Rattus norvegicus

12 known processes

Plod3

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

(Aliases: MGC93055)

Plod3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
chemical homeostasis GO:0048878 292 0.191
cellular response to endogenous stimulus GO:0071495 377 0.168
regulation of phosphate metabolic process GO:0019220 349 0.161
cell cell signaling GO:0007267 335 0.148
positive regulation of programmed cell death GO:0043068 157 0.134
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.123
macromolecular complex subunit organization GO:0043933 339 0.118
Mouse
ion homeostasis GO:0050801 212 0.113
nucleotide metabolic process GO:0009117 279 0.098
regulation of cellular localization GO:0060341 263 0.097
cellular homeostasis GO:0019725 252 0.095
positive regulation of cell communication GO:0010647 271 0.094
positive regulation of phosphate metabolic process GO:0045937 262 0.086
nucleobase containing small molecule metabolic process GO:0055086 316 0.082
cellular response to oxygen containing compound GO:1901701 386 0.081
regulation of protein metabolic process GO:0051246 289 0.081
protein complex subunit organization GO:0071822 302 0.079
Mouse
cellular calcium ion homeostasis GO:0006874 160 0.077
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.076
programmed cell death GO:0012501 392 0.076
homeostatic process GO:0042592 331 0.076
regulation of cell differentiation GO:0045595 320 0.071
cation transport GO:0006812 382 0.070
intracellular signal transduction GO:0035556 314 0.070
macromolecular complex assembly GO:0065003 273 0.068
positive regulation of phosphorus metabolic process GO:0010562 262 0.068
metal ion transport GO:0030001 289 0.068
regulation of signal transduction GO:0009966 318 0.067
regulation of rna metabolic process GO:0051252 391 0.067
cellular divalent inorganic cation homeostasis GO:0072503 162 0.065
cellular cation homeostasis GO:0030003 180 0.064
response to hypoxia GO:0001666 231 0.063
Rat
nucleoside phosphate metabolic process GO:0006753 283 0.062
metal ion homeostasis GO:0055065 186 0.062
regulation of apoptotic process GO:0042981 335 0.062
organonitrogen compound catabolic process GO:1901565 179 0.060
regulation of phosphorus metabolic process GO:0051174 349 0.059
calcium ion homeostasis GO:0055074 162 0.058
positive regulation of multicellular organismal process GO:0051240 387 0.057
secretion GO:0046903 307 0.057
cellular chemical homeostasis GO:0055082 247 0.057
transmembrane transport GO:0055085 412 0.057
regulation of cellular component organization GO:0051128 368 0.055
regulation of cellular protein metabolic process GO:0032268 267 0.054
macromolecule localization GO:0033036 252 0.054
Mouse
behavior GO:0007610 205 0.053
positive regulation of developmental process GO:0051094 283 0.052
regulation of protein localization GO:0032880 81 0.052
regulation of programmed cell death GO:0043067 341 0.051
peptidyl lysine hydroxylation GO:0017185 1 0.050
Rat
organophosphate metabolic process GO:0019637 370 0.050
apoptotic process GO:0006915 381 0.050
positive regulation of response to stimulus GO:0048584 285 0.049
regulation of secretion by cell GO:1903530 208 0.049
tissue development GO:0009888 252 0.049
Mouse
positive regulation of phosphorylation GO:0042327 177 0.049
negative regulation of metabolic process GO:0009892 331 0.048
head development GO:0060322 247 0.048
positive regulation of cell death GO:0010942 184 0.048
cell migration GO:0016477 197 0.048
response to estrogen GO:0043627 232 0.047
synaptic transmission GO:0007268 235 0.047
g protein coupled receptor signaling pathway GO:0007186 242 0.047
rna metabolic process GO:0016070 406 0.046
organic substance catabolic process GO:1901575 316 0.045
positive regulation of signal transduction GO:0009967 175 0.045
response to wounding GO:0009611 254 0.044
cellular component assembly GO:0022607 360 0.044
Mouse
regulation of secretion GO:0051046 224 0.044
purine containing compound metabolic process GO:0072521 253 0.044
response to ketone GO:1901654 182 0.043
positive regulation of rna metabolic process GO:0051254 203 0.043
positive regulation of molecular function GO:0044093 230 0.043
cation homeostasis GO:0055080 195 0.042
positive regulation of secretion by cell GO:1903532 128 0.042
regulation of mapk cascade GO:0043408 116 0.041
ribose phosphate metabolic process GO:0019693 235 0.041
