Rattus norvegicus

0 known processes

Trim3

tripartite motif-containing 3

(Aliases: Berp,Rnf22)

Trim3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
transcription dna templated GO:0006351 377 0.197
regulation of rna biosynthetic process GO:2001141 381 0.173
nucleotide catabolic process GO:0009166 139 0.148
neuron projection development GO:0031175 273 0.129
cell cell signaling GO:0007267 335 0.128
cell morphogenesis involved in neuron differentiation GO:0048667 106 0.122
cellular response to endogenous stimulus GO:0071495 377 0.111
carbohydrate derivative metabolic process GO:1901135 346 0.108
regulation of rna metabolic process GO:0051252 391 0.108
catabolic process GO:0009056 351 0.106
purine containing compound catabolic process GO:0072523 138 0.099
protein localization GO:0008104 191 0.094
organophosphate catabolic process GO:0046434 148 0.093
transcription from rna polymerase ii promoter GO:0006366 252 0.092
protein complex assembly GO:0006461 263 0.087
regulation of nucleic acid templated transcription GO:1903506 380 0.085
cellular component biogenesis GO:0044085 368 0.084
intracellular protein transport GO:0006886 79 0.083
chemical homeostasis GO:0048878 292 0.081
rna biosynthetic process GO:0032774 380 0.081
regulation of transcription dna templated GO:0006355 374 0.081
protein transport GO:0015031 132 0.079
purine nucleotide metabolic process GO:0006163 229 0.077
cellular response to oxygen containing compound GO:1901701 386 0.071
cellular macromolecule localization GO:0070727 122 0.071
cellular catabolic process GO:0044248 295 0.070
regulation of synaptic plasticity GO:0048167 70 0.070
positive regulation of transport GO:0051050 245 0.068
protein phosphorylation GO:0006468 345 0.067
purine ribonucleoside catabolic process GO:0046130 124 0.064
nucleic acid templated transcription GO:0097659 379 0.062
ribonucleotide metabolic process GO:0009259 231 0.059
neuron development GO:0048666 286 0.059
positive regulation of nitrogen compound metabolic process GO:0051173 334 0.059
programmed cell death GO:0012501 392 0.059
protein complex subunit organization GO:0071822 302 0.058
neuron differentiation GO:0030182 368 0.058
single organism cellular localization GO:1902580 102 0.056
single organism catabolic process GO:0044712 283 0.055
regulation of proteasomal protein catabolic process GO:0061136 4 0.054
purine nucleoside catabolic process GO:0006152 124 0.054
anatomical structure morphogenesis GO:0009653 298 0.054
regulation of molecular function GO:0065009 398 0.052
regulation of neurogenesis GO:0050767 247 0.052
protein complex biogenesis GO:0070271 263 0.051
anion transport GO:0006820 178 0.051
small gtpase mediated signal transduction GO:0007264 36 0.051
organophosphate metabolic process GO:0019637 370 0.050
ribose phosphate metabolic process GO:0019693 235 0.050
single organism organelle organization GO:1902589 180 0.050
regulation of phosphate metabolic process GO:0019220 349 0.049
regulation of synaptic transmission GO:0050804 141 0.049
regulation of multicellular organismal development GO:2000026 376 0.049
rna metabolic process GO:0016070 406 0.048
cell projection organization GO:0030030 302 0.048
ribonucleotide catabolic process GO:0009261 136 0.047
regulation of cell differentiation GO:0045595 320 0.047
organelle organization GO:0006996 266 0.046
regulation of cell development GO:0060284 263 0.046
regulation of signal transduction GO:0009966 318 0.045
positive regulation of nucleobase containing compound metabolic process GO:0045935 319 0.044
apoptotic process GO:0006915 381 0.043
response to metal ion GO:0010038 253 0.043
growth GO:0040007 165 0.043
response to extracellular stimulus GO:0009991 380 0.043
dendrite development GO:0016358 72 0.042
