Rattus norvegicus

0 known processes

Rlim

ring finger protein, LIM domain interacting

(Aliases: Rnf12)

Rlim biological process predictions


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Biological process GO term ID Process size Probability Func Analog Org
transcription dna templated GO:0006351 377 0.115
negative regulation of cellular metabolic process GO:0031324 281 0.078
rna biosynthetic process GO:0032774 380 0.077
regulation of molecular function GO:0065009 398 0.075
single organism reproductive process GO:0044702 297 0.069
Rat
regulation of signal transduction GO:0009966 318 0.069
intracellular signal transduction GO:0035556 314 0.067
rna metabolic process GO:0016070 406 0.061
regulation of protein metabolic process GO:0051246 289 0.061
purine containing compound metabolic process GO:0072521 253 0.060
reproductive process GO:0022414 372 0.059
Rat
response to oxygen levels GO:0070482 265 0.058
programmed cell death GO:0012501 392 0.056
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.055
regulation of rna metabolic process GO:0051252 391 0.053
negative regulation of metabolic process GO:0009892 331 0.051
nucleic acid templated transcription GO:0097659 379 0.051
regulation of rna biosynthetic process GO:2001141 381 0.051
response to wounding GO:0009611 254 0.050
negative regulation of programmed cell death GO:0043069 183 0.050
response to inorganic substance GO:0010035 377 0.050
negative regulation of macromolecule metabolic process GO:0010605 260 0.049
regulation of multicellular organismal development GO:2000026 376 0.049
hormone transport GO:0009914 121 0.046
regulation of phosphorus metabolic process GO:0051174 349 0.046
positive regulation of multicellular organismal process GO:0051240 387 0.045
secretion GO:0046903 307 0.043
organic acid metabolic process GO:0006082 292 0.041
regulation of transcription dna templated GO:0006355 374 0.041
cellular ketone metabolic process GO:0042180 51 0.040
negative regulation of gene expression GO:0010629 199 0.040
oxoacid metabolic process GO:0043436 290 0.040
cellular amino acid metabolic process GO:0006520 107 0.039
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.038
regulation of phosphorylation GO:0042325 248 0.038
regulation of cellular ketone metabolic process GO:0010565 27 0.037
ribonucleotide metabolic process GO:0009259 231 0.037
carboxylic acid metabolic process GO:0019752 289 0.036
response to peptide GO:1901652 292 0.035
negative regulation of biosynthetic process GO:0009890 168 0.035
regulation of protein modification process GO:0031399 194 0.035
carbohydrate derivative metabolic process GO:1901135 346 0.034
nucleobase containing small molecule metabolic process GO:0055086 316 0.034
regulation of cellular amine metabolic process GO:0033238 8 0.034
cellular response to endogenous stimulus GO:0071495 377 0.034
positive regulation of gene expression GO:0010628 244 0.034
response to peptide hormone GO:0043434 278 0.034
single organism biosynthetic process GO:0044711 342 0.034
alpha amino acid metabolic process GO:1901605 71 0.033
regulation of programmed cell death GO:0043067 341 0.033
transcription from rna polymerase ii promoter GO:0006366 252 0.033
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.032
reproductive structure development GO:0048608 128 0.032
Rat
negative regulation of nucleobase containing compound metabolic process GO:0045934 153 0.031
regulation of secretion GO:0051046 224 0.030
gonad development GO:0008406 104 0.030
Rat
regulation of nucleic acid templated transcription GO:1903506 380 0.030
hormone secretion GO:0046879 115 0.029
amine metabolic process GO:0009308 38 0.029
lipid metabolic process GO:0006629 283 0.029
positive regulation of developmental process GO:0051094 283 0.029
regulation of cellular localization GO:0060341 263 0.028
regulation of apoptotic process GO:0042981 335 0.028
cellular component assembly GO:0022607 360 0.028
positive regulation of cell communication GO:0010647 271 0.028
signal release GO:0023061 145 0.027
regulation of hormone levels GO:0010817 187 0.027
response to carbohydrate GO:0009743 183 0.027
regulation of phosphate metabolic process GO:0019220 349 0.027
cellular response to growth factor stimulus GO:0071363 162 0.027
cell cell signaling GO:0007267 335 0.027
positive regulation of molecular function GO:0044093 230 0.027
regulation of cellular protein metabolic process GO:0032268 267 0.027
regulation of cellular amino acid metabolic process GO:0006521 2 0.027
positive regulation of cellular biosynthetic process GO:0031328 295 0.027
cellular catabolic process GO:0044248 295 0.026
regulation of intracellular signal transduction GO:1902531 218 0.026
