Rattus norvegicus

0 known processes

Prpf3

PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)

Prpf3 biological process predictions


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Biological process GO term ID Process size Probability Func Analog Org
regulation of transcription dna templated GO:0006355 374 0.137
cellular component biogenesis GO:0044085 368 0.135
carboxylic acid metabolic process GO:0019752 289 0.131
rna biosynthetic process GO:0032774 380 0.124
transcription dna templated GO:0006351 377 0.122
rna metabolic process GO:0016070 406 0.121
transcription from rna polymerase ii promoter GO:0006366 252 0.106
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.096
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.089
negative regulation of rna metabolic process GO:0051253 123 0.089
nucleic acid templated transcription GO:0097659 379 0.083
negative regulation of macromolecule metabolic process GO:0010605 260 0.080
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.079
rhythmic process GO:0048511 156 0.072
cellular catabolic process GO:0044248 295 0.069
neuron differentiation GO:0030182 368 0.068
regulation of nucleic acid templated transcription GO:1903506 380 0.065
regulation of neurogenesis GO:0050767 247 0.065
cellular response to endogenous stimulus GO:0071495 377 0.065
single organism catabolic process GO:0044712 283 0.060
regulation of cell proliferation GO:0042127 359 0.060
negative regulation of nucleic acid templated transcription GO:1903507 117 0.057
regulation of cell morphogenesis GO:0022604 77 0.055
organelle organization GO:0006996 266 0.052
negative regulation of cellular biosynthetic process GO:0031327 161 0.051
regulation of neuron differentiation GO:0045664 208 0.051
oxoacid metabolic process GO:0043436 290 0.050
positive regulation of cell development GO:0010720 176 0.048
cellular amino acid metabolic process GO:0006520 107 0.047
regulation of rna metabolic process GO:0051252 391 0.047
negative regulation of cellular metabolic process GO:0031324 281 0.046
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.045
single organism biosynthetic process GO:0044711 342 0.045
regulation of anatomical structure morphogenesis GO:0022603 141 0.045
positive regulation of cellular biosynthetic process GO:0031328 295 0.045
multi organism reproductive process GO:0044703 262 0.044
regulation of rna biosynthetic process GO:2001141 381 0.043
negative regulation of rna biosynthetic process GO:1902679 118 0.042
organophosphate metabolic process GO:0019637 370 0.041
macromolecular complex subunit organization GO:0043933 339 0.041
organic acid metabolic process GO:0006082 292 0.039
positive regulation of biosynthetic process GO:0009891 319 0.039
reproductive process GO:0022414 372 0.039
cellular response to growth factor stimulus GO:0071363 162 0.038
response to growth factor GO:0070848 189 0.037
regulation of programmed cell death GO:0043067 341 0.037
negative regulation of metabolic process GO:0009892 331 0.037
protein phosphorylation GO:0006468 345 0.036
negative regulation of transcription dna templated GO:0045892 116 0.036
carbohydrate derivative metabolic process GO:1901135 346 0.036
cell projection organization GO:0030030 302 0.035
positive regulation of transforming growth factor beta3 production GO:0032916 2 0.035
signal transduction by phosphorylation GO:0023014 144 0.034
positive regulation of rna metabolic process GO:0051254 203 0.033
single organism reproductive process GO:0044702 297 0.033
catabolic process GO:0009056 351 0.033
neuron development GO:0048666 286 0.033
negative regulation of gene expression GO:0010629 199 0.033
response to nutrient levels GO:0031667 370 0.033
glycosyl compound metabolic process GO:1901657 182 0.032
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.032
programmed cell death GO:0012501 392 0.032
response to cytokine GO:0034097 215 0.031
positive regulation of nucleic acid templated transcription GO:1903508 197 0.031
