Saccharomyces cerevisiae

29 known processes

TRM3 (YDL112W)

Trm3p

TRM3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
organic acid metabolic process GO:0006082 352 0.187
cellular amino acid metabolic process GO:0006520 225 0.147
carbohydrate derivative metabolic process GO:1901135 549 0.142
protein localization to organelle GO:0033365 337 0.130
carboxylic acid biosynthetic process GO:0046394 152 0.128
trna metabolic process GO:0006399 151 0.112
rna methylation GO:0001510 39 0.098
regulation of biological quality GO:0065008 391 0.096
ribose phosphate metabolic process GO:0019693 384 0.088
purine ribonucleoside metabolic process GO:0046128 380 0.084
nucleoside phosphate metabolic process GO:0006753 458 0.081
rna modification GO:0009451 99 0.080
negative regulation of macromolecule metabolic process GO:0010605 375 0.078
trna processing GO:0008033 101 0.075
meiotic cell cycle GO:0051321 272 0.075
glycosyl compound metabolic process GO:1901657 398 0.072
nucleotide metabolic process GO:0009117 453 0.072
carboxylic acid metabolic process GO:0019752 338 0.072
purine nucleotide metabolic process GO:0006163 376 0.072
negative regulation of cell cycle process GO:0010948 86 0.069
macromolecule methylation GO:0043414 85 0.068
cell communication GO:0007154 345 0.065
small molecule biosynthetic process GO:0044283 258 0.065
cell division GO:0051301 205 0.064
nucleobase containing small molecule metabolic process GO:0055086 491 0.062
oxoacid metabolic process GO:0043436 351 0.061
purine ribonucleotide metabolic process GO:0009150 372 0.061
regulation of phosphate metabolic process GO:0019220 230 0.060
rrna metabolic process GO:0016072 244 0.060
establishment of protein localization to organelle GO:0072594 278 0.059
nucleoside monophosphate metabolic process GO:0009123 267 0.059
cell wall organization GO:0071555 146 0.057
cation homeostasis GO:0055080 105 0.056
organophosphate metabolic process GO:0019637 597 0.055
organonitrogen compound catabolic process GO:1901565 404 0.054
negative regulation of gene expression GO:0010629 312 0.054
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.053
negative regulation of nucleic acid templated transcription GO:1903507 260 0.052
signal transduction GO:0007165 208 0.051
regulation of phosphorus metabolic process GO:0051174 230 0.050
single organism catabolic process GO:0044712 619 0.050
ribonucleotide metabolic process GO:0009259 377 0.050
regulation of signaling GO:0023051 119 0.049
response to starvation GO:0042594 96 0.049
purine nucleoside monophosphate metabolic process GO:0009126 262 0.048
macromolecule catabolic process GO:0009057 383 0.047
carbohydrate metabolic process GO:0005975 252 0.047
nucleoside phosphate catabolic process GO:1901292 331 0.047
positive regulation of nucleic acid templated transcription GO:1903508 286 0.046
cellular response to starvation GO:0009267 90 0.046
intracellular protein transport GO:0006886 319 0.045
single organism cellular localization GO:1902580 375 0.044
organic cyclic compound catabolic process GO:1901361 499 0.044
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.042
carbohydrate derivative catabolic process GO:1901136 339 0.042
negative regulation of biosynthetic process GO:0009890 312 0.041
establishment of protein localization GO:0045184 367 0.041
ncrna processing GO:0034470 330 0.041
purine ribonucleoside monophosphate metabolic process GO:0009167 262 0.041
homeostatic process GO:0042592 227 0.041
regulation of response to stimulus GO:0048583 157 0.040
ribonucleoside metabolic process GO:0009119 389 0.039
response to nutrient levels GO:0031667 150 0.039
regulation of phosphorylation GO:0042325 86 0.039
organophosphate catabolic process GO:0046434 338 0.038
proteolysis involved in cellular protein catabolic process GO:0051603 198 0.038
cell cycle phase transition GO:0044770 144 0.038
cellular cation homeostasis GO:0030003 100 0.038
cell wall organization or biogenesis GO:0071554 190 0.037
rrna processing GO:0006364 227 0.036
cellular response to nutrient levels GO:0031669 144 0.036
purine nucleoside metabolic process GO:0042278 380 0.036
nucleoside metabolic process GO:0009116 394 0.036
chromatin silencing GO:0006342 147 0.035
nucleobase containing compound catabolic process GO:0034655 479 0.035
chemical homeostasis GO:0048878 137 0.035
glycosyl compound catabolic process GO:1901658 335 0.035
negative regulation of rna biosynthetic process GO:1902679 260 0.035
regulation of gene expression epigenetic GO:0040029 147 0.035
ribonucleoside catabolic process GO:0042454 332 0.034
protein targeting GO:0006605 272 0.034
regulation of cell cycle GO:0051726 195 0.033
gene silencing GO:0016458 151 0.033
cellular response to external stimulus GO:0071496 150 0.033