single organism intracellular transport GO:1902582 166 0.041
response to inorganic substance GO:0010035 377 0.041
secretion by cell GO:0032940 248 0.041
positive regulation of cellular biosynthetic process GO:0031328 295 0.040
cellular metal ion homeostasis GO:0006875 172 0.040
divalent inorganic cation homeostasis GO:0072507 165 0.039
regulation of cell proliferation GO:0042127 359 0.039
protein phosphorylation GO:0006468 345 0.038
organonitrogen compound biosynthetic process GO:1901566 167 0.038
carbohydrate derivative metabolic process GO:1901135 346 0.038
protein complex assembly GO:0006461 263 0.037
positive regulation of cytosolic calcium ion concentration GO:0007204 122 0.037
localization of cell GO:0051674 202 0.037
regulation of catalytic activity GO:0050790 304 0.037
cell morphogenesis GO:0000902 142 0.036
Mouse
protein complex biogenesis GO:0070271 263 0.036
response to growth factor GO:0070848 189 0.035
aging GO:0007568 241 0.035
cytosolic calcium ion homeostasis GO:0051480 140 0.035
response to decreased oxygen levels GO:0036293 237 0.035
Rat
positive regulation of neurogenesis GO:0050769 165 0.034
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 85 0.034
mapk cascade GO:0000165 140 0.034
rna biosynthetic process GO:0032774 380 0.033
positive regulation of cellular component organization GO:0051130 200 0.032
positive regulation of cell development GO:0010720 176 0.032
anatomical structure morphogenesis GO:0009653 298 0.032
Mouse
positive regulation of cell differentiation GO:0045597 217 0.031
positive regulation of signaling GO:0023056 270 0.031
protein localization GO:0008104 191 0.031
Mouse
regulation of nucleic acid templated transcription GO:1903506 380 0.031
inorganic ion transmembrane transport GO:0098660 229 0.031
circulatory system development GO:0072359 134 0.031
regulation of rna biosynthetic process GO:2001141 381 0.031
regulation of system process GO:0044057 208 0.031
positive regulation of protein modification process GO:0031401 142 0.030
central nervous system development GO:0007417 311 0.030
regulation of transcription dna templated GO:0006355 374 0.030
epithelium development GO:0060429 96 0.030
Mouse
cellular ion homeostasis GO:0006873 184 0.030
cellular response to stress GO:0033554 269 0.030
neurological system process GO:0050877 219 0.030
regulation of calcium ion transport GO:0051924 77 0.029
purine ribonucleotide metabolic process GO:0009150 227 0.029
negative regulation of signaling GO:0023057 157 0.029
positive regulation of protein phosphorylation GO:0001934 135 0.029
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.029
ribonucleotide metabolic process GO:0009259 231 0.028
ion transmembrane transport GO:0034220 365 0.028
response to metal ion GO:0010038 253 0.028
regulation of protein phosphorylation GO:0001932 183 0.028
regulation of transferase activity GO:0051338 123 0.028
positive regulation of transport GO:0051050 245 0.028
negative regulation of cellular metabolic process GO:0031324 281 0.028
protein transport GO:0015031 132 0.027
regulation of multicellular organismal development GO:2000026 376 0.027
cellular component biogenesis GO:0044085 368 0.026
Mouse
positive regulation of intracellular signal transduction GO:1902533 138 0.026
purine nucleotide metabolic process GO:0006163 229 0.026
cellular response to hormone stimulus GO:0032870 247 0.026
regulation of nervous system development GO:0051960 264 0.026
cell projection organization GO:0030030 302 0.026
locomotion GO:0040011 237 0.026
regulation of protein transport GO:0051223 68 0.026
transcription dna templated GO:0006351 377 0.026
establishment of protein localization GO:0045184 141 0.026
regulation of protein modification process GO:0031399 194 0.026
ribonucleoside catabolic process GO:0042454 126 0.026
gliogenesis GO:0042063 93 0.025
carbohydrate derivative catabolic process GO:1901136 147 0.025
protein oligomerization GO:0051259 191 0.025
positive regulation of purine nucleotide metabolic process GO:1900544 91 0.025
cell activation GO:0001775 97 0.025
positive regulation of gene expression GO:0010628 244 0.025
regulation of intracellular signal transduction GO:1902531 218 0.025
regulation of metal ion transport GO:0010959 118 0.025
positive regulation of nucleotide metabolic process GO:0045981 91 0.025
positive regulation of cell projection organization GO:0031346 111 0.025