positive regulation of transcription dna templated GO:0045893 197 0.031
regulation of multicellular organismal development GO:2000026 376 0.031
response to extracellular stimulus GO:0009991 380 0.029
macromolecular complex assembly GO:0065003 273 0.029
developmental process involved in reproduction GO:0003006 159 0.029
positive regulation of gene expression GO:0010628 244 0.029
positive regulation of molecular function GO:0044093 230 0.029
motor neuron axon guidance GO:0008045 1 0.028
response to corticosteroid GO:0031960 235 0.028
positive regulation of protein metabolic process GO:0051247 178 0.027
response to estrogen GO:0043627 232 0.027
regulation of protein metabolic process GO:0051246 289 0.027
intracellular signal transduction GO:0035556 314 0.027
negative regulation of cellular macromolecule biosynthetic process GO:2000113 141 0.026
anterior posterior pattern specification GO:0009952 1 0.026
response to ethanol GO:0045471 162 0.026
anion transport GO:0006820 178 0.026
positive regulation of cell differentiation GO:0045597 217 0.026
regulation of cell development GO:0060284 263 0.026
positive regulation of developmental process GO:0051094 283 0.025
regulation of phosphate metabolic process GO:0019220 349 0.025
regulation of phosphorus metabolic process GO:0051174 349 0.025
negative regulation of nucleobase containing compound metabolic process GO:0045934 153 0.025
nucleobase containing small molecule metabolic process GO:0055086 316 0.024
purine containing compound metabolic process GO:0072521 253 0.024
developmental growth GO:0048589 100 0.024
regulation of nervous system development GO:0051960 264 0.023
positive regulation of neuron differentiation GO:0045666 126 0.023
chromosome segregation GO:0007059 2 0.023
gastrulation GO:0007369 2 0.023
protein complex biogenesis GO:0070271 263 0.023
ribonucleotide metabolic process GO:0009259 231 0.023
ribose phosphate metabolic process GO:0019693 235 0.022
biological adhesion GO:0022610 110 0.022
transforming growth factor beta3 production GO:0032907 2 0.022
multicellular organism growth GO:0035264 1 0.022
tissue development GO:0009888 252 0.022
cell morphogenesis involved in differentiation GO:0000904 119 0.022
ribonucleoside metabolic process GO:0009119 174 0.022
organonitrogen compound biosynthetic process GO:1901566 167 0.022
response to nutrient GO:0007584 248 0.022
protein complex assembly GO:0006461 263 0.022
positive regulation of transcription from rna polymerase ii promoter GO:0045944 148 0.022
regulation of organelle organization GO:0033043 80 0.022
protein transport GO:0015031 132 0.022
cellular amine metabolic process GO:0044106 38 0.021
alpha amino acid metabolic process GO:1901605 71 0.021
hormone metabolic process GO:0042445 69 0.021
ras protein signal transduction GO:0007265 29 0.021
purine ribonucleoside metabolic process GO:0046128 168 0.021
response to purine containing compound GO:0014074 126 0.021
regulation of neuron projection development GO:0010975 161 0.021
positive regulation of neurogenesis GO:0050769 165 0.021
organophosphate biosynthetic process GO:0090407 143 0.020
regulation of cellular component organization GO:0051128 368 0.020
positive regulation of phosphorus metabolic process GO:0010562 262 0.020
purine nucleotide metabolic process GO:0006163 229 0.020
cellular response to cytokine stimulus GO:0071345 127 0.020
ribonucleoside catabolic process GO:0042454 126 0.020
positive regulation of cell proliferation GO:0008284 249 0.020
response to glucocorticoid GO:0051384 223 0.020
organic cyclic compound catabolic process GO:1901361 175 0.020
cellular ketone metabolic process GO:0042180 51 0.020
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.020
regulation of protein phosphorylation GO:0001932 183 0.020
carbohydrate derivative biosynthetic process GO:1901137 124 0.020
regulation of lymphocyte migration GO:2000401 1 0.020
positive regulation of phosphate metabolic process GO:0045937 262 0.020
