Rattus norvegicus

0 known processes

Msx3

homeo box, msh-like 3

Msx3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
programmed cell death GO:0012501 392 0.042
Zebrafish Rat
apoptotic process GO:0006915 381 0.040
Zebrafish Rat
cellular response to oxygen containing compound GO:1901701 386 0.038
organic acid metabolic process GO:0006082 292 0.038
oxoacid metabolic process GO:0043436 290 0.036
response to inorganic substance GO:0010035 377 0.036
central nervous system development GO:0007417 311 0.035
Rat Fly
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.034
neuron differentiation GO:0030182 368 0.032
intracellular signal transduction GO:0035556 314 0.030
transcription dna templated GO:0006351 377 0.030
Mouse Rat
rna biosynthetic process GO:0032774 380 0.030
Mouse Rat
response to metal ion GO:0010038 253 0.030
ion transmembrane transport GO:0034220 365 0.030
transmembrane transport GO:0055085 412 0.029
carboxylic acid metabolic process GO:0019752 289 0.029
response to extracellular stimulus GO:0009991 380 0.029
chemical homeostasis GO:0048878 292 0.029
carbohydrate derivative metabolic process GO:1901135 346 0.029
homeostatic process GO:0042592 331 0.029
rna metabolic process GO:0016070 406 0.029
Mouse Rat
regulation of molecular function GO:0065009 398 0.028
regulation of cell proliferation GO:0042127 359 0.028
cellular response to endogenous stimulus GO:0071495 377 0.028
Rat
response to acid chemical GO:0001101 222 0.028
cellular component assembly GO:0022607 360 0.028
reproductive process GO:0022414 372 0.028
Fly
regulation of rna biosynthetic process GO:2001141 381 0.027
Mouse Rat
regulation of multicellular organismal development GO:2000026 376 0.027
response to nutrient levels GO:0031667 370 0.027
regulation of transcription dna templated GO:0006355 374 0.027
Mouse Rat
response to oxygen levels GO:0070482 265 0.027
single organism reproductive process GO:0044702 297 0.027
Fly
regulation of cell differentiation GO:0045595 320 0.027
Fly
nucleotide metabolic process GO:0009117 279 0.026
regulation of cellular amine metabolic process GO:0033238 8 0.026
nucleobase containing small molecule metabolic process GO:0055086 316 0.026
positive regulation of biosynthetic process GO:0009891 319 0.026
cation transport GO:0006812 382 0.026
regulation of cellular amino acid metabolic process GO:0006521 2 0.026
cellular component biogenesis GO:0044085 368 0.026
aging GO:0007568 241 0.025
regulation of rna metabolic process GO:0051252 391 0.025
Mouse Rat
nucleic acid templated transcription GO:0097659 379 0.025
Mouse Rat
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.025
macromolecular complex subunit organization GO:0043933 339 0.025
Mouse
cellular amino acid metabolic process GO:0006520 107 0.025
regulation of catalytic activity GO:0050790 304 0.025
protein complex subunit organization GO:0071822 302 0.025
organophosphate metabolic process GO:0019637 370 0.025
neuron projection development GO:0031175 273 0.025
cellular amine metabolic process GO:0044106 38 0.024
catabolic process GO:0009056 351 0.024
protein phosphorylation GO:0006468 345 0.024
organic substance catabolic process GO:1901575 316 0.024
cellular homeostasis GO:0019725 252 0.024
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.024
Mouse Rat
positive regulation of phosphorus metabolic process GO:0010562 262 0.024
regulation of nervous system development GO:0051960 264 0.024
regulation of phosphate metabolic process GO:0019220 349 0.024
cellular chemical homeostasis GO:0055082 247 0.023
purine containing compound metabolic process GO:0072521 253 0.023
protein complex biogenesis GO:0070271 263 0.023
regulation of signal transduction GO:0009966 318 0.023
negative regulation of metabolic process GO:0009892 331 0.023
Mouse Fly
protein complex assembly GO:0006461 263 0.023
head development GO:0060322 247 0.023
Rat Fly
cellular catabolic process GO:0044248 295 0.023
multicellular organismal reproductive process GO:0048609 233 0.023