cell morphogenesis involved in differentiation GO:0000904 119 0.024
Mouse
nucleoside triphosphate catabolic process GO:0009143 123 0.024
brain development GO:0007420 247 0.024
lipid biosynthetic process GO:0008610 128 0.024
transcription from rna polymerase ii promoter GO:0006366 252 0.024
amine metabolic process GO:0009308 38 0.024
positive regulation of biosynthetic process GO:0009891 319 0.023
neuron differentiation GO:0030182 368 0.023
regulation of body fluid levels GO:0050878 90 0.023
response to ammonium ion GO:0060359 71 0.023
nitrogen compound transport GO:0071705 229 0.023
cellular amide metabolic process GO:0043603 44 0.023
positive regulation of cellular protein metabolic process GO:0032270 167 0.023
regulation of phosphorylation GO:0042325 248 0.023
response to nutrient levels GO:0031667 370 0.023
lipid metabolic process GO:0006629 283 0.023
hormone secretion GO:0046879 115 0.023
organelle organization GO:0006996 266 0.023
signal transduction by phosphorylation GO:0023014 144 0.023
negative regulation of cellular biosynthetic process GO:0031327 161 0.023
regulation of ion transport GO:0043269 245 0.023
positive regulation of apoptotic process GO:0043065 154 0.022
nucleoside catabolic process GO:0009164 126 0.022
positive regulation of secretion GO:0051047 140 0.022
cellular nitrogen compound catabolic process GO:0044270 163 0.022
regulation of nucleotide metabolic process GO:0006140 117 0.022
regulation of synaptic transmission GO:0050804 141 0.022
circulatory system process GO:0003013 183 0.022
Mouse
single organism biosynthetic process GO:0044711 342 0.022
response to estradiol GO:0032355 164 0.022
cell part morphogenesis GO:0032990 123 0.022
regulation of homeostatic process GO:0032844 101 0.022
response to alkaloid GO:0043279 132 0.022
proteolysis GO:0006508 175 0.021
catabolic process GO:0009056 351 0.021
regulation of cell morphogenesis GO:0022604 77 0.021
cell junction organization GO:0034330 21 0.021
inorganic cation transmembrane transport GO:0098662 202 0.021
divalent metal ion transport GO:0070838 132 0.021
male mating behavior GO:0060179 3 0.021
purine ribonucleotide catabolic process GO:0009154 136 0.021
cellular catabolic process GO:0044248 295 0.020
ribonucleotide catabolic process GO:0009261 136 0.020
regulation of protein kinase activity GO:0045859 105 0.020
purine nucleotide catabolic process GO:0006195 136 0.020
response to oxidative stress GO:0006979 186 0.020
regulation of hormone levels GO:0010817 187 0.020
purine ribonucleoside metabolic process GO:0046128 168 0.020
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.020
cyclic nucleotide metabolic process GO:0009187 80 0.020
nucleoside phosphate catabolic process GO:1901292 140 0.020
single organism cellular localization GO:1902580 102 0.020
negative regulation of transport GO:0051051 136 0.019
ras protein signal transduction GO:0007265 29 0.019
monovalent inorganic cation transport GO:0015672 172 0.019
response to carbohydrate GO:0009743 183 0.019
organophosphate biosynthetic process GO:0090407 143 0.019
nucleic acid templated transcription GO:0097659 379 0.019
glycosyl compound metabolic process GO:1901657 182 0.019
cellular response to organonitrogen compound GO:0071417 197 0.019
vesicle mediated transport GO:0016192 181 0.019
divalent inorganic cation transport GO:0072511 134 0.019
cellular amino acid metabolic process GO:0006520 107 0.019
positive regulation of hormone secretion GO:0046887 65 0.019
regulation of establishment of protein localization GO:0070201 69 0.019
negative regulation of cell death GO:0060548 229 0.019
single organism catabolic process GO:0044712 283 0.019
negative regulation of cell communication GO:0010648 158 0.019
intracellular transport GO:0046907 185 0.019
purine nucleoside catabolic process GO:0006152 124 0.019
neuron death GO:0070997 127 0.019
small gtpase mediated signal transduction GO:0007264 36 0.018
protein heterooligomerization GO:0051291 89 0.018
regulation of molecular function GO:0065009 398 0.018
reproductive process GO:0022414 372 0.018
Fly
muscle structure development GO:0061061 87 0.018
positive regulation of kinase activity GO:0033674 77 0.018
synaptic growth at neuromuscular junction GO:0051124 1 0.018
muscle system process GO:0003012 115 0.018
regulation of proteasomal protein catabolic process GO:0061136 4 0.018
organophosphate catabolic process GO:0046434 148 0.018