nucleoside phosphate metabolic process GO:0006753 283 0.020
cellular nitrogen compound catabolic process GO:0044270 163 0.019
ribonucleotide biosynthetic process GO:0009260 85 0.019
purine ribonucleotide metabolic process GO:0009150 227 0.019
female pregnancy GO:0007565 122 0.019
positive regulation of rna biosynthetic process GO:1902680 197 0.019
negative regulation of cell death GO:0060548 229 0.019
regulation of cell differentiation GO:0045595 320 0.019
axis specification GO:0009798 4 0.019
nitrogen compound transport GO:0071705 229 0.019
nucleobase containing compound catabolic process GO:0034655 152 0.019
regulation of secretion by cell GO:1903530 208 0.019
regulation of cell morphogenesis involved in differentiation GO:0010769 72 0.019
organonitrogen compound catabolic process GO:1901565 179 0.019
secretion GO:0046903 307 0.019
cellular component assembly GO:0022607 360 0.018
nucleoside triphosphate metabolic process GO:0009141 144 0.018
response to transforming growth factor beta GO:0071559 46 0.018
protein heterooligomerization GO:0051291 89 0.018
single organism organelle organization GO:1902589 180 0.018
negative regulation of transcription from rna polymerase ii promoter GO:0000122 75 0.018
heterocycle catabolic process GO:0046700 167 0.017
central nervous system development GO:0007417 311 0.017
purine ribonucleotide biosynthetic process GO:0009152 81 0.017
positive regulation of cellular component organization GO:0051130 200 0.017
ribonucleoside triphosphate metabolic process GO:0009199 141 0.017
positive regulation of protein modification process GO:0031401 142 0.017
response to alkaloid GO:0043279 132 0.017
response to hypoxia GO:0001666 231 0.017
multicellular organism reproduction GO:0032504 233 0.017
bmp signaling pathway GO:0030509 4 0.017
cellular component morphogenesis GO:0032989 155 0.017
nucleoside metabolic process GO:0009116 179 0.017
nucleoside phosphate biosynthetic process GO:1901293 102 0.017
circadian rhythm GO:0007623 88 0.017
purine ribonucleoside catabolic process GO:0046130 124 0.016
muscle structure development GO:0061061 87 0.016
regulation of molecular function GO:0065009 398 0.016
neuron projection development GO:0031175 273 0.016
ovulation cycle GO:0042698 67 0.016
embryonic pattern specification GO:0009880 1 0.016
embryonic skeletal system development GO:0048706 3 0.016
ribose phosphate biosynthetic process GO:0046390 87 0.016
regulation of apoptotic process GO:0042981 335 0.016
regulation of growth GO:0040008 105 0.015
monocarboxylic acid metabolic process GO:0032787 152 0.015
neurological system process GO:0050877 219 0.015
cellular response to transforming growth factor beta stimulus GO:0071560 41 0.015
amine metabolic process GO:0009308 38 0.015
regulation of transforming growth factor beta3 production GO:0032910 2 0.015
regulation of protein modification process GO:0031399 194 0.015
reproduction GO:0000003 245 0.015
embryonic axis specification GO:0000578 1 0.015
response to wounding GO:0009611 254 0.015
guanosine containing compound metabolic process GO:1901068 74 0.015
regulation of cell projection organization GO:0031344 175 0.015
purine ribonucleotide catabolic process GO:0009154 136 0.015
organic substance catabolic process GO:1901575 316 0.014
cellular lipid metabolic process GO:0044255 208 0.014
response to ketone GO:1901654 182 0.014
single organism intracellular transport GO:1902582 166 0.014
protein oligomerization GO:0051259 191 0.014
nucleotide metabolic process GO:0009117 279 0.014
single organism carbohydrate catabolic process GO:0044724 40 0.014
regulation of homeostatic process GO:0032844 101 0.014
positive regulation of phosphorylation GO:0042327 177 0.014
nucleobase biosynthetic process GO:0046112 2 0.014
cell morphogenesis GO:0000902 142 0.014
response to reactive oxygen species GO:0000302 120 0.014
cell part morphogenesis GO:0032990 123 0.014
regulation of phosphorylation GO:0042325 248 0.014
