Danio rerio

0 known processes

lysmd3

LysM, putative peptidoglycan-binding, domain containing 3

(Aliases: sb:cb462,wu:fb75a04,zgc:86877)

lysmd3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
golgi vesicle transport GO:0048193 3 0.161
cellular protein catabolic process GO:0044257 4 0.151
larval development GO:0002164 2 0.108
response to stress GO:0006950 263 0.089
locomotion GO:0040011 313 0.088
cellular biosynthetic process GO:0044249 286 0.088
proteasomal protein catabolic process GO:0010498 2 0.088
ubiquitin dependent protein catabolic process GO:0006511 3 0.086
er to golgi vesicle mediated transport GO:0006888 1 0.082
modification dependent protein catabolic process GO:0019941 3 0.079
biosynthetic process GO:0009058 294 0.077
regulation of biosynthetic process GO:0009889 250 0.077
organic substance biosynthetic process GO:1901576 289 0.076
macromolecule biosynthetic process GO:0009059 227 0.074
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.072
negative regulation of protein kinase activity GO:0006469 4 0.072
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.069
regulation of signaling GO:0023051 235 0.068
nitrogen compound metabolic process GO:0006807 319 0.068
cellular macromolecule metabolic process GO:0044260 391 0.066
cell migration GO:0016477 237 0.064
positive regulation of catabolic process GO:0009896 4 0.063
regulation of metabolic process GO:0019222 359 0.061
cellular nitrogen compound metabolic process GO:0034641 290 0.060
cellular protein modification process GO:0006464 100 0.054
single organism transport GO:0044765 206 0.053
cellular component morphogenesis GO:0032989 336 0.053
cell part morphogenesis GO:0032990 246 0.052
negative regulation of protein phosphorylation GO:0001933 4 0.051
skeletal system development GO:0001501 181 0.050
positive regulation of cellular catabolic process GO:0031331 3 0.050
maintenance of location GO:0051235 4 0.050
regionalization GO:0003002 274 0.049
signal transduction GO:0007165 455 0.049
cell projection organization GO:0030030 284 0.048
negative regulation of cellular process GO:0048523 283 0.047
positive regulation of metabolic process GO:0009893 108 0.047
aging GO:0007568 2 0.047
negative regulation of signal transduction GO:0009968 94 0.047
regulation of cell communication GO:0010646 232 0.046
modification dependent macromolecule catabolic process GO:0043632 3 0.046
regulation of cellular metabolic process GO:0031323 320 0.046
cellular component movement GO:0006928 335 0.045
microtubule organizing center organization GO:0031023 1 0.044
single organism metabolic process GO:0044710 217 0.044
gtp metabolic process GO:0046039 4 0.043
apoptotic process GO:0006915 116 0.043
programmed cell death GO:0012501 119 0.042
single organism localization GO:1902578 225 0.042
transport GO:0006810 220 0.042
regulation of macromolecule metabolic process GO:0060255 317 0.041
regulation of nitrogen compound metabolic process GO:0051171 251 0.038
lipid storage GO:0019915 1 0.038
regulation of protein catabolic process GO:0042176 1 0.038
morphogenesis of an epithelium GO:0002009 333 0.037
embryo development ending in birth or egg hatching GO:0009792 271 0.036
organic cyclic compound metabolic process GO:1901360 301 0.036
protein metabolic process GO:0019538 183 0.036
regulation of protein complex assembly GO:0043254 3 0.035
establishment of protein localization to organelle GO:0072594 4 0.035
organelle organization GO:0006996 227 0.034
cellular macromolecule biosynthetic process GO:0034645 224 0.034
ear development GO:0043583 127 0.034
positive regulation of biological process GO:0048518 253 0.033
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 1 0.033
protein targeting to membrane GO:0006612 1 0.033
cell morphogenesis GO:0000902 289 0.033
head development GO:0060322 303 0.032
localization of cell GO:0051674 244 0.032
regulation of nucleoside metabolic process GO:0009118 2 0.032
regulation of response to stimulus GO:0048583 269 0.031
establishment of localization GO:0051234 244 0.031
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.031
positive regulation of purine nucleotide catabolic process GO:0033123 1 0.031