regulation of apoptotic process GO:0042981 335 0.023
Zebrafish Rat
positive regulation of cellular biosynthetic process GO:0031328 295 0.022
circulatory system process GO:0003013 183 0.022
regulation of cellular protein metabolic process GO:0032268 267 0.022
Mouse
reproduction GO:0000003 245 0.022
single organism catabolic process GO:0044712 283 0.022
response to nutrient GO:0007584 248 0.022
metal ion transport GO:0030001 289 0.022
regulation of phosphorus metabolic process GO:0051174 349 0.022
multicellular organism reproduction GO:0032504 233 0.022
regulation of nucleic acid templated transcription GO:1903506 380 0.021
Mouse Rat
macromolecular complex assembly GO:0065003 273 0.021
cellular response to nitrogen compound GO:1901699 210 0.021
Rat
positive regulation of multicellular organismal process GO:0051240 387 0.021
amine metabolic process GO:0009308 38 0.021
ion homeostasis GO:0050801 212 0.021
cellular response to organic cyclic compound GO:0071407 202 0.021
Rat
cellular ketone metabolic process GO:0042180 51 0.021
heart morphogenesis GO:0003007 3 0.021
cell projection organization GO:0030030 302 0.021
regulation of system process GO:0044057 208 0.021
brain development GO:0007420 247 0.021
Rat Fly
cation transmembrane transport GO:0098655 263 0.021
negative regulation of macromolecule metabolic process GO:0010605 260 0.021
Mouse Fly
positive regulation of molecular function GO:0044093 230 0.021
ribonucleotide metabolic process GO:0009259 231 0.021
positive regulation of cell proliferation GO:0008284 249 0.021
regulation of cellular ketone metabolic process GO:0010565 27 0.021
response to decreased oxygen levels GO:0036293 237 0.020
response to bacterium GO:0009617 200 0.020
positive regulation of catalytic activity GO:0043085 184 0.020
organelle organization GO:0006996 266 0.020
Mouse
regulation of neurogenesis GO:0050767 247 0.020
positive regulation of rna metabolic process GO:0051254 203 0.020
single organism biosynthetic process GO:0044711 342 0.020
secretion GO:0046903 307 0.020
neuron development GO:0048666 286 0.020
regulation of cell development GO:0060284 263 0.020
cellular component movement GO:0006928 248 0.020
purine ribonucleotide metabolic process GO:0009150 227 0.020
positive regulation of gene expression GO:0010628 244 0.020
cellular response to organonitrogen compound GO:0071417 197 0.020
Rat
regulation of cellular component organization GO:0051128 368 0.020
Mouse
cellular response to growth factor stimulus GO:0071363 162 0.020
cellular response to stress GO:0033554 269 0.020
response to peptide hormone GO:0043434 278 0.020
positive regulation of response to stimulus GO:0048584 285 0.019
anatomical structure morphogenesis GO:0009653 298 0.019
Zebrafish Fly
regulation of programmed cell death GO:0043067 341 0.019
Zebrafish Rat
response to hypoxia GO:0001666 231 0.019
positive regulation of developmental process GO:0051094 283 0.019
response to cytokine GO:0034097 215 0.019
positive regulation of phosphate metabolic process GO:0045937 262 0.019
multi organism reproductive process GO:0044703 262 0.019
protein oligomerization GO:0051259 191 0.019
cation homeostasis GO:0055080 195 0.019
negative regulation of signaling GO:0023057 157 0.019
response to carbohydrate GO:0009743 183 0.019
response to corticosteroid GO:0031960 235 0.019
negative regulation of cellular metabolic process GO:0031324 281 0.019
Mouse
response to estrogen GO:0043627 232 0.018
blood circulation GO:0008015 183 0.018
response to growth factor GO:0070848 189 0.018
ribose phosphate metabolic process GO:0019693 235 0.018
proteolysis GO:0006508 175 0.018
nucleoside phosphate metabolic process GO:0006753 283 0.018
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.018
response to other organism GO:0051707 220 0.018
response to glucocorticoid GO:0051384 223 0.018
response to monosaccharide GO:0034284 159 0.018
regulation of neuron differentiation GO:0045664 208 0.018
regulation of intracellular signal transduction GO:1902531 218 0.018