calcium ion transport GO:0006816 131 0.018
carbohydrate derivative biosynthetic process GO:1901137 124 0.017
negative regulation of transcription from rna polymerase ii promoter GO:0000122 75 0.017
response to external biotic stimulus GO:0043207 221 0.017
response to transition metal nanoparticle GO:1990267 122 0.017
response to other organism GO:0051707 220 0.017
dendrite development GO:0016358 72 0.017
cell adhesion GO:0007155 110 0.017
positive regulation of catalytic activity GO:0043085 184 0.017
intracellular protein transport GO:0006886 79 0.017
response to extracellular stimulus GO:0009991 380 0.017
ribonucleoside triphosphate metabolic process GO:0009199 141 0.016
response to peptide hormone GO:0043434 278 0.016
negative regulation of multicellular organismal process GO:0051241 203 0.016
response to bacterium GO:0009617 200 0.016
activation of protein kinase activity GO:0032147 47 0.016
negative regulation of macromolecule metabolic process GO:0010605 260 0.016
response to cytokine GO:0034097 215 0.016
peptidyl amino acid modification GO:0018193 126 0.016
Rat
regulation of cell projection organization GO:0031344 175 0.016
cell projection morphogenesis GO:0048858 123 0.016
cell motility GO:0048870 202 0.016
hormone transport GO:0009914 121 0.016
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.016
hemidesmosome assembly GO:0031581 1 0.016
regulation of growth GO:0040008 105 0.016
positive regulation of neuron differentiation GO:0045666 126 0.016
regulation of catabolic process GO:0009894 113 0.016
organic acid metabolic process GO:0006082 292 0.016
peptide metabolic process GO:0006518 32 0.015
nucleoside triphosphate metabolic process GO:0009141 144 0.015
female pregnancy GO:0007565 122 0.015
multi organism reproductive process GO:0044703 262 0.015
Fly
nuclear transport GO:0051169 49 0.015
camp metabolic process GO:0046058 63 0.015
positive regulation of transferase activity GO:0051347 81 0.015
positive regulation of cellular amino acid metabolic process GO:0045764 1 0.015
cellular component morphogenesis GO:0032989 155 0.015
Mouse
purine ribonucleoside catabolic process GO:0046130 124 0.015
gastrulation GO:0007369 2 0.015
positive regulation of neuron projection development GO:0010976 99 0.015
aromatic compound catabolic process GO:0019439 168 0.015
response to acid chemical GO:0001101 222 0.015
single organism behavior GO:0044708 130 0.015
signal release GO:0023061 145 0.015
regulation of cyclic nucleotide metabolic process GO:0030799 51 0.015
maintenance of location GO:0051235 17 0.015
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.015
regulation of dendrite development GO:0050773 59 0.014
cation transmembrane transport GO:0098655 263 0.014
negative regulation of nucleic acid templated transcription GO:1903507 117 0.014
dephosphorylation GO:0016311 98 0.014
cellular response to growth factor stimulus GO:0071363 162 0.014
cardiovascular system development GO:0072358 134 0.014
biological adhesion GO:0022610 110 0.014
reactive oxygen species metabolic process GO:0072593 37 0.014
cellular component movement GO:0006928 248 0.014
positive regulation of cellular amine metabolic process GO:0033240 3 0.014
regulation of cellular catabolic process GO:0031329 101 0.014
negative regulation of protein metabolic process GO:0051248 114 0.014
regulation of cell motility GO:2000145 131 0.014
cellular response to nitrogen compound GO:1901699 210 0.014
purine ribonucleotide biosynthetic process GO:0009152 81 0.014
positive regulation of nervous system development GO:0051962 178 0.014
negative regulation of nucleobase containing compound metabolic process GO:0045934 153 0.014
positive regulation of protein kinase activity GO:0045860 73 0.014
multicellular organism growth GO:0035264 1 0.014
coagulation GO:0050817 28 0.014
cytoplasmic transport GO:0016482 115 0.014
olfactory behavior GO:0042048 2 0.014
regulation of anatomical structure morphogenesis GO:0022603 141 0.014
response to toxic substance GO:0009636 133 0.013
potassium ion transport GO:0006813 97 0.013
regulation of hydrolase activity GO:0051336 143 0.013
neuron development GO:0048666 286 0.013
positive regulation of transcription dna templated GO:0045893 197 0.013
nucleobase containing compound catabolic process GO:0034655 152 0.013
positive regulation of mapk cascade GO:0043410 92 0.013
