Saccharomyces cerevisiae

37 known processes

SKI3 (YPR189W)

Ski3p

(Aliases: SKI5)

SKI3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
nuclear transcribed mrna catabolic process exonucleolytic 3 5 GO:0034427 11 0.978
mrna metabolic process GO:0016071 269 0.869
nuclear transcribed mrna catabolic process 3 5 exonucleolytic nonsense mediated decay GO:0070478 8 0.862
aromatic compound catabolic process GO:0019439 491 0.860
nuclear transcribed mrna catabolic process exonucleolytic GO:0000291 12 0.841
organic cyclic compound catabolic process GO:1901361 499 0.725
heterocycle catabolic process GO:0046700 494 0.688
nuclear transcribed mrna catabolic process GO:0000956 89 0.652
cellular nitrogen compound catabolic process GO:0044270 494 0.593
mrna catabolic process GO:0006402 93 0.589
rna catabolic process GO:0006401 118 0.536
nucleobase containing compound catabolic process GO:0034655 479 0.509
vesicle mediated transport GO:0016192 335 0.477
nuclear transcribed mrna catabolic process deadenylation dependent decay GO:0000288 44 0.436
regulation of cellular component organization GO:0051128 334 0.398
negative regulation of gene expression GO:0010629 312 0.371
regulation of gene expression epigenetic GO:0040029 147 0.356
exonucleolytic nuclear transcribed mrna catabolic process involved in deadenylation dependent decay GO:0043928 8 0.328
nuclear transcribed mrna catabolic process nonsense mediated decay GO:0000184 15 0.313
negative regulation of rna metabolic process GO:0051253 262 0.291
mitochondrion organization GO:0007005 261 0.289
cellular macromolecule catabolic process GO:0044265 363 0.286
chromatin silencing GO:0006342 147 0.285
gene silencing GO:0016458 151 0.250
chromatin silencing at telomere GO:0006348 84 0.239
golgi vesicle transport GO:0048193 188 0.239
protein complex assembly GO:0006461 302 0.203
nucleic acid phosphodiester bond hydrolysis GO:0090305 194 0.197
protein complex biogenesis GO:0070271 314 0.194
cellular response to dna damage stimulus GO:0006974 287 0.186
positive regulation of nucleobase containing compound metabolic process GO:0045935 409 0.184
rna splicing via transesterification reactions with bulged adenosine as nucleophile GO:0000377 109 0.184
endosomal transport GO:0016197 86 0.175
negative regulation of macromolecule metabolic process GO:0010605 375 0.175
signaling GO:0023052 208 0.174
macromolecule catabolic process GO:0009057 383 0.173
rna splicing via transesterification reactions GO:0000375 118 0.149
negative regulation of macromolecule biosynthetic process GO:0010558 291 0.145
ncrna processing GO:0034470 330 0.143
negative regulation of gene expression epigenetic GO:0045814 147 0.140
nucleobase containing small molecule metabolic process GO:0055086 491 0.140
purine ribonucleotide metabolic process GO:0009150 372 0.136
maturation of 5 8s rrna GO:0000460 80 0.136
nucleoside metabolic process GO:0009116 394 0.126
rna surveillance GO:0071025 30 0.126
rna phosphodiester bond hydrolysis GO:0090501 112 0.125
purine nucleoside metabolic process GO:0042278 380 0.120
dna templated transcription initiation GO:0006352 71 0.119
mrna processing GO:0006397 185 0.117
nucleoside triphosphate catabolic process GO:0009143 329 0.116
positive regulation of macromolecule metabolic process GO:0010604 394 0.113
negative regulation of transcription dna templated GO:0045892 258 0.112
cell communication GO:0007154 345 0.108
negative regulation of cellular metabolic process GO:0031324 407 0.108
single organism signaling GO:0044700 208 0.107
rrna metabolic process GO:0016072 244 0.103
cell division GO:0051301 205 0.103
purine ribonucleotide catabolic process GO:0009154 327 0.102
rna splicing GO:0008380 131 0.098
negative regulation of nucleic acid templated transcription GO:1903507 260 0.098
cytoskeleton organization GO:0007010 230 0.096
single organism catabolic process GO:0044712 619 0.096
purine containing compound catabolic process GO:0072523 332 0.095
retrograde transport endosome to golgi GO:0042147 33 0.091
positive regulation of transcription dna templated GO:0045893 286 0.090
regulation of dna templated transcription initiation GO:2000142 19 0.089
positive regulation of nucleic acid templated transcription GO:1903508 286 0.087
rrna processing GO:0006364 227 0.086
purine nucleotide metabolic process GO:0006163 376 0.086
dna templated transcription elongation GO:0006354 91 0.086
positive regulation of macromolecule biosynthetic process GO:0010557 325 0.084