purine nucleoside triphosphate catabolic process GO:0009146 329 0.033
response to external stimulus GO:0009605 158 0.033
actin filament based process GO:0030029 104 0.033
protein catabolic process GO:0030163 221 0.032
cellular nitrogen compound catabolic process GO:0044270 494 0.032
nucleus organization GO:0006997 62 0.031
nucleoside triphosphate catabolic process GO:0009143 329 0.031
vesicle mediated transport GO:0016192 335 0.031
cellular lipid metabolic process GO:0044255 229 0.031
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.031
cellular macromolecule catabolic process GO:0044265 363 0.030
methylation GO:0032259 101 0.030
fungal type cell wall organization GO:0031505 145 0.030
purine containing compound metabolic process GO:0072521 400 0.030
negative regulation of cellular biosynthetic process GO:0031327 312 0.029
positive regulation of transcription dna templated GO:0045893 286 0.029
purine nucleotide catabolic process GO:0006195 328 0.029
response to chemical GO:0042221 390 0.028
cellular ion homeostasis GO:0006873 112 0.028
nucleoside catabolic process GO:0009164 335 0.028
regulation of meiosis GO:0040020 42 0.028
translation GO:0006412 230 0.028
purine ribonucleoside triphosphate metabolic process GO:0009205 354 0.027
sulfur compound metabolic process GO:0006790 95 0.027
histone modification GO:0016570 119 0.027
regulation of cellular component organization GO:0051128 334 0.026
ribonucleoside triphosphate catabolic process GO:0009203 327 0.026
macroautophagy GO:0016236 55 0.026
protein transport GO:0015031 345 0.026
regulation of small gtpase mediated signal transduction GO:0051056 47 0.025
signaling GO:0023052 208 0.025
cell differentiation GO:0030154 161 0.025
negative regulation of cellular metabolic process GO:0031324 407 0.025
cellular response to chemical stimulus GO:0070887 315 0.025
heterocycle catabolic process GO:0046700 494 0.025
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.025
chromatin modification GO:0016568 200 0.025
regulation of meiotic cell cycle GO:0051445 43 0.025
organic acid biosynthetic process GO:0016053 152 0.024
autophagy GO:0006914 106 0.024
regulation of organelle organization GO:0033043 243 0.024
intracellular signal transduction GO:0035556 112 0.024
purine ribonucleoside catabolic process GO:0046130 330 0.024
ion homeostasis GO:0050801 118 0.023
ribonucleoside monophosphate metabolic process GO:0009161 265 0.023
protein localization to nucleus GO:0034504 74 0.023
purine nucleoside catabolic process GO:0006152 330 0.023
trna methylation GO:0030488 21 0.023
positive regulation of phosphate metabolic process GO:0045937 147 0.023
posttranscriptional regulation of gene expression GO:0010608 115 0.023
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.023
purine nucleoside triphosphate metabolic process GO:0009144 356 0.023
external encapsulating structure organization GO:0045229 146 0.023
cellular protein complex assembly GO:0043623 209 0.022
single organism signaling GO:0044700 208 0.022
cellular homeostasis GO:0019725 138 0.022
purine ribonucleoside triphosphate catabolic process GO:0009207 327 0.022
phospholipid metabolic process GO:0006644 125 0.022
regulation of cell cycle process GO:0010564 150 0.021
regulation of cell communication GO:0010646 124 0.021
single organism membrane organization GO:0044802 275 0.021
positive regulation of phosphorus metabolic process GO:0010562 147 0.021
negative regulation of meiosis GO:0045835 23 0.021
response to organic cyclic compound GO:0014070 1 0.021
anatomical structure morphogenesis GO:0009653 160 0.020
negative regulation of rna metabolic process GO:0051253 262 0.020
multi organism cellular process GO:0044764 120 0.020
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.020
organonitrogen compound biosynthetic process GO:1901566 314 0.019
protein complex assembly GO:0006461 302 0.019
carbohydrate derivative biosynthetic process GO:1901137 181 0.018
membrane organization GO:0061024 276 0.018
response to abiotic stimulus GO:0009628 159 0.018
glycosyl compound biosynthetic process GO:1901659 42 0.018
ribonucleotide catabolic process GO:0009261 327 0.018
exocytosis GO:0006887 42 0.018
g1 s transition of mitotic cell cycle GO:0000082 64 0.018
regulation of cellular protein metabolic process GO:0032268 232 0.018
ribonucleoside triphosphate metabolic process GO:0009199 356 0.017
regulation of intracellular signal transduction GO:1902531 78 0.017
cellular amino acid biosynthetic process GO:0008652 118 0.017
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.017
nucleoside triphosphate metabolic process GO:0009141 364 0.017
response to heat GO:0009408 69 0.017
negative regulation of meiotic cell cycle GO:0051447 24 0.017
reciprocal meiotic recombination GO:0007131 54 0.017
alpha amino acid biosynthetic process GO:1901607 91 0.017