positive regulation of signaling GO:0023056 270 0.018
cellular response to lipid GO:0071396 201 0.017
positive regulation of phosphorylation GO:0042327 177 0.017
regulation of protein metabolic process GO:0051246 289 0.017
Mouse
response to biotic stimulus GO:0009607 226 0.017
response to external biotic stimulus GO:0043207 221 0.017
tissue development GO:0009888 252 0.017
Zebrafish Rat
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.017
Mouse
positive regulation of transcription dna templated GO:0045893 197 0.017
response to wounding GO:0009611 254 0.017
Zebrafish
regulation of phosphorylation GO:0042325 248 0.017
cellular response to hormone stimulus GO:0032870 247 0.017
response to lipopolysaccharide GO:0032496 191 0.017
neurological system process GO:0050877 219 0.016
transcription from rna polymerase ii promoter GO:0006366 252 0.016
Mouse Rat
response to molecule of bacterial origin GO:0002237 194 0.016
response to transition metal nanoparticle GO:1990267 122 0.016
positive regulation of cellular amino acid metabolic process GO:0045764 1 0.016
response to hexose GO:0009746 144 0.016
cellular ion homeostasis GO:0006873 184 0.016
purine ribonucleoside metabolic process GO:0046128 168 0.016
negative regulation of multicellular organismal process GO:0051241 203 0.016
positive regulation of cellular amine metabolic process GO:0033240 3 0.016
positive regulation of cell differentiation GO:0045597 217 0.016
metal ion homeostasis GO:0055065 186 0.016
positive regulation of nucleic acid templated transcription GO:1903508 197 0.016
negative regulation of gene expression GO:0010629 199 0.016
Mouse Fly
locomotion GO:0040011 237 0.016
response to peptide GO:1901652 292 0.016
regulation of membrane potential GO:0042391 110 0.016
ras protein signal transduction GO:0007265 29 0.016
negative regulation of apoptotic process GO:0043066 181 0.016
macromolecule localization GO:0033036 252 0.016
response to vitamin GO:0033273 131 0.016
lipid metabolic process GO:0006629 283 0.016
negative regulation of cell death GO:0060548 229 0.015
developmental process involved in reproduction GO:0003006 159 0.015
Fly
negative regulation of programmed cell death GO:0043069 183 0.015
regulation of cellular localization GO:0060341 263 0.015
negative regulation of cellular biosynthetic process GO:0031327 161 0.015
Mouse
positive regulation of cell death GO:0010942 184 0.015
Rat
purine nucleoside metabolic process GO:0042278 169 0.015
negative regulation of cell communication GO:0010648 158 0.015
reproductive structure development GO:0048608 128 0.015
Fly
nitrogen compound transport GO:0071705 229 0.015
response to ketone GO:1901654 182 0.015
calcium ion homeostasis GO:0055074 162 0.015
cell motility GO:0048870 202 0.015
regulation of anatomical structure size GO:0090066 135 0.015
response to oxidative stress GO:0006979 186 0.015
purine nucleotide metabolic process GO:0006163 229 0.015
inorganic ion transmembrane transport GO:0098660 229 0.015
cell cell signaling GO:0007267 335 0.015
positive regulation of transcription from rna polymerase ii promoter GO:0045944 148 0.015
cellular cation homeostasis GO:0030003 180 0.014
ribonucleoside metabolic process GO:0009119 174 0.014
inorganic cation transmembrane transport GO:0098662 202 0.014
muscle system process GO:0003012 115 0.014
glycosyl compound metabolic process GO:1901657 182 0.014
negative regulation of biosynthetic process GO:0009890 168 0.014
Mouse
axis specification GO:0009798 4 0.014
response to glucose GO:0009749 136 0.014
regulation of cell projection organization GO:0031344 175 0.014
oxidation reduction process GO:0055114 304 0.014
positive regulation of nervous system development GO:0051962 178 0.014
localization of cell GO:0051674 202 0.014
small gtpase mediated signal transduction GO:0007264 36 0.014
response to alkaloid GO:0043279 132 0.014
Rat
monovalent inorganic cation transport GO:0015672 172 0.014
regulation of ion transport GO:0043269 245 0.014
regulation of neuron projection development GO:0010975 161 0.014