negative regulation of cellular macromolecule biosynthetic process GO:2000113 289 0.083
glycosyl compound metabolic process GO:1901657 398 0.083
positive regulation of cellular biosynthetic process GO:0031328 336 0.082
purine ribonucleoside metabolic process GO:0046128 380 0.080
purine nucleoside monophosphate metabolic process GO:0009126 262 0.077
nucleoside phosphate metabolic process GO:0006753 458 0.077
purine ribonucleoside triphosphate catabolic process GO:0009207 327 0.076
transcription initiation from rna polymerase ii promoter GO:0006367 55 0.075
nucleoside phosphate catabolic process GO:1901292 331 0.075
response to starvation GO:0042594 96 0.072
carbohydrate derivative metabolic process GO:1901135 549 0.072
regulation of cellular component biogenesis GO:0044087 112 0.071
rrna catabolic process GO:0016075 31 0.071
ncrna 3 end processing GO:0043628 44 0.071
nuclear polyadenylation dependent rrna catabolic process GO:0071035 18 0.067
purine containing compound metabolic process GO:0072521 400 0.066
response to extracellular stimulus GO:0009991 156 0.065
regulation of intracellular signal transduction GO:1902531 78 0.064
regulation of catalytic activity GO:0050790 307 0.064
ncrna catabolic process GO:0034661 33 0.064
positive regulation of transcription from rna polymerase ii promoter GO:0045944 252 0.063
regulation of phosphate metabolic process GO:0019220 230 0.062
purine nucleoside triphosphate catabolic process GO:0009146 329 0.062
regulation of transcription initiation from rna polymerase ii promoter GO:0060260 19 0.061
regulation of response to stimulus GO:0048583 157 0.060
purine nucleoside triphosphate metabolic process GO:0009144 356 0.060
negative regulation of nitrogen compound metabolic process GO:0051172 300 0.059
regulation of transcription from rna polymerase ii promoter GO:0006357 394 0.059
nucleoside catabolic process GO:0009164 335 0.059
nucleotide catabolic process GO:0009166 330 0.059
purine ribonucleoside triphosphate metabolic process GO:0009205 354 0.058
cellular ketone metabolic process GO:0042180 63 0.058
cellular response to extracellular stimulus GO:0031668 150 0.057
protein dna complex assembly GO:0065004 105 0.057
negative regulation of cell division GO:0051782 66 0.057
membrane organization GO:0061024 276 0.056
atp catabolic process GO:0006200 224 0.056
ribonucleotide catabolic process GO:0009261 327 0.055
signal transduction GO:0007165 208 0.055
negative regulation of cellular component organization GO:0051129 109 0.055
positive regulation of cellular component organization GO:0051130 116 0.054
ribonucleoside triphosphate catabolic process GO:0009203 327 0.054
carbohydrate metabolic process GO:0005975 252 0.053
regulation of gene silencing GO:0060968 41 0.053
regulation of protein complex assembly GO:0043254 77 0.053
negative regulation of nuclear division GO:0051784 62 0.053
ribonucleoside monophosphate metabolic process GO:0009161 265 0.053
regulation of meiotic cell cycle GO:0051445 43 0.052
macroautophagy GO:0016236 55 0.052
positive regulation of nitrogen compound metabolic process GO:0051173 412 0.052
ribonucleotide metabolic process GO:0009259 377 0.052
cellular response to external stimulus GO:0071496 150 0.051
nuclear mrna surveillance GO:0071028 22 0.051
purine nucleoside catabolic process GO:0006152 330 0.051
purine ribonucleoside catabolic process GO:0046130 330 0.050
negative regulation of rna biosynthetic process GO:1902679 260 0.050
regulation of chromatin silencing GO:0031935 39 0.048
ribonucleoside catabolic process GO:0042454 332 0.047
carbohydrate derivative catabolic process GO:1901136 339 0.046
regulation of organelle organization GO:0033043 243 0.046
intracellular signal transduction GO:0035556 112 0.046
negative regulation of nucleobase containing compound metabolic process GO:0045934 295 0.045
single organism cellular localization GO:1902580 375 0.045
regulation of translation GO:0006417 89 0.044
regulation of response to stress GO:0080134 57 0.044
regulation of molecular function GO:0065009 320 0.044
purine nucleotide catabolic process GO:0006195 328 0.042
positive regulation of catalytic activity GO:0043085 178 0.039
response to chemical GO:0042221 390 0.039
ribose phosphate metabolic process GO:0019693 384 0.039
dna packaging GO:0006323 55 0.039
response to external stimulus GO:0009605 158 0.039
positive regulation of rna metabolic process GO:0051254 294 0.038
regulation of chromatin organization GO:1902275 23 0.038
