Saccharomyces cerevisiae

9 known processes

SHM2 (YLR058C)

Shm2p

(Aliases: SHMT2)

SHM2 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
alpha amino acid metabolic process GO:1901605 124 0.913
serine family amino acid metabolic process GO:0009069 25 0.830
organic acid metabolic process GO:0006082 352 0.808
oxoacid metabolic process GO:0043436 351 0.755
cellular amino acid metabolic process GO:0006520 225 0.723
carboxylic acid metabolic process GO:0019752 338 0.719
organonitrogen compound biosynthetic process GO:1901566 314 0.696
purine containing compound biosynthetic process GO:0072522 53 0.661
coenzyme metabolic process GO:0006732 104 0.344
purine containing compound metabolic process GO:0072521 400 0.320
small molecule catabolic process GO:0044282 88 0.310
alpha amino acid biosynthetic process GO:1901607 91 0.305
cellular amino acid catabolic process GO:0009063 48 0.275
carboxylic acid biosynthetic process GO:0046394 152 0.234
organic acid biosynthetic process GO:0016053 152 0.230
small molecule biosynthetic process GO:0044283 258 0.211
single organism catabolic process GO:0044712 619 0.206
cellular amino acid biosynthetic process GO:0008652 118 0.193
cofactor metabolic process GO:0051186 126 0.189
nucleobase containing small molecule metabolic process GO:0055086 491 0.179
alpha amino acid catabolic process GO:1901606 28 0.123
carboxylic acid catabolic process GO:0046395 71 0.122
cofactor biosynthetic process GO:0051188 80 0.101
energy derivation by oxidation of organic compounds GO:0015980 125 0.094
organophosphate metabolic process GO:0019637 597 0.082
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.080
positive regulation of macromolecule metabolic process GO:0010604 394 0.071
nucleotide metabolic process GO:0009117 453 0.069
organic acid catabolic process GO:0016054 71 0.065
purine ribonucleoside monophosphate metabolic process GO:0009167 262 0.062
organonitrogen compound catabolic process GO:1901565 404 0.058
monocarboxylic acid metabolic process GO:0032787 122 0.054
purine nucleoside monophosphate metabolic process GO:0009126 262 0.053
purine nucleotide biosynthetic process GO:0006164 41 0.051
purine ribonucleoside monophosphate biosynthetic process GO:0009168 28 0.049
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.045
ribonucleoside monophosphate biosynthetic process GO:0009156 31 0.044
generation of precursor metabolites and energy GO:0006091 147 0.044
nucleotide biosynthetic process GO:0009165 79 0.042
positive regulation of biosynthetic process GO:0009891 336 0.038
organophosphate biosynthetic process GO:0090407 182 0.035
water soluble vitamin biosynthetic process GO:0042364 38 0.034
carbohydrate derivative biosynthetic process GO:1901137 181 0.033
nucleoside phosphate metabolic process GO:0006753 458 0.033
positive regulation of rna metabolic process GO:0051254 294 0.033
ribonucleotide metabolic process GO:0009259 377 0.032
carbohydrate derivative metabolic process GO:1901135 549 0.031
regulation of protein metabolic process GO:0051246 237 0.030
positive regulation of cellular biosynthetic process GO:0031328 336 0.030
cellular response to chemical stimulus GO:0070887 315 0.030
protein folding GO:0006457 94 0.029
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.028
negative regulation of rna biosynthetic process GO:1902679 260 0.027
response to abiotic stimulus GO:0009628 159 0.027
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.026
single organism developmental process GO:0044767 258 0.026
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.025
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.025
coenzyme biosynthetic process GO:0009108 66 0.024
pigment metabolic process GO:0042440 23 0.024
negative regulation of gene expression GO:0010629 312 0.024
positive regulation of transcription dna templated GO:0045893 286 0.023
sexual reproduction GO:0019953 216 0.022
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.022
regulation of organelle organization GO:0033043 243 0.022
positive regulation of gene expression GO:0010628 321 0.022
anatomical structure development GO:0048856 160 0.021