inner ear development GO:0048839 126 0.031
nucleobase containing compound metabolic process GO:0006139 274 0.030
single organism organelle organization GO:1902589 199 0.030
negative regulation of kinase activity GO:0033673 4 0.029
regulation of cell death GO:0010941 103 0.029
positive regulation of cellular process GO:0048522 201 0.029
extrinsic apoptotic signaling pathway GO:0097191 3 0.029
regulation of nucleotide catabolic process GO:0030811 2 0.029
intracellular signal transduction GO:0035556 85 0.028
nucleocytoplasmic transport GO:0006913 4 0.028
stem cell division GO:0017145 1 0.028
regulation of primary metabolic process GO:0080090 311 0.028
negative regulation of response to stimulus GO:0048585 104 0.027
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.027
central nervous system development GO:0007417 387 0.027
positive regulation of gtp catabolic process GO:0033126 1 0.027
regulation of signal transduction GO:0009966 225 0.027
regulation of cellular protein catabolic process GO:1903362 1 0.027
glucose homeostasis GO:0042593 1 0.027
regulation of extrinsic apoptotic signaling pathway GO:2001236 3 0.026
multi organism process GO:0051704 134 0.026
brain development GO:0007420 293 0.026
growth GO:0040007 174 0.026
negative regulation of catabolic process GO:0009895 3 0.026
protein dephosphorylation GO:0006470 3 0.026
heterocycle metabolic process GO:0046483 290 0.026
cell surface receptor signaling pathway GO:0007166 325 0.025
regulation of apoptotic process GO:0042981 98 0.025
negative regulation of cell communication GO:0010648 96 0.025
cellular aromatic compound metabolic process GO:0006725 295 0.025
cellular response to extracellular stimulus GO:0031668 2 0.024
negative regulation of cellular catabolic process GO:0031330 3 0.024
phagocytosis GO:0006909 3 0.024
skeletal system morphogenesis GO:0048705 102 0.024
generation of neurons GO:0048699 385 0.024
regulation of programmed cell death GO:0043067 101 0.024
positive regulation of transport GO:0051050 2 0.024
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.023
centrosome cycle GO:0007098 1 0.023
regulation of cellular biosynthetic process GO:0031326 245 0.023
sensory perception GO:0007600 39 0.023
cellular protein metabolic process GO:0044267 129 0.023
cell projection morphogenesis GO:0048858 244 0.022
embryonic organ morphogenesis GO:0048562 274 0.022
negative regulation of extrinsic apoptotic signaling pathway GO:2001237 2 0.022
cellular response to stress GO:0033554 62 0.022
regulation of biological quality GO:0065008 263 0.021
aromatic compound biosynthetic process GO:0019438 217 0.021
cellular modified amino acid metabolic process GO:0006575 3 0.021
response to glucocorticoid GO:0051384 1 0.021
regulation of intracellular signal transduction GO:1902531 57 0.021
b cell activation GO:0042113 2 0.021
positive regulation of cellular carbohydrate metabolic process GO:0010676 1 0.021
positive regulation of nucleobase containing compound metabolic process GO:0045935 69 0.021
centrosome organization GO:0051297 1 0.020
phosphate containing compound metabolic process GO:0006796 108 0.020
response to chemical GO:0042221 320 0.020
protein modification process GO:0036211 100 0.020
guanosine containing compound catabolic process GO:1901069 2 0.020
hormone secretion GO:0046879 2 0.019
nuclear import GO:0051170 3 0.019
cellular response to external stimulus GO:0071496 2 0.019
neuron projection morphogenesis GO:0048812 161 0.019
visual perception GO:0007601 17 0.019
negative regulation of biological process GO:0048519 304 0.019
cellular catabolic process GO:0044248 27 0.019
carbohydrate derivative metabolic process GO:1901135 61 0.019
response to nutrient GO:0007584 3 0.018
response to carbohydrate GO:0009743 3 0.018
regulation of protein ubiquitination GO:0031396 3 0.018
guanosine containing compound metabolic process GO:1901068 4 0.018
gtp catabolic process GO:0006184 2 0.018
cellular nitrogen compound biosynthetic process GO:0044271 218 0.018
autophagy GO:0006914 4 0.018
regulation of hormone secretion GO:0046883 2 0.018
regulation of multicellular organism growth GO:0040014 4 0.018
regulation of gtpase activity GO:0043087 2 0.018