establishment of protein localization to membrane GO:0090150 99 0.037
purine ribonucleoside monophosphate catabolic process GO:0009169 224 0.037
positive regulation of cell communication GO:0010647 28 0.036
response to nutrient levels GO:0031667 150 0.036
cellular response to starvation GO:0009267 90 0.036
positive regulation of rna biosynthetic process GO:1902680 286 0.036
negative regulation of meiosis GO:0045835 23 0.035
carboxylic acid metabolic process GO:0019752 338 0.035
peptidyl amino acid modification GO:0018193 116 0.034
ribonucleoside metabolic process GO:0009119 389 0.034
response to organic cyclic compound GO:0014070 1 0.034
organonitrogen compound catabolic process GO:1901565 404 0.034
endomembrane system organization GO:0010256 74 0.033
nucleotide metabolic process GO:0009117 453 0.033
late endosome to vacuole transport GO:0045324 42 0.032
organophosphate catabolic process GO:0046434 338 0.032
gene silencing by rna GO:0031047 3 0.031
meiotic nuclear division GO:0007126 163 0.031
positive regulation of biosynthetic process GO:0009891 336 0.030
positive regulation of gene expression GO:0010628 321 0.030
atp metabolic process GO:0046034 251 0.029
glycosyl compound catabolic process GO:1901658 335 0.029
termination of rna polymerase ii transcription GO:0006369 26 0.029
regulation of purine nucleotide metabolic process GO:1900542 109 0.028
ribonucleoside monophosphate catabolic process GO:0009158 224 0.028
negative regulation of organelle organization GO:0010639 103 0.028
nuclear polyadenylation dependent ncrna catabolic process GO:0071046 20 0.028
cellular carbohydrate metabolic process GO:0044262 135 0.028
negative regulation of cellular biosynthetic process GO:0031327 312 0.028
regulation of translational initiation GO:0006446 18 0.027
nucleoside monophosphate metabolic process GO:0009123 267 0.027
regulation of mrna splicing via spliceosome GO:0048024 3 0.027
establishment of protein localization to organelle GO:0072594 278 0.027
nucleotide excision repair GO:0006289 50 0.026
single organism carbohydrate metabolic process GO:0044723 237 0.026
chromatin modification GO:0016568 200 0.025
regulation of rna splicing GO:0043484 3 0.025
nucleus organization GO:0006997 62 0.025
dna conformation change GO:0071103 98 0.025
regulation of dna templated transcription elongation GO:0032784 44 0.025
organophosphate metabolic process GO:0019637 597 0.025
nucleoside monophosphate catabolic process GO:0009125 224 0.024
early endosome to golgi transport GO:0034498 11 0.024
trna metabolic process GO:0006399 151 0.024
rna localization GO:0006403 112 0.023
guanosine containing compound metabolic process GO:1901068 111 0.023
macromolecule methylation GO:0043414 85 0.023
meiotic cell cycle GO:0051321 272 0.023
posttranscriptional regulation of gene expression GO:0010608 115 0.023
regulation of chromatin modification GO:1903308 23 0.023
regulation of cellular amino acid metabolic process GO:0006521 16 0.022
amine metabolic process GO:0009308 51 0.022
protein modification by small protein conjugation GO:0032446 144 0.022
multi organism process GO:0051704 233 0.022
negative regulation of biosynthetic process GO:0009890 312 0.022
positive regulation of intracellular signal transduction GO:1902533 16 0.022
regulation of nucleoside metabolic process GO:0009118 106 0.022
polyadenylation dependent ncrna catabolic process GO:0043634 20 0.022
positive regulation of dna templated transcription elongation GO:0032786 42 0.021
purine nucleoside monophosphate catabolic process GO:0009128 224 0.021
organic acid metabolic process GO:0006082 352 0.021
ribosomal small subunit biogenesis GO:0042274 124 0.021
regulation of signaling GO:0023051 119 0.021
cell cycle g1 s phase transition GO:0044843 64 0.021
regulation of hydrolase activity GO:0051336 133 0.021
regulation of purine nucleotide catabolic process GO:0033121 106 0.021
regulation of cellular amine metabolic process GO:0033238 21 0.020
oxoacid metabolic process GO:0043436 351 0.020
transcription elongation from rna polymerase ii promoter GO:0006368 81 0.020
regulation of phosphorus metabolic process GO:0051174 230 0.020
snorna metabolic process GO:0016074 40 0.020
response to abiotic stimulus GO:0009628 159 0.020
positive regulation of phosphorus metabolic process GO:0010562 147 0.020
positive regulation of catabolic process GO:0009896 135 0.020
regulation of phosphorylation GO:0042325 86 0.019
covalent chromatin modification GO:0016569 119 0.019
maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna GO:0000466 80 0.019
regulation of cell communication GO:0010646 124 0.019
ribonucleoside triphosphate metabolic process GO:0009199 356 0.019
positive regulation of transcription elongation from rna polymerase ii promoter GO:0032968 38 0.019
positive regulation of cellular component biogenesis GO:0044089 45 0.019
positive regulation of cellular protein metabolic process GO:0032270 89 0.018
positive regulation of purine nucleotide metabolic process GO:1900544 100 0.018
nucleoside triphosphate metabolic process GO:0009141 364 0.018
polyadenylation dependent rna catabolic process GO:0043633 22 0.018
mapk cascade GO:0000165 30 0.018
protein ubiquitination GO:0016567 118 0.018
cell development GO:0048468 107 0.017
nuclear rna surveillance GO:0071027 30 0.017
regulation of cellular catabolic process GO:0031329 195 0.017
protein localization to organelle GO:0033365 337 0.017
regulation of nuclear division GO:0051783 103 0.017
modification dependent macromolecule catabolic process GO:0043632 203 0.017
cellular amine metabolic process GO:0044106 51 0.017
regulation of nucleotide catabolic process GO:0030811 106 0.016
protein alkylation GO:0008213 48 0.016
gtp catabolic process GO:0006184 107 0.016
negative regulation of cell cycle GO:0045786 91 0.015
regulation of chromatin silencing at telomere GO:0031938 27 0.015
secretion by cell GO:0032940 50 0.015
lipid localization GO:0010876 60 0.014
cellular protein complex assembly GO:0043623 209 0.014
snorna processing GO:0043144 34 0.014
methylation GO:0032259 101 0.014
posttranscriptional tethering of rna polymerase ii gene dna at nuclear periphery GO:0000973 16 0.014
histone modification GO:0016570 119 0.014
protein methylation GO:0006479 48 0.014
positive regulation of purine nucleotide catabolic process GO:0033123 97 0.014
positive regulation of gene expression epigenetic GO:0045815 25 0.014
dna templated transcriptional start site selection GO:0001173 7 0.014
nuclear transcribed mrna catabolic process non stop decay GO:0070481 11 0.014
regulation of chromosome organization GO:0033044 66 0.014
ribosome biogenesis GO:0042254 335 0.014
macromolecular complex disassembly GO:0032984 80 0.013
positive regulation of phosphorylation GO:0042327 33 0.013
regulation of cellular protein metabolic process GO:0032268 232 0.013
membrane fusion GO:0061025 73 0.013
positive regulation of protein metabolic process GO:0051247 93 0.013
chromatin silencing at rdna GO:0000183 32 0.013
regulation of small gtpase mediated signal transduction GO:0051056 47 0.012
transcriptional start site selection at rna polymerase ii promoter GO:0001174 7 0.012
sporulation resulting in formation of a cellular spore GO:0030435 129 0.012
regulation of cell cycle GO:0051726 195 0.012
cellular protein complex disassembly GO:0043624 42 0.012
stress activated protein kinase signaling cascade GO:0031098 4 0.012
protein targeting to membrane GO:0006612 52 0.011
positive regulation of cellular amino acid metabolic process GO:0045764 7 0.011
protein acylation GO:0043543 66 0.011
positive regulation of hydrolase activity GO:0051345 112 0.011
positive regulation of response to stimulus GO:0048584 37 0.011
protein catabolic process GO:0030163 221 0.011
regulation of cellular ketone metabolic process GO:0010565 42 0.011
cellular response to abiotic stimulus GO:0071214 62 0.011
cellular response to chemical stimulus GO:0070887 315 0.011
guanosine containing compound catabolic process GO:1901069 109 0.011
ribonucleoprotein complex localization GO:0071166 46 0.011
monocarboxylic acid metabolic process GO:0032787 122 0.011
regulation of transcription elongation from rna polymerase ii promoter GO:0034243 40 0.010
microtubule based process GO:0007017 117 0.010
regulation of biological quality GO:0065008 391 0.010
snorna 3 end processing GO:0031126 21 0.010
small gtpase mediated signal transduction GO:0007264 36 0.010
mitotic cell cycle process GO:1903047 294 0.010
regulation of gtp catabolic process GO:0033124 84 0.010
trna catabolic process GO:0016078 16 0.010
regulation of meiosis GO:0040020 42 0.010
microtubule cytoskeleton organization GO:0000226 109 0.010
localization within membrane GO:0051668 29 0.010
cellular developmental process GO:0048869 191 0.010
positive regulation of signaling GO:0023056 20 0.010

SKI3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in yeast and predicted with the yeast functional network.

Disease DO term ID Size Probability Func Analog Org