purine ribonucleotide metabolic process GO:0009150 227 0.042
regulation of nervous system development GO:0051960 264 0.042
regulation of cellular catabolic process GO:0031329 101 0.041
regulation of intracellular signal transduction GO:1902531 218 0.041
cellular component assembly GO:0022607 360 0.041
positive regulation of protein phosphorylation GO:0001934 135 0.040
nucleoside phosphate catabolic process GO:1901292 140 0.039
purine ribonucleotide catabolic process GO:0009154 136 0.038
muscle system process GO:0003012 115 0.038
response to transition metal nanoparticle GO:1990267 122 0.038
cellular response to hormone stimulus GO:0032870 247 0.038
establishment of protein localization GO:0045184 141 0.037
cellular protein localization GO:0034613 122 0.037
purine nucleotide catabolic process GO:0006195 136 0.037
anatomical structure formation involved in morphogenesis GO:0048646 83 0.036
positive regulation of biosynthetic process GO:0009891 319 0.036
circulatory system development GO:0072359 134 0.036
negative regulation of cell communication GO:0010648 158 0.036
regulation of secretion GO:0051046 224 0.035
positive regulation of multicellular organismal process GO:0051240 387 0.035
anterior posterior pattern specification GO:0009952 1 0.035
synaptic transmission GO:0007268 235 0.034
nucleotide metabolic process GO:0009117 279 0.034
regulation of catalytic activity GO:0050790 304 0.034
macromolecule localization GO:0033036 252 0.034
positive regulation of rna metabolic process GO:0051254 203 0.034
ras protein signal transduction GO:0007265 29 0.034
gtp catabolic process GO:0006184 71 0.033
organic substance catabolic process GO:1901575 316 0.033
glycosyl compound catabolic process GO:1901658 126 0.033
protein localization to membrane GO:0072657 36 0.032
single organism reproductive process GO:0044702 297 0.032
regulation of the force of heart contraction by chemical signal GO:0003057 2 0.032
mesoderm development GO:0007498 2 0.032
regulation of phosphorus metabolic process GO:0051174 349 0.032
regulation of anatomical structure morphogenesis GO:0022603 141 0.031
purine ribonucleoside triphosphate metabolic process GO:0009205 140 0.031
positive regulation of phosphorylation GO:0042327 177 0.031
positive regulation of macromolecule biosynthetic process GO:0010557 247 0.031
macromolecular complex assembly GO:0065003 273 0.030
homeostatic process GO:0042592 331 0.030
regulation of transcription from rna polymerase ii promoter GO:0006357 234 0.030
positive regulation of nucleic acid templated transcription GO:1903508 197 0.030
regulation of fat cell differentiation GO:0045598 3 0.030
sexual reproduction GO:0019953 148 0.029
cellular response to nitrogen compound GO:1901699 210 0.029
nucleobase containing small molecule metabolic process GO:0055086 316 0.029
purine ribonucleoside metabolic process GO:0046128 168 0.029
positive regulation of cell differentiation GO:0045597 217 0.029
negative regulation of gene expression GO:0010629 199 0.029
positive regulation of catabolic process GO:0009896 78 0.029
response to external biotic stimulus GO:0043207 221 0.028
nucleoside triphosphate metabolic process GO:0009141 144 0.028
cellular response to organonitrogen compound GO:0071417 197 0.028
multicellular organism reproduction GO:0032504 233 0.028
response to lipopolysaccharide GO:0032496 191 0.028
nucleobase containing compound catabolic process GO:0034655 152 0.027
positive regulation of protein metabolic process GO:0051247 178 0.027
negative regulation of macromolecule metabolic process GO:0010605 260 0.027
tissue development GO:0009888 252 0.027
single organism intracellular transport GO:1902582 166 0.027
purine containing compound metabolic process GO:0072521 253 0.027