regulation of protein modification process GO:0031399 194 0.014
Mouse
cellular metal ion homeostasis GO:0006875 172 0.014
positive regulation of cell communication GO:0010647 271 0.014
single organism organelle organization GO:1902589 180 0.014
Mouse
positive regulation of programmed cell death GO:0043068 157 0.014
Rat
cellular divalent inorganic cation homeostasis GO:0072503 162 0.014
divalent inorganic cation homeostasis GO:0072507 165 0.014
response to estradiol GO:0032355 164 0.014
organonitrogen compound catabolic process GO:1901565 179 0.014
positive regulation of cell development GO:0010720 176 0.014
cellular response to peptide GO:1901653 133 0.014
cellular lipid metabolic process GO:0044255 208 0.014
secretion by cell GO:0032940 248 0.014
cellular calcium ion homeostasis GO:0006874 160 0.014
defense response GO:0006952 194 0.014
g protein coupled receptor signaling pathway GO:0007186 242 0.014
organophosphate catabolic process GO:0046434 148 0.014
gastrulation GO:0007369 2 0.014
cell morphogenesis GO:0000902 142 0.014
positive regulation of rna biosynthetic process GO:1902680 197 0.014
nucleoside metabolic process GO:0009116 179 0.013
multicellular organismal signaling GO:0035637 44 0.013
positive regulation of cellular component organization GO:0051130 200 0.013
regulation of protein phosphorylation GO:0001932 183 0.013
organonitrogen compound biosynthetic process GO:1901566 167 0.013
action potential GO:0001508 54 0.013
regulation of locomotion GO:0040012 148 0.013
sexual reproduction GO:0019953 148 0.013
regulation of secretion GO:0051046 224 0.013
organic cyclic compound catabolic process GO:1901361 175 0.013
anion transport GO:0006820 178 0.013
nucleobase containing compound catabolic process GO:0034655 152 0.013
regulation of hormone levels GO:0010817 187 0.013
eye morphogenesis GO:0048592 4 0.013
intracellular transport GO:0046907 185 0.013
aromatic compound catabolic process GO:0019439 168 0.013
multi multicellular organism process GO:0044706 138 0.013
heterocycle catabolic process GO:0046700 167 0.013
transmission of nerve impulse GO:0019226 42 0.013
cell migration GO:0016477 197 0.013
positive regulation of intracellular signal transduction GO:1902533 138 0.013
regulation of hydrolase activity GO:0051336 143 0.013
positive regulation of protein modification process GO:0031401 142 0.013
purine containing compound catabolic process GO:0072523 138 0.013
positive regulation of protein phosphorylation GO:0001934 135 0.013
reproductive system development GO:0061458 128 0.013
Fly
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.013
Mouse
rhythmic process GO:0048511 156 0.013
regeneration GO:0031099 163 0.013
Zebrafish
cell type specific apoptotic process GO:0097285 134 0.013
Zebrafish
positive regulation of neurogenesis GO:0050769 165 0.013
neuron death GO:0070997 127 0.013
Zebrafish
synaptic transmission GO:0007268 235 0.013
carbohydrate derivative biosynthetic process GO:1901137 124 0.013
female pregnancy GO:0007565 122 0.012
regulation of secretion by cell GO:1903530 208 0.012
regulation of cell motility GO:2000145 131 0.012
gamete generation GO:0007276 124 0.012
positive regulation of neuron differentiation GO:0045666 126 0.012
divalent inorganic cation transport GO:0072511 134 0.012
cytosolic calcium ion homeostasis GO:0051480 140 0.012
regulation of mapk cascade GO:0043408 116 0.012
positive regulation of signal transduction GO:0009967 175 0.012
divalent metal ion transport GO:0070838 132 0.012
organic anion transport GO:0015711 132 0.012
sex differentiation GO:0007548 113 0.012
Fly
calcium ion transport GO:0006816 131 0.012
response to toxic substance GO:0009636 133 0.012
regulation of synaptic transmission GO:0050804 141 0.012
neuronal action potential GO:0019228 35 0.012
regulation of transferase activity GO:0051338 123 0.012
cellular component morphogenesis GO:0032989 155 0.012
purine ribonucleotide catabolic process GO:0009154 136 0.012
response to ethanol GO:0045471 162 0.012