cellular modified amino acid metabolic process GO:0006575 51 0.021
positive regulation of nucleic acid templated transcription GO:1903508 286 0.020
oxidation reduction process GO:0055114 353 0.020
negative regulation of cellular metabolic process GO:0031324 407 0.020
translation GO:0006412 230 0.020
purine nucleoside metabolic process GO:0042278 380 0.019
dicarboxylic acid metabolic process GO:0043648 20 0.019
ribonucleotide biosynthetic process GO:0009260 44 0.018
nuclear transport GO:0051169 165 0.018
regulation of biological quality GO:0065008 391 0.018
purine ribonucleotide metabolic process GO:0009150 372 0.018
ribonucleoside metabolic process GO:0009119 389 0.018
ribosome biogenesis GO:0042254 335 0.017
purine ribonucleotide biosynthetic process GO:0009152 39 0.017
negative regulation of biosynthetic process GO:0009890 312 0.017
purine nucleotide metabolic process GO:0006163 376 0.017
chromosome segregation GO:0007059 159 0.017
developmental process GO:0032502 261 0.017
ribose phosphate biosynthetic process GO:0046390 50 0.017
purine nucleobase metabolic process GO:0006144 11 0.016
nucleoside monophosphate metabolic process GO:0009123 267 0.016
dna replication GO:0006260 147 0.016
nucleoside monophosphate biosynthetic process GO:0009124 33 0.015
cellular respiration GO:0045333 82 0.015
response to nutrient levels GO:0031667 150 0.015
positive regulation of rna biosynthetic process GO:1902680 286 0.015
regulation of catabolic process GO:0009894 199 0.015
negative regulation of macromolecule metabolic process GO:0010605 375 0.015
phosphorylation GO:0016310 291 0.015
cellular response to extracellular stimulus GO:0031668 150 0.015
aromatic compound catabolic process GO:0019439 491 0.014
regulation of cellular ketone metabolic process GO:0010565 42 0.014
ribonucleoside monophosphate metabolic process GO:0009161 265 0.014
aspartate family amino acid metabolic process GO:0009066 40 0.014
regulation of response to stimulus GO:0048583 157 0.013
regulation of intracellular signal transduction GO:1902531 78 0.013
rrna metabolic process GO:0016072 244 0.013
response to chemical GO:0042221 390 0.013
posttranscriptional regulation of gene expression GO:0010608 115 0.013
developmental process involved in reproduction GO:0003006 159 0.013
positive regulation of transcription from rna polymerase ii promoter GO:0045944 252 0.013
cellular protein complex assembly GO:0043623 209 0.013
negative regulation of transcription from rna polymerase ii promoter GO:0000122 137 0.013
regulation of cell cycle process GO:0010564 150 0.012
organelle localization GO:0051640 128 0.012
negative regulation of transcription dna templated GO:0045892 258 0.012
dna dependent dna replication GO:0006261 115 0.012
purine nucleoside monophosphate biosynthetic process GO:0009127 28 0.012
nucleic acid phosphodiester bond hydrolysis GO:0090305 194 0.012
maturation of 5 8s rrna GO:0000460 80 0.012
anatomical structure morphogenesis GO:0009653 160 0.012
ribonucleoside biosynthetic process GO:0042455 37 0.012
mitochondrion organization GO:0007005 261 0.012
response to organic cyclic compound GO:0014070 1 0.012
pyridine nucleotide metabolic process GO:0019362 45 0.012
negative regulation of cellular biosynthetic process GO:0031327 312 0.011
regulation of cellular protein metabolic process GO:0032268 232 0.011
meiotic cell cycle GO:0051321 272 0.011
nucleobase containing compound transport GO:0015931 124 0.011
organelle assembly GO:0070925 118 0.011
cellular amine metabolic process GO:0044106 51 0.011
multi organism reproductive process GO:0044703 216 0.011
imp metabolic process GO:0046040 7 0.011
regulation of cellular catabolic process GO:0031329 195 0.011
response to external stimulus GO:0009605 158 0.011
regulation of translation GO:0006417 89 0.011
purine ribonucleoside metabolic process GO:0046128 380 0.011
response to extracellular stimulus GO:0009991 156 0.010
cellular response to external stimulus GO:0071496 150 0.010
establishment of organelle localization GO:0051656 96 0.010

SHM2 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org