organonitrogen compound catabolic process GO:1901565 179 0.027
reproductive process GO:0022414 372 0.027
neuron projection morphogenesis GO:0048812 122 0.027
secretion GO:0046903 307 0.026
cellular response to growth factor stimulus GO:0071363 162 0.026
negative regulation of signaling GO:0023057 157 0.026
regulation of nucleotide metabolic process GO:0006140 117 0.026
cardiovascular system development GO:0072358 134 0.026
positive regulation of gene expression GO:0010628 244 0.026
response to hexose GO:0009746 144 0.026
g protein coupled receptor internalization GO:0002031 3 0.026
response to oxygen levels GO:0070482 265 0.025
regulation of system process GO:0044057 208 0.025
response to growth factor GO:0070848 189 0.025
response to nutrient levels GO:0031667 370 0.025
positive regulation of phosphate metabolic process GO:0045937 262 0.025
regulation of programmed cell death GO:0043067 341 0.025
positive regulation of apoptotic process GO:0043065 154 0.025
carboxylic acid metabolic process GO:0019752 289 0.024
insulin like growth factor receptor signaling pathway GO:0048009 3 0.024
positive regulation of phosphorus metabolic process GO:0010562 262 0.024
positive regulation of molecular function GO:0044093 230 0.024
positive regulation of catalytic activity GO:0043085 184 0.024
positive regulation of cellular amino acid metabolic process GO:0045764 1 0.024
negative regulation of metabolic process GO:0009892 331 0.024
protein oligomerization GO:0051259 191 0.024
cell cycle GO:0007049 101 0.024
regulation of gtpase activity GO:0043087 57 0.024
regulation of anatomical structure size GO:0090066 135 0.024
cellular amine metabolic process GO:0044106 38 0.024
regulation of purine nucleotide catabolic process GO:0033121 65 0.023
heterocycle catabolic process GO:0046700 167 0.023
carbohydrate derivative catabolic process GO:1901136 147 0.023
axon cargo transport GO:0008088 1 0.023
synapse organization GO:0050808 46 0.023
cellular response to organic cyclic compound GO:0071407 202 0.023
cell part morphogenesis GO:0032990 123 0.023
organonitrogen compound biosynthetic process GO:1901566 167 0.023
regulation of apoptotic process GO:0042981 335 0.023
regulation of hydrolase activity GO:0051336 143 0.023
cell type specific apoptotic process GO:0097285 134 0.023
macromolecular complex subunit organization GO:0043933 339 0.022
positive regulation of cellular biosynthetic process GO:0031328 295 0.022
response to inorganic substance GO:0010035 377 0.022
single organism biosynthetic process GO:0044711 342 0.022
nucleoside metabolic process GO:0009116 179 0.022
cellular nitrogen compound catabolic process GO:0044270 163 0.022
centrosome localization GO:0051642 1 0.022
response to other organism GO:0051707 220 0.022
central nervous system development GO:0007417 311 0.022
localization of cell GO:0051674 202 0.022
regulation of catabolic process GO:0009894 113 0.022
gtp metabolic process GO:0046039 72 0.022
negative regulation of biosynthetic process GO:0009890 168 0.022
synaptic growth at neuromuscular junction GO:0051124 1 0.021
positive regulation of synapse maturation GO:0090129 2 0.021
negative regulation of nitrogen compound metabolic process GO:0051172 161 0.021
regulation of cell proliferation GO:0042127 359 0.021
phospholipid biosynthetic process GO:0008654 29 0.021
regulation of cellular protein metabolic process GO:0032268 267 0.021
cell growth GO:0016049 104 0.021
nitrogen compound transport GO:0071705 229 0.021
positive regulation of cell death GO:0010942 184 0.021
regulation of vesicle mediated transport GO:0060627 81 0.020
proteolysis GO:0006508 175 0.020
regulation of protein localization GO:0032880 81 0.020
ribonucleoside triphosphate catabolic process GO:0009203 122 0.020
