein metabolic process GO:0051247 178 0.014
positive regulation of intracellular signal transduction GO:1902533 138 0.014
regulation of blood circulation GO:1903522 110 0.013
cardiac muscle contraction GO:0060048 27 0.013
multicellular organismal signaling GO:0035637 44 0.013
purine nucleoside triphosphate catabolic process GO:0009146 122 0.013
purine nucleotide catabolic process GO:0006195 136 0.013
response to metal ion GO:0010038 253 0.013
intracellular protein transport GO:0006886 79 0.013
negative regulation of biosynthetic process GO:0009890 168 0.013
cytoplasmic transport GO:0016482 115 0.013
positive regulation of apoptotic process GO:0043065 154 0.013
response to carbohydrate GO:0009743 183 0.013
response to monosaccharide GO:0034284 159 0.013
muscle structure development GO:0061061 87 0.013
organophosphate catabolic process GO:0046434 148 0.013
negative regulation of cell communication GO:0010648 158 0.013
multicellular organism reproduction GO:0032504 233 0.013
organ morphogenesis GO:0009887 75 0.013
purine ribonucleoside triphosphate catabolic process GO:0009207 122 0.013
circulatory system process GO:0003013 183 0.013
cellular macromolecule localization GO:0070727 122 0.013
regeneration GO:0031099 163 0.013
negative regulation of protein metabolic process GO:0051248 114 0.013
negative regulation of cellular biosynthetic process GO:0031327 161 0.013
positive regulation of cell motility GO:2000147 97 0.012
cellular protein localization GO:0034613 122 0.012
positive regulation of transcription dna templated GO:0045893 197 0.012
regulation of heart contraction GO:0008016 48 0.012
carbohydrate derivative catabolic process GO:1901136 147 0.012
sequestering of calcium ion GO:0051208 8 0.012
response to cytokine GO:0034097 215 0.012
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.012
behavior GO:0007610 205 0.012
nucleoside catabolic process GO:0009164 126 0.012
regulation of kinase activity GO:0043549 117 0.012
positive regulation of cellular protein metabolic process GO:0032270 167 0.012
establishment of protein localization GO:0045184 141 0.012
synaptic transmission GO:0007268 235 0.012
heart process GO:0003015 57 0.012
proteolysis GO:0006508 175 0.012
regulation of protein phosphorylation GO:0001932 183 0.012
adult locomotory behavior GO:0008344 4 0.012
response to molecule of bacterial origin GO:0002237 194 0.012
neuronal action potential GO:0019228 35 0.012
regulation of ion transmembrane transport GO:0034765 121 0.012
regulation of cellular amine metabolic process GO:0033238 8 0.012
striated muscle contraction GO:0006941 44 0.012
regulation of hormone levels GO:0010817 187 0.012
guanosine containing compound metabolic process GO:1901068 74 0.012
regulation of secretion by cell GO:1903530 208 0.012
developmental growth GO:0048589 100 0.012
regulation of canonical wnt signaling pathway GO:0060828 4 0.012
eye morphogenesis GO:0048592 4 0.012
cell type specific apoptotic process GO:0097285 134 0.012
protein transport GO:0015031 132 0.012
regulation of purine nucleotide catabolic process GO:0033121 65 0.012
positive regulation of nucleoside metabolic process GO:0045979 55 0.012
regulation of ion transmembrane transporter activity GO:0032412 48 0.012
maintenance of location GO:0051235 17 0.011
regulation of cell morphogenesis GO:0022604 77 0.011
anion transport GO:0006820 178 0.011
negative regulation of rna metabolic process GO:0051253 123 0.011
negative regulation of developmental process GO:0051093 125 0.011
positive regulation of nucleotide metabolic process GO:0045981 91 0.011
positive regulation of rna metabolic process GO:0051254 203 0.011
embryo development GO:0009790 49 0.011
inflammatory response GO:0006954 150 0.011
positive regulation of nucleic acid templated transcription GO:1903508 197 0.011
regulation of intracellular transport GO:0032386 65 0.011
dendrite development GO:0016358 72 0.011
negative regulation of cellular protein metabolic process GO:0032269 106 0.011
gliogenesis GO:0042063 93 0.011
chromosome segregation GO:0007059 2 0.011
signal transduction by phosphorylation GO:0023014 144 0.011
response to estrogen GO:0043627 232 0.011
regulation of nucleoside metabolic process GO:0009118 66 0.011
positive regulation of cellular amine metabolic process GO:0033240 3 0.011
negative regulation of programmed cell death GO:0043069 183 0.011
sequestering of metal ion GO:0051238 9 0.011
negative regulation of cell death GO:0060548 229 0.011
regulation of cell migration GO:0030334 128 0.011
cellular protein complex assembly GO:0043623 44 0.011
regulation of cell morphogenesis involved in differentiation GO:0010769 72 0.011
positive regulation of phosphorylation GO:0042327 177 0.011
gtp metabolic process GO:0046039 72 0.011
embryonic axis specification GO:0000578 1 0.011
single organism carbohydrate metabolic process GO:0044723 118 0.011
glycosyl compound catabolic process GO:1901658 126 0.011
immune system process GO:0002376 204 0.011
negative regulation of catalytic activity GO:0043086 103 0.011
gtp catabolic process GO:0006184 71 0.011
muscle tissue development GO:0060537 58 0.011
guanosine containing compound catabolic process GO:1901069 71 0.011
carbohydrate metabolic process GO:0005975 130 0.011
response to activity GO:0014823 73 0.010
regulation of ion homeostasis GO:2000021 63 0.010
wound healing GO:0042060 122 0.010
positive regulation of transcription from rna polymerase ii promoter GO:0045944 148 0.010
mapk cascade GO:0000165 140 0.010
regulation of cellular catabolic process GO:0031329 101 0.010
dna metabolic process GO:0006259 96 0.010
appendage morphogenesis GO:0035107 4 0.010
positive regulation of cell death GO:0010942 184 0.010
stem cell division GO:0017145 4 0.010
regulation of response to external stimulus GO:0032101 106 0.010
biological adhesion GO:0022610 110 0.010
Rat
regulation of mapk cascade GO:0043408 116 0.010
regulation of small gtpase mediated signal transduction GO:0051056 48 0.010
regulation of cell growth GO:0001558 85 0.010
regulation of nucleotide catabolic process GO:0030811 65 0.010
rna localization GO:0006403 4 0.010
regulation of calcium ion transport GO:0051924 77 0.010

Limch1 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
nervous system disease DOID:863 0 0.023
disease of anatomical entity DOID:7 0 0.023
musculoskeletal system disease DOID:17 0 0.021
muscular disease DOID:0080000 0 0.015
muscle tissue disease DOID:66 0 0.015
myopathy DOID:423 0 0.013
sensory system disease DOID:0050155 0 0.010