anterior posterior pattern specification GO:0009952 1 0.012
carboxylic acid transport GO:0046942 115 0.012
response to organophosphorus GO:0046683 102 0.012
spermatogenesis GO:0007283 99 0.012
ribonucleoside triphosphate metabolic process GO:0009199 141 0.012
cellular nitrogen compound catabolic process GO:0044270 163 0.012
organophosphate biosynthetic process GO:0090407 143 0.012
actin filament based process GO:0030029 86 0.011
protein localization GO:0008104 191 0.011
limb morphogenesis GO:0035108 4 0.011
organic acid transport GO:0015849 116 0.011
regulation of catabolic process GO:0009894 113 0.011
regulation of nucleotide metabolic process GO:0006140 117 0.011
cell projection morphogenesis GO:0048858 123 0.011
cell growth GO:0016049 104 0.011
negative regulation of nucleobase containing compound metabolic process GO:0045934 153 0.011
Mouse
positive regulation of cellular protein metabolic process GO:0032270 167 0.011
carbohydrate metabolic process GO:0005975 130 0.011
regulation of canonical wnt signaling pathway GO:0060828 4 0.011
regulation of cell migration GO:0030334 128 0.011
cardiovascular system development GO:0072358 134 0.011
tube development GO:0035295 89 0.011
muscle contraction GO:0006936 88 0.011
gonad development GO:0008406 104 0.011
circulatory system development GO:0072359 134 0.011
response to amino acid GO:0043200 75 0.011
regulation of cellular component movement GO:0051270 150 0.011
nucleotide catabolic process GO:0009166 139 0.011
purine ribonucleoside catabolic process GO:0046130 124 0.011
cellular response to alcohol GO:0097306 87 0.011
single organism carbohydrate metabolic process GO:0044723 118 0.011
growth GO:0040007 165 0.011
Zebrafish
male gamete generation GO:0048232 99 0.011
ribonucleotide catabolic process GO:0009261 136 0.011
behavior GO:0007610 205 0.011
development of primary sexual characteristics GO:0045137 107 0.011
negative regulation of transport GO:0051051 136 0.011
purine nucleoside triphosphate metabolic process GO:0009144 141 0.011
regulation of blood circulation GO:1903522 110 0.011
appendage morphogenesis GO:0035107 4 0.011
Fly
positive regulation of protein metabolic process GO:0051247 178 0.011
carbohydrate derivative catabolic process GO:1901136 147 0.011
single organism intracellular transport GO:1902582 166 0.011
cell part morphogenesis GO:0032990 123 0.011
chromosome segregation GO:0007059 2 0.011
negative regulation of response to stimulus GO:0048585 155 0.011
regulation of growth GO:0040008 105 0.011
positive regulation of cytosolic calcium ion concentration GO:0007204 122 0.011
response to purine containing compound GO:0014074 126 0.011
negative regulation of rna biosynthetic process GO:1902679 118 0.010
Mouse
response to radiation GO:0009314 137 0.010
negative regulation of protein metabolic process GO:0051248 114 0.010
Mouse
cellular response to acid chemical GO:0071229 75 0.010
salivary gland development GO:0007431 3 0.010
regulation of purine nucleotide metabolic process GO:1900542 115 0.010
purine nucleotide catabolic process GO:0006195 136 0.010
positive regulation of apoptotic process GO:0043065 154 0.010
Rat
cellular response to abiotic stimulus GO:0071214 85 0.010
regulation of kinase activity GO:0043549 117 0.010
response to mechanical stimulus GO:0009612 134 0.010
gland development GO:0048732 155 0.010
Rat
forebrain development GO:0030900 98 0.010
Rat
sequestering of calcium ion GO:0051208 8 0.010
cardiac chamber development GO:0003205 1 0.010
neuron projection morphogenesis GO:0048812 122 0.010

Msx3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.033
nervous system disease DOID:863 0 0.033
sensory system disease DOID:0050155 0 0.019
musculoskeletal system disease DOID:17 0 0.015
retinal disease DOID:5679 0 0.014
eye and adnexa disease DOID:1492 0 0.014
eye disease DOID:5614 0 0.014
disease of metabolism DOID:0014667 0 0.014
central nervous system disease DOID:331 0 0.011
inherited metabolic disorder DOID:655 0 0.010
connective tissue disease DOID:65 0 0.010