immune system process GO:0002376 204 0.020
multi organism reproductive process GO:0044703 262 0.020
regulation of protein phosphorylation GO:0001932 183 0.020
negative regulation of cellular metabolic process GO:0031324 281 0.020
response to decreased oxygen levels GO:0036293 237 0.020
positive regulation of purine nucleotide metabolic process GO:1900544 91 0.020
regulation of cell maturation GO:1903429 3 0.020
ribonucleoside metabolic process GO:0009119 174 0.020
positive regulation of programmed cell death GO:0043068 157 0.020
purine ribonucleoside triphosphate catabolic process GO:0009207 122 0.020
regulation of proteolysis GO:0030162 66 0.020
regulation of neuron projection development GO:0010975 161 0.020
g protein coupled receptor signaling pathway GO:0007186 242 0.020
cellular chemical homeostasis GO:0055082 247 0.020
regulation of anion transport GO:0044070 43 0.020
ribonucleoside catabolic process GO:0042454 126 0.020
regulation of phosphorylation GO:0042325 248 0.020
regulation of protein metabolic process GO:0051246 289 0.019
regulation of purine nucleotide metabolic process GO:1900542 115 0.019
intracellular transport GO:0046907 185 0.019
single organism membrane organization GO:0044802 74 0.019
negative regulation of nervous system development GO:0051961 79 0.019
nucleoside phosphate metabolic process GO:0006753 283 0.019
glycosyl compound metabolic process GO:1901657 182 0.019
negative regulation of macromolecule biosynthetic process GO:0010558 148 0.019
developmental process involved in reproduction GO:0003006 159 0.019
developmental growth GO:0048589 100 0.019
aromatic compound catabolic process GO:0019439 168 0.019
positive regulation of cell development GO:0010720 176 0.019
cellular response to oxidative stress GO:0034599 76 0.019
positive regulation of cellular catabolic process GO:0031331 71 0.019
regulation of cell growth GO:0001558 85 0.019
secretion by cell GO:0032940 248 0.018
cellular lipid metabolic process GO:0044255 208 0.018
response to molecule of bacterial origin GO:0002237 194 0.018
mitotic spindle organization GO:0007052 2 0.018
olfactory behavior GO:0042048 2 0.018
nucleoside catabolic process GO:0009164 126 0.018
hormone transport GO:0009914 121 0.018
reproduction GO:0000003 245 0.017
nucleoside triphosphate catabolic process GO:0009143 123 0.017
regulation of nucleotide catabolic process GO:0030811 65 0.017
cellular response to lipid GO:0071396 201 0.017
positive regulation of transcription dna templated GO:0045893 197 0.017
regulation of stress activated mapk cascade GO:0032872 23 0.017
cell motility GO:0048870 202 0.017
multicellular organismal reproductive process GO:0048609 233 0.017
organic acid metabolic process GO:0006082 292 0.017
positive regulation of rna biosynthetic process GO:1902680 197 0.017
negative regulation of developmental process GO:0051093 125 0.017
tube development GO:0035295 89 0.017
regulation of secretion by cell GO:1903530 208 0.017
cellular response to biotic stimulus GO:0071216 59 0.017
regulation of cellular amino acid metabolic process GO:0006521 2 0.017
neuron death GO:0070997 127 0.016
cellular response to stress GO:0033554 269 0.016
regulation of hormone levels GO:0010817 187 0.016
regulation of synapse maturation GO:0090128 2 0.016
oxoacid metabolic process GO:0043436 290 0.016
memory GO:0007613 54 0.016
regulation of cellular localization GO:0060341 263 0.016
regulation of nucleoside metabolic process GO:0009118 66 0.016
rna localization GO:0006403 4 0.016
epithelium development GO:0060429 96 0.016
cell morphogenesis GO:0000902 142 0.016
axonogenesis GO:0007409 71 0.016
cellular component movement GO:0006928 248 0.016
cell morphogenesis involved in differentiation GO:0000904 119 0.016