oxidation reduction process GO:0055114 304 0.026
cellular modified amino acid metabolic process GO:0006575 61 0.026
regulation of catalytic activity GO:0050790 304 0.026
multicellular organismal reproductive process GO:0048609 233 0.025
positive regulation of rna biosynthetic process GO:1902680 197 0.025
development of primary sexual characteristics GO:0045137 107 0.025
Rat
secretion by cell GO:0032940 248 0.025
cellular amine metabolic process GO:0044106 38 0.025
chemical homeostasis GO:0048878 292 0.024
positive regulation of biosynthetic process GO:0009891 319 0.024
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 85 0.024
multicellular organism reproduction GO:0032504 233 0.024
locomotion GO:0040011 237 0.023
anatomical structure morphogenesis GO:0009653 298 0.023
negative regulation of phosphorus metabolic process GO:0010563 80 0.023
negative regulation of cell communication GO:0010648 158 0.023
regulation of cellular response to stress GO:0080135 49 0.023
apoptotic process GO:0006915 381 0.023
positive regulation of nucleic acid templated transcription GO:1903508 197 0.023
cellular response to oxygen containing compound GO:1901701 386 0.022
regulation of hormone secretion GO:0046883 106 0.022
regulation of hydrolase activity GO:0051336 143 0.022
protein phosphorylation GO:0006468 345 0.022
cellular response to lipid GO:0071396 201 0.022
nucleotide metabolic process GO:0009117 279 0.022
reproduction GO:0000003 245 0.022
cellular response to cytokine stimulus GO:0071345 127 0.021
regulation of cell proliferation GO:0042127 359 0.021
response to growth factor GO:0070848 189 0.021
organic substance catabolic process GO:1901575 316 0.021
neuron differentiation GO:0030182 368 0.021
response to monosaccharide GO:0034284 159 0.021
reproductive system development GO:0061458 128 0.021
Rat
purine ribonucleoside metabolic process GO:0046128 168 0.021
peptide transport GO:0015833 97 0.021
organophosphate metabolic process GO:0019637 370 0.021
cellular component biogenesis GO:0044085 368 0.021
eye morphogenesis GO:0048592 4 0.020
regulation of secretion by cell GO:1903530 208 0.020
positive regulation of cell proliferation GO:0008284 249 0.020
positive regulation of transcription dna templated GO:0045893 197 0.020
response to nutrient GO:0007584 248 0.020
response to hexose GO:0009746 144 0.020
positive regulation of cellular amino acid metabolic process GO:0045764 1 0.020
response to extracellular stimulus GO:0009991 380 0.020
signal transduction by phosphorylation GO:0023014 144 0.020
purine nucleoside metabolic process GO:0042278 169 0.020
response to cytokine GO:0034097 215 0.020
positive regulation of cell differentiation GO:0045597 217 0.019
ribose phosphate metabolic process GO:0019693 235 0.019
regulation of neuron death GO:1901214 115 0.019
regulation of cellular component movement GO:0051270 150 0.019
positive regulation of catalytic activity GO:0043085 184 0.019
negative regulation of cellular biosynthetic process GO:0031327 161 0.019
negative regulation of apoptotic process GO:0043066 181 0.019
response to glucose GO:0009749 136 0.019
neuron development GO:0048666 286 0.019
regulation of cell differentiation GO:0045595 320 0.019
nucleoside metabolic process GO:0009116 179 0.019
intracellular transport GO:0046907 185 0.019
cell type specific apoptotic process GO:0097285 134 0.018
peptide hormone secretion GO:0030072 84 0.018
regulation of response to stress GO:0080134 126 0.018
positive regulation of rna metabolic process GO:0051254 203 0.018
negative regulation of molecular function GO:0044092 133 0.018
catabolic process GO:0009056 351 0.018
positive regulation of signaling GO:0023056 270 0.018
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.018
negative regulation of cell death GO:0060548 229 0.018
positive regulation of cellular amine metabolic process GO:0033240 3 0.018
response to interleukin 1 GO:0070555 55 0.018
negative regulation of response to stimulus GO:0048585 155 0.018
cellular response to nitrogen compound GO:1901699 210 0.018
negative regulation of protein metabolic process GO:0051248 114 0.018
negative regulation of rna biosynthetic process GO:1902679 118 0.018
gland development GO:0048732 155 0.017
response to purine containing compound GO:0014074 126 0.017
sex differentiation GO:0007548 113 0.017
Rat
negative regulation of cellular macromolecule biosynthetic process GO:2000113 141 0.017
response to decreased oxygen levels GO:0036293 237 0.017
negative regulation of nucleic acid templated transcription GO:1903507 117 0.017
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.017
response to oxidative stress GO:0006979 186 0.017