cellular response to stress GO:0033554 269 0.014
purine nucleoside triphosphate catabolic process GO:0009146 122 0.014
negative regulation of cell communication GO:0010648 158 0.013
single organism behavior GO:0044708 130 0.013
positive regulation of catabolic process GO:0009896 78 0.013
regulation of bmp signaling pathway GO:0030510 2 0.013
positive regulation of transcription initiation from rna polymerase ii promoter GO:0060261 3 0.013
positive regulation of cellular protein metabolic process GO:0032270 167 0.013
cellular response to tumor necrosis factor GO:0071356 46 0.013
intestinal absorption GO:0050892 3 0.013
regulation of catabolic process GO:0009894 113 0.013
liver development GO:0001889 90 0.013
purine nucleotide biosynthetic process GO:0006164 83 0.012
cellular macromolecular complex assembly GO:0034622 58 0.012
chemical homeostasis GO:0048878 292 0.012
response to peptide hormone GO:0043434 278 0.012
synaptic growth at neuromuscular junction GO:0051124 1 0.012
positive regulation of multicellular organismal process GO:0051240 387 0.012
purine containing compound biosynthetic process GO:0072522 85 0.012
regulation of alternative mrna splicing via spliceosome GO:0000381 2 0.012
meiotic cell cycle process GO:1903046 3 0.012
mapk cascade GO:0000165 140 0.012
synaptic transmission GO:0007268 235 0.012
lipid metabolic process GO:0006629 283 0.012
regulation of mesenchymal cell proliferation GO:0010464 4 0.012
alternative mrna splicing via spliceosome GO:0000380 4 0.012
tetrahydrofolate metabolic process GO:0046653 9 0.012
regulation of exocytosis GO:0017157 37 0.012
regulation of nucleotide metabolic process GO:0006140 117 0.012
intracellular transport GO:0046907 185 0.012
regulation of protein kinase activity GO:0045859 105 0.011
cellular response to oxidative stress GO:0034599 76 0.011
mitotic sister chromatid separation GO:0051306 1 0.011
ribonucleotide catabolic process GO:0009261 136 0.011
regulation of hormone levels GO:0010817 187 0.011
response to organophosphorus GO:0046683 102 0.011
negative regulation of cellular protein metabolic process GO:0032269 106 0.011
regulation of metanephros development GO:0072215 4 0.011
regulation of transcription elongation from rna polymerase ii promoter GO:0034243 4 0.011
regulation of gtpase activity GO:0043087 57 0.011
response to cocaine GO:0042220 39 0.011
regulation of synaptic transmission GO:0050804 141 0.011
pteridine containing compound metabolic process GO:0042558 14 0.011
eye morphogenesis GO:0048592 4 0.011
ribonucleoside triphosphate catabolic process GO:0009203 122 0.011
memory GO:0007613 54 0.011
spindle organization GO:0007051 2 0.011
positive regulation of mapk cascade GO:0043410 92 0.011
regulation of cellular protein metabolic process GO:0032268 267 0.010
cellular response to hormone stimulus GO:0032870 247 0.010
positive regulation of protein kinase activity GO:0045860 73 0.010
negative regulation of nervous system development GO:0051961 79 0.010
formation of primary germ layer GO:0001704 1 0.010
regulation of cellular amino acid metabolic process GO:0006521 2 0.010
response to toxic substance GO:0009636 133 0.010
positive regulation of rna polymerase ii transcriptional preinitiation complex assembly GO:0045899 3 0.010
protein complex subunit organization GO:0071822 302 0.010
brain development GO:0007420 247 0.010

Prpf3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.037
nervous system disease DOID:863 0 0.037
retinal disease DOID:5679 0 0.030
retinal degeneration DOID:8466 0 0.030
sensory system disease DOID:0050155 0 0.030
eye and adnexa disease DOID:1492 0 0.030
eye disease DOID:5614 0 0.030
cancer DOID:162 0 0.020
disease of cellular proliferation DOID:14566 0 0.020
organ system cancer DOID:0050686 0 0.020
gastrointestinal system cancer DOID:3119 0 0.014
hepatocellular carcinoma DOID:684 0 0.014
liver carcinoma DOID:686 0 0.014
liver cancer DOID:3571 0 0.014
central nervous system disease DOID:331 0 0.012