positive regulation of transcription from rna polymerase ii promoter GO:0045944 148 0.016
positive regulation of secretion GO:0051047 140 0.016
cellular component morphogenesis GO:0032989 155 0.016
negative regulation of multicellular organismal process GO:0051241 203 0.016
cellular amino acid metabolic process GO:0006520 107 0.016
regulation of growth GO:0040008 105 0.016
endocytosis GO:0006897 84 0.016
neuron neuron synaptic transmission GO:0007270 60 0.016
membrane organization GO:0061024 94 0.016
axon development GO:0061564 96 0.015
negative regulation of canonical wnt signaling pathway GO:0090090 4 0.015
developmental maturation GO:0021700 25 0.015
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.015
cellular macromolecule catabolic process GO:0044265 29 0.015
positive regulation of cellular component organization GO:0051130 200 0.015
vesicle mediated transport GO:0016192 181 0.015
guanosine containing compound metabolic process GO:1901068 74 0.015
organic cyclic compound catabolic process GO:1901361 175 0.014
positive regulation of protein modification process GO:0031401 142 0.014
cellular response to lipopolysaccharide GO:0071222 55 0.014
intracellular signal transduction GO:0035556 314 0.014
gamete generation GO:0007276 124 0.014
response to estradiol GO:0032355 164 0.014
cell migration GO:0016477 197 0.014
negative regulation of molecular function GO:0044092 133 0.014
response to potassium ion GO:0035864 9 0.014
eye morphogenesis GO:0048592 4 0.014
organophosphate biosynthetic process GO:0090407 143 0.014
response to bacterium GO:0009617 200 0.014
tube formation GO:0035148 3 0.014
negative regulation of cellular biosynthetic process GO:0031327 161 0.014
purine nucleoside metabolic process GO:0042278 169 0.014
amine metabolic process GO:0009308 38 0.014
transmembrane transport GO:0055085 412 0.014
salivary gland morphogenesis GO:0007435 1 0.014
lipid metabolic process GO:0006629 283 0.014
cellular response to peptide GO:1901653 133 0.014
response to biotic stimulus GO:0009607 226 0.014
carbohydrate homeostasis GO:0033500 75 0.014
receptor metabolic process GO:0043112 18 0.013
protein import GO:0017038 37 0.013
positive regulation of cellular component movement GO:0051272 102 0.013
purine nucleoside triphosphate catabolic process GO:0009146 122 0.013
organic hydroxy compound metabolic process GO:1901615 115 0.013
single organism behavior GO:0044708 130 0.013
nucleotide biosynthetic process GO:0009165 98 0.013
positive regulation of developmental process GO:0051094 283 0.013
cytoplasmic transport GO:0016482 115 0.013
cellular protein complex assembly GO:0043623 44 0.013
purine nucleoside triphosphate metabolic process GO:0009144 141 0.013
regulation of establishment of protein localization GO:0070201 69 0.013
positive regulation of dendrite development GO:1900006 35 0.013
regulation of protein import into nucleus GO:0042306 24 0.013
rab protein signal transduction GO:0032482 1 0.013
regulation of g0 to g1 transition GO:0070316 3 0.013
peptide biosynthetic process GO:0043043 3 0.013
cell cycle process GO:0022402 57 0.013
cellular homeostasis GO:0019725 252 0.013
regulation of body fluid levels GO:0050878 90 0.013
guanosine containing compound catabolic process GO:1901069 71 0.013
regulation of cellular component organization GO:0051128 368 0.013
neurological system process GO:0050877 219 0.013
chemosensory behavior GO:0007635 2 0.013
locomotion GO:0040011 237 0.013
response to monosaccharide GO:0034284 159 0.012
negative regulation of cell death GO:0060548 229 0.012
salivary gland development GO:0007431 3 0.012
regulation of cellular ketone metabolic process GO:0010565 27 0.012
positive regulation of cellular amine metabolic process GO:0033240 3 0.012