multi organism reproductive process GO:0044703 262 0.017
regulation of transferase activity GO:0051338 123 0.017
cellular divalent inorganic cation homeostasis GO:0072503 162 0.017
positive regulation of phosphate metabolic process GO:0045937 262 0.017
response to lipopolysaccharide GO:0032496 191 0.017
negative regulation of cellular protein metabolic process GO:0032269 106 0.017
nucleoside phosphate metabolic process GO:0006753 283 0.016
regulation of peptide hormone secretion GO:0090276 80 0.016
macromolecular complex subunit organization GO:0043933 339 0.016
amide transport GO:0042886 105 0.016
epithelial cell differentiation GO:0030855 71 0.016
organophosphate catabolic process GO:0046434 148 0.016
nucleoside triphosphate metabolic process GO:0009141 144 0.016
regulation of cell development GO:0060284 263 0.016
cellular response to stress GO:0033554 269 0.016
ribonucleoside metabolic process GO:0009119 174 0.016
proteolysis GO:0006508 175 0.016
single organism intracellular transport GO:1902582 166 0.016
developmental process involved in reproduction GO:0003006 159 0.016
Rat
transmembrane transport GO:0055085 412 0.016
positive regulation of phosphorylation GO:0042327 177 0.015
regulation of protein phosphorylation GO:0001932 183 0.015
regulation of canonical wnt signaling pathway GO:0060828 4 0.015
negative regulation of cell proliferation GO:0008285 119 0.015
positive regulation of response to stimulus GO:0048584 285 0.015
positive regulation of transcription from rna polymerase ii promoter GO:0045944 148 0.015
response to mechanical stimulus GO:0009612 134 0.015
urogenital system development GO:0001655 78 0.015
response to hypoxia GO:0001666 231 0.015
cytokine biosynthetic process GO:0042089 3 0.015
response to metal ion GO:0010038 253 0.015
mapk cascade GO:0000165 140 0.015
aging GO:0007568 241 0.015
neurological system process GO:0050877 219 0.015
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.015
positive regulation of locomotion GO:0040017 102 0.015
macromolecular complex assembly GO:0065003 273 0.015
g protein coupled receptor signaling pathway GO:0007186 242 0.015
glycosyl compound metabolic process GO:1901657 182 0.014
localization of cell GO:0051674 202 0.014
organic cyclic compound catabolic process GO:1901361 175 0.014
cell motility GO:0048870 202 0.014
single organism catabolic process GO:0044712 283 0.014
regulation of anatomical structure morphogenesis GO:0022603 141 0.014
cellular chemical homeostasis GO:0055082 247 0.014
gamete generation GO:0007276 124 0.014
positive regulation of secretion GO:0051047 140 0.014
regulation of neuron differentiation GO:0045664 208 0.014
response to molecule of bacterial origin GO:0002237 194 0.014
protein modification by small protein conjugation GO:0032446 31 0.014
epithelium development GO:0060429 96 0.014
negative regulation of signaling GO:0023057 157 0.014
divalent inorganic cation homeostasis GO:0072507 165 0.014
protein complex assembly GO:0006461 263 0.014
regulation of ion transport GO:0043269 245 0.014
regulation of nervous system development GO:0051960 264 0.014
ossification GO:0001503 70 0.014
reactive nitrogen species metabolic process GO:2001057 1 0.014
response to organophosphorus GO:0046683 102 0.014
positive regulation of cell motility GO:2000147 97 0.014
protein modification by small protein conjugation or removal GO:0070647 35 0.013
positive regulation of cell development GO:0010720 176 0.013
negative regulation of signal transduction GO:0009968 83 0.013
cellular homeostasis GO:0019725 252 0.013
negative regulation of catalytic activity GO:0043086 103 0.013
purine ribonucleotide metabolic process GO:0009150 227 0.013
negative regulation of transport GO:0051051 136 0.013
regulation of smooth muscle cell proliferation GO:0048660 75 0.013
negative regulation of transcription dna templated GO:0045892 116 0.013
spermatogenesis GO:0007283 99 0.013
regulation of system process GO:0044057 208 0.013
central nervous system development GO:0007417 311 0.013
regulation of mapk cascade GO:0043408 116 0.013
positive regulation of protein metabolic process GO:0051247 178 0.013
neuron death GO:0070997 127 0.013
purine nucleotide metabolic process GO:0006163 229 0.013
regulation of cell motility GO:2000145 131 0.013
axis specification GO:0009798 4 0.013
nucleotide catabolic process GO:0009166 139 0.013
positive regulation of signal transduction GO:0009967 175 0.013
cellular modified amino acid biosynthetic process GO:0042398 18 0.013
lipid biosynthetic process GO:0008610 128 0.013
respiratory system development GO:0060541 45 0.012
gastrulation GO:0007369 2 0.012
enzyme linked receptor protein signaling pathway GO:0007167 116 0.012