organic cyclic compound catabolic process GO:1901361 175 0.013
inflammatory response GO:0006954 150 0.013
regulation of cell development GO:0060284 263 0.013
adult locomotory behavior GO:0008344 4 0.013
cellular response to metal ion GO:0071248 55 0.013
regulation of neuron differentiation GO:0045664 208 0.013
ribonucleoside metabolic process GO:0009119 174 0.013
negative regulation of response to stimulus GO:0048585 155 0.013
reproduction GO:0000003 245 0.013
Fly
carboxylic acid metabolic process GO:0019752 289 0.013
response to oxygen levels GO:0070482 265 0.013
Rat
endocytosis GO:0006897 84 0.013
positive regulation of immunoglobulin production GO:0002639 4 0.013
negative regulation of apoptotic process GO:0043066 181 0.013
regulation of kinase activity GO:0043549 117 0.013
regulation of membrane potential GO:0042391 110 0.013
purine ribonucleoside triphosphate metabolic process GO:0009205 140 0.012
regulation of neuron death GO:1901214 115 0.012
response to fatty acid GO:0070542 65 0.012
regulation of purine nucleotide metabolic process GO:1900542 115 0.012
multicellular organismal reproductive process GO:0048609 233 0.012
Fly
response to corticosteroid GO:0031960 235 0.012
purine nucleoside triphosphate metabolic process GO:0009144 141 0.012
response to glucose GO:0009749 136 0.012
regulation of cellular amine metabolic process GO:0033238 8 0.012
regulation of protein secretion GO:0050708 28 0.012
sensory perception GO:0007600 101 0.012
regulation of cellular amino acid metabolic process GO:0006521 2 0.012
sequestering of calcium ion GO:0051208 8 0.011
negative regulation of transcription dna templated GO:0045892 116 0.011
regulation of mrna splicing via spliceosome GO:0048024 3 0.011
glycosyl compound catabolic process GO:1901658 126 0.011
cilium morphogenesis GO:0060271 2 0.011
nucleotide catabolic process GO:0009166 139 0.011
positive regulation of catabolic process GO:0009896 78 0.011
axis specification GO:0009798 4 0.011
positive regulation of rna biosynthetic process GO:1902680 197 0.011
regulation of tube size GO:0035150 89 0.011
Mouse
nucleotide biosynthetic process GO:0009165 98 0.011
negative regulation of rna metabolic process GO:0051253 123 0.011
cellular amine metabolic process GO:0044106 38 0.011
regulation of muscle system process GO:0090257 79 0.011
positive regulation of gtpase activity GO:0043547 47 0.011
actin filament based process GO:0030029 86 0.011
cytoskeleton organization GO:0007010 111 0.011
cellular response to peptide GO:1901653 133 0.011
negative regulation of biosynthetic process GO:0009890 168 0.011
neuron projection development GO:0031175 273 0.011
cellular response to oxygen levels GO:0071453 60 0.011
growth GO:0040007 165 0.011
Fly
cellular macromolecule localization GO:0070727 122 0.011
taxis GO:0042330 67 0.011
negative regulation of cellular protein metabolic process GO:0032269 106 0.011
purine nucleotide biosynthetic process GO:0006164 83 0.010
positive regulation of cellular catabolic process GO:0031331 71 0.010
glucose homeostasis GO:0042593 75 0.010
positive regulation of cell migration GO:0030335 96 0.010
negative regulation of rna splicing GO:0033119 3 0.010
positive regulation of nucleoside metabolic process GO:0045979 55 0.010
negative regulation of cellular macromolecule biosynthetic process GO:2000113 141 0.010
protein homooligomerization GO:0051260 91 0.010
heart morphogenesis GO:0003007 3 0.010
heterocycle catabolic process GO:0046700 167 0.010
platelet aggregation GO:0070527 4 0.010
regulation of vesicle mediated transport GO:0060627 81 0.010
peptide transport GO:0015833 97 0.010
positive regulation of hydrolase activity GO:0051345 86 0.010
single organism cell adhesion GO:0098602 46 0.010
nucleocytoplasmic transport GO:0006913 48 0.010
cellular response to inorganic substance GO:0071241 65 0.010

Plod3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.111
musculoskeletal system disease DOID:17 0 0.111
nervous system disease DOID:863 0 0.046
muscular disease DOID:0080000 0 0.028
muscle tissue disease DOID:66 0 0.028
sensory system disease DOID:0050155 0 0.018
central nervous system disease DOID:331 0 0.013
disease of cellular proliferation DOID:14566 0 0.012
bone disease DOID:0080001 0 0.012
connective tissue disease DOID:65 0 0.012
neuropathy DOID:870 0 0.011
cancer DOID:162 0 0.011
organ system cancer DOID:0050686 0 0.011
myopathy DOID:423 0 0.011