positive regulation of neuron differentiation GO:0045666 126 0.012
cellular component maintenance GO:0043954 4 0.012
response to estrogen GO:0043627 232 0.012
endomembrane system organization GO:0010256 48 0.012
positive regulation of nucleotide catabolic process GO:0030813 53 0.012
regulation of small gtpase mediated signal transduction GO:0051056 48 0.012
ubiquitin dependent protein catabolic process GO:0006511 14 0.012
regulation of protein modification process GO:0031399 194 0.012
negative regulation of transcription dna templated GO:0045892 116 0.012
negative regulation of catalytic activity GO:0043086 103 0.012
cell cell signaling involved in cell fate commitment GO:0045168 2 0.012
dna metabolic process GO:0006259 96 0.012
morphogenesis of a polarized epithelium GO:0001738 1 0.012
regulation of protein kinase activity GO:0045859 105 0.012
negative regulation of protein metabolic process GO:0051248 114 0.012
circulatory system process GO:0003013 183 0.012
aging GO:0007568 241 0.012
lipid biosynthetic process GO:0008610 128 0.012
response to hypoxia GO:0001666 231 0.012
negative regulation of innate immune response GO:0045824 4 0.011
protein localization to organelle GO:0033365 57 0.011
multi multicellular organism process GO:0044706 138 0.011
neuromuscular synaptic transmission GO:0007274 2 0.011
negative regulation of transport GO:0051051 136 0.011
carbohydrate derivative biosynthetic process GO:1901137 124 0.011
regulation of dendrite development GO:0050773 59 0.011
protein localization to chromosome centromeric region GO:0071459 1 0.011
positive regulation of neuron projection development GO:0010976 99 0.011
regulation of epithelial cell proliferation GO:0050678 49 0.011
hormone secretion GO:0046879 115 0.011
response to toxic substance GO:0009636 133 0.011
regulation of proteasomal ubiquitin dependent protein catabolic process GO:0032434 3 0.011
multicellular organism growth GO:0035264 1 0.011
positive regulation of response to stimulus GO:0048584 285 0.011
negative regulation of extrinsic apoptotic signaling pathway GO:2001237 4 0.011
negative regulation of cellular component organization GO:0051129 83 0.011
cellular response to hexose stimulus GO:0071331 65 0.011
heart morphogenesis GO:0003007 3 0.011
positive regulation of neuron migration GO:2001224 2 0.011
cytoskeleton dependent cytokinesis GO:0061640 2 0.011
negative regulation of cell development GO:0010721 82 0.011
cytoskeleton organization GO:0007010 111 0.011
spermatogenesis GO:0007283 99 0.011
regulation of reactive oxygen species metabolic process GO:2000377 26 0.011
peptidyl amino acid modification GO:0018193 126 0.011
cell projection morphogenesis GO:0048858 123 0.011
morphogenesis of embryonic epithelium GO:0016331 3 0.011
cellular macromolecular complex assembly GO:0034622 58 0.011
positive regulation of transferase activity GO:0051347 81 0.011
regulation of cellular amine metabolic process GO:0033238 8 0.010
organ formation GO:0048645 3 0.010
brain development GO:0007420 247 0.010
axis specification GO:0009798 4 0.010
reproductive structure development GO:0048608 128 0.010
positive regulation of proteasomal protein catabolic process GO:1901800 3 0.010
negative regulation of programmed cell death GO:0043069 183 0.010
reproductive system development GO:0061458 128 0.010
negative regulation of nucleotide metabolic process GO:0045980 23 0.010
regulation of cell adhesion GO:0030155 52 0.010
cognition GO:0050890 92 0.010

Trim3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease DO term ID Size Probability Func Analog Org
nervous system disease DOID:863 0 0.014
disease of anatomical entity DOID:7 0 0.014
disease of cellular proliferation DOID:14566 0 0.012