coenzyme metabolic process GO:0006732 104 0.017
positive regulation of cellular biosynthetic process GO:0031328 336 0.017
single organism carbohydrate metabolic process GO:0044723 237 0.017
regulation of catabolic process GO:0009894 199 0.017
meiotic nuclear division GO:0007126 163 0.016
covalent chromatin modification GO:0016569 119 0.016
regulation of carbohydrate metabolic process GO:0006109 43 0.016
cellular amine metabolic process GO:0044106 51 0.016
positive regulation of rna metabolic process GO:0051254 294 0.016
aromatic compound catabolic process GO:0019439 491 0.016
nucleotide catabolic process GO:0009166 330 0.016
regulation of dna metabolic process GO:0051052 100 0.016
regulation of ras protein signal transduction GO:0046578 47 0.015
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.015
purine ribonucleotide catabolic process GO:0009154 327 0.015
dephosphorylation GO:0016311 127 0.015
positive regulation of gene expression GO:0010628 321 0.015
positive regulation of response to stimulus GO:0048584 37 0.015
double strand break repair GO:0006302 105 0.015
negative regulation of transcription dna templated GO:0045892 258 0.015
purine containing compound catabolic process GO:0072523 332 0.015
positive regulation of biosynthetic process GO:0009891 336 0.015
alpha amino acid metabolic process GO:1901605 124 0.014
cellular response to extracellular stimulus GO:0031668 150 0.014
growth GO:0040007 157 0.014
regulation of catalytic activity GO:0050790 307 0.014
ribonucleoside monophosphate catabolic process GO:0009158 224 0.014
establishment or maintenance of cell polarity GO:0007163 96 0.014
positive regulation of rna biosynthetic process GO:1902680 286 0.014
regulation of translation GO:0006417 89 0.014
actin cytoskeleton organization GO:0030036 100 0.014
secretion GO:0046903 50 0.014
chromatin organization GO:0006325 242 0.014
cellular chemical homeostasis GO:0055082 123 0.013
negative regulation of protein metabolic process GO:0051248 85 0.013
protein complex biogenesis GO:0070271 314 0.013
regulation of nucleotide metabolic process GO:0006140 110 0.013
purine ribonucleoside monophosphate catabolic process GO:0009169 224 0.013
protein targeting to nucleus GO:0044744 57 0.013
purine nucleoside monophosphate catabolic process GO:0009128 224 0.013
water soluble vitamin biosynthetic process GO:0042364 38 0.013
regulation of protein metabolic process GO:0051246 237 0.013
endosomal transport GO:0016197 86 0.013
mitochondrion organization GO:0007005 261 0.013
regulation of cellular component biogenesis GO:0044087 112 0.012
cellular carbohydrate metabolic process GO:0044262 135 0.012
secretion by cell GO:0032940 50 0.012
cellular protein catabolic process GO:0044257 213 0.012
cofactor biosynthetic process GO:0051188 80 0.012
amine metabolic process GO:0009308 51 0.012
multi organism process GO:0051704 233 0.012
proteolysis GO:0006508 268 0.012
lipid metabolic process GO:0006629 269 0.012
small gtpase mediated signal transduction GO:0007264 36 0.012
positive regulation of cellular component organization GO:0051130 116 0.012
response to temperature stimulus GO:0009266 74 0.012
regulation of molecular function GO:0065009 320 0.012
regulation of cellular catabolic process GO:0031329 195 0.012
atp catabolic process GO:0006200 224 0.011
rna catabolic process GO:0006401 118 0.011
polysaccharide metabolic process GO:0005976 60 0.011
conjugation with cellular fusion GO:0000747 106 0.011
mitotic cell cycle phase transition GO:0044772 141 0.011
cellular response to dna damage stimulus GO:0006974 287 0.011
nuclear transcribed mrna catabolic process deadenylation dependent decay GO:0000288 44 0.011
atp metabolic process GO:0046034 251 0.011
phosphorylation GO:0016310 291 0.011
negative regulation of gene expression epigenetic GO:0045814 147 0.011
cofactor metabolic process GO:0051186 126 0.011
reproductive process GO:0022414 248 0.011
regulation of lipid metabolic process GO:0019216 45 0.011
protein deacetylation GO:0006476 26 0.011
positive regulation of cellular catabolic process GO:0031331 128 0.011
meiotic cell cycle process GO:1903046 229 0.010
response to extracellular stimulus GO:0009991 156 0.010
snorna processing GO:0043144 34 0.010
endocytosis GO:0006897 90 0.010
stress activated mapk cascade GO:0051403 4 0.010
guanosine containing compound metabolic process GO:1901068 111 0.010
endomembrane system organization GO:0010256 74 0.010
positive regulation of catabolic process GO:0009896 135 0.010
mrna metabolic process GO:0016071 269 0.010
nucleoside monophosphate catabolic process GO:0009125 224 0.010
anatomical structure development GO:0048856 160 0.010

TRM3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.016
nervous system disease DOID:863 0 0.012