response to axon injury GO:0048678 59 0.012
regulation of locomotion GO:0040012 148 0.012
apoptotic signaling pathway GO:0097190 27 0.012
nitrogen compound transport GO:0071705 229 0.012
non canonical wnt signaling pathway GO:0035567 3 0.012
response to bacterium GO:0009617 200 0.012
prostate gland morphogenesis GO:0060512 2 0.012
camera type eye morphogenesis GO:0048593 2 0.012
ion homeostasis GO:0050801 212 0.012
ribonucleotide catabolic process GO:0009261 136 0.012
retina morphogenesis in camera type eye GO:0060042 1 0.012
regulation of neuron apoptotic process GO:0043523 83 0.012
male gamete generation GO:0048232 99 0.012
peptidyl amino acid modification GO:0018193 126 0.012
cellular nitrogen compound catabolic process GO:0044270 163 0.012
regulation of cell cycle GO:0051726 73 0.012
positive regulation of secretion by cell GO:1903532 128 0.012
smooth muscle cell proliferation GO:0048659 77 0.012
regulation of peptide transport GO:0090087 87 0.012
regulation of catabolic process GO:0009894 113 0.012
small molecule biosynthetic process GO:0044283 124 0.012
cellular cation homeostasis GO:0030003 180 0.012
cardiovascular system development GO:0072358 134 0.012
antigen receptor mediated signaling pathway GO:0050851 1 0.012
reactive oxygen species biosynthetic process GO:1903409 8 0.012
establishment of synaptic specificity at neuromuscular junction GO:0007529 1 0.012
small gtpase mediated signal transduction GO:0007264 36 0.012
response to estradiol GO:0032355 164 0.012
positive regulation of hydrolase activity GO:0051345 86 0.011
response to radiation GO:0009314 137 0.011
dna metabolic process GO:0006259 96 0.011
cell cycle checkpoint GO:0000075 2 0.011
regeneration GO:0031099 163 0.011
nucleoside phosphate catabolic process GO:1901292 140 0.011
coenzyme metabolic process GO:0006732 86 0.011
protein complex subunit organization GO:0071822 302 0.011
peptidyl tyrosine phosphorylation GO:0018108 72 0.011
defense response GO:0006952 194 0.011
positive regulation of ion transport GO:0043270 94 0.011
behavior GO:0007610 205 0.011
cellular response to peptide GO:1901653 133 0.011
cellular macromolecule localization GO:0070727 122 0.011
positive regulation of cellular component organization GO:0051130 200 0.011
purine ribonucleotide catabolic process GO:0009154 136 0.011
regulation of peptide secretion GO:0002791 82 0.011
metal ion transport GO:0030001 289 0.011
glycosyl compound catabolic process GO:1901658 126 0.011
cell cycle GO:0007049 101 0.011
cytoplasmic transport GO:0016482 115 0.011
adult locomotory behavior GO:0008344 4 0.011
regulation of neuron projection development GO:0010975 161 0.011
cell projection organization GO:0030030 302 0.011
bmp signaling pathway GO:0030509 4 0.011
protein ubiquitination GO:0016567 28 0.011
heterocycle catabolic process GO:0046700 167 0.011
regulation of protein kinase activity GO:0045859 105 0.010
regulation of arp2 3 complex mediated actin nucleation GO:0034315 2 0.010
ras protein signal transduction GO:0007265 29 0.010
cellular response to hormone stimulus GO:0032870 247 0.010
response to external biotic stimulus GO:0043207 221 0.010
insulin like growth factor receptor signaling pathway GO:0048009 3 0.010
regulation of insulin secretion GO:0050796 65 0.010
rhythmic process GO:0048511 156 0.010
purine containing compound catabolic process GO:0072523 138 0.010
cellular response to organic cyclic compound GO:0071407 202 0.010
regulation of mesenchymal cell proliferation GO:0010464 4 0.010
negative regulation of rna metabolic process GO:0051253 123 0.010
cellular protein localization GO:0034613 122 0.010
homeostatic process GO:0042592 331 0.010
anterior posterior pattern specification GO:0009952 1 0.010
response to biotic stimulus GO:0009607 226 0.010
positive regulation of cellular protein metabolic process GO:0032270 167 0.010
response to acid chemical GO:0001101 222 0.010
positive regulation of hormone secretion GO:0046887 65 0.010
response to vitamin GO:0033273 131 0.010
immune system process GO:0002376 204 0.010
female pregnancy GO:0007565 122 0.010
response to reactive oxygen species GO:0000302 120 0.010
purine ribonucleoside triphosphate metabolic process GO:0009205 140 0.010

Rlim disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.026
nervous system disease DOID:863 0 0.026
sensory system disease DOID:0050155 0 0.019
disease of metabolism DOID:0014667 0 0.018
inherited metabolic disorder DOID:655 0 0.018
eye and adnexa disease DOID:1492 0 0.017
eye disease DOID:5614 0 0.013
disease of cellular proliferation DOID:14566 0 0.012
cancer DOID:162 0 0.011
organ system cancer DOID:0050686 0 0.011