negative regulation of signaling GO:0023057 96 0.018
system process GO:0003008 185 0.018
neurological system process GO:0050877 62 0.018
b cell differentiation GO:0030183 1 0.017
regulation of gtp catabolic process GO:0033124 2 0.017
chemosensory behavior GO:0007635 1 0.017
regulation of macromolecule biosynthetic process GO:0010556 225 0.017
cellular response to radiation GO:0071478 4 0.017
establishment of localization in cell GO:0051649 77 0.017
alcohol biosynthetic process GO:0046165 2 0.017
death GO:0016265 121 0.017
protein polyubiquitination GO:0000209 4 0.017
cell motility GO:0048870 244 0.017
positive regulation of nucleotide catabolic process GO:0030813 1 0.017
rhodopsin mediated signaling pathway GO:0016056 1 0.017
cellular monovalent inorganic cation homeostasis GO:0030004 2 0.017
fin development GO:0033333 77 0.017
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress GO:0070059 3 0.017
blood vessel development GO:0001568 246 0.017
hormone transport GO:0009914 2 0.017
cell cycle g1 s phase transition GO:0044843 1 0.016
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.016
regulation of transcription dna templated GO:0006355 213 0.016
cellular response to starvation GO:0009267 1 0.016
hematopoietic or lymphoid organ development GO:0048534 191 0.016
positive regulation of gtpase activity GO:0043547 1 0.016
regulation of nucleic acid templated transcription GO:1903506 213 0.016
neuron differentiation GO:0030182 353 0.016
meiotic cell cycle process GO:1903046 3 0.015
transcription from rna polymerase ii promoter GO:0006366 80 0.015
carbohydrate homeostasis GO:0033500 1 0.015
lens fiber cell development GO:0070307 3 0.015
enzyme linked receptor protein signaling pathway GO:0007167 106 0.015
regulation of cytoplasmic transport GO:1903649 4 0.015
regulation of metal ion transport GO:0010959 4 0.015
nucleic acid metabolic process GO:0090304 244 0.015
gene expression GO:0010467 252 0.014
forebrain cell migration GO:0021885 1 0.014
negative regulation of mapk cascade GO:0043409 4 0.014
response to endogenous stimulus GO:0009719 83 0.014
response to amino acid GO:0043200 2 0.014
transmembrane transport GO:0055085 120 0.014
regulation of multicellular organismal development GO:2000026 223 0.014
cell death GO:0008219 121 0.014
oxoacid metabolic process GO:0043436 31 0.014
negative regulation of apoptotic process GO:0043066 55 0.014
immune system process GO:0002376 241 0.014
vasculature development GO:0001944 278 0.014
regulation of phosphate metabolic process GO:0019220 43 0.014
positive regulation of biosynthetic process GO:0009891 68 0.014
nuclear export GO:0051168 1 0.014
nuclear transport GO:0051169 4 0.014
negative regulation of autophagy GO:0010507 1 0.014
immune system development GO:0002520 191 0.014
regulation of developmental process GO:0050793 247 0.013
carboxylic acid metabolic process GO:0019752 22 0.013
triglyceride homeostasis GO:0070328 2 0.013
negative regulation of response to cytokine stimulus GO:0060761 2 0.013
meiotic nuclear division GO:0007126 4 0.013
multicellular organismal response to stress GO:0033555 2 0.013
homeostatic process GO:0042592 142 0.013
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.013
protein heterooligomerization GO:0051291 1 0.013
cellular component biogenesis GO:0044085 178 0.013
regulation of blood vessel size GO:0050880 2 0.013
primary neural tube formation GO:0014020 1 0.013
positive regulation of cellular metabolic process GO:0031325 94 0.013
regulation of dna replication GO:0006275 3 0.013
positive regulation of macromolecule metabolic process GO:0010604 93 0.012
hormone biosynthetic process GO:0042446 3 0.012
response to glucose GO:0009749 3 0.012
epithelium migration GO:0090132 25 0.012
sensory organ development GO:0007423 393 0.012
response to corticosteroid GO:0031960 1 0.012
sensory perception of chemical stimulus GO:0007606 3 0.012
organonitrogen compound metabolic process GO:1901564 74 0.012
purine containing compound metabolic process GO:0072521 29 0.012
reproductive process GO:0022414 40 0.012
cellular response to topologically incorrect protein GO:0035967 2 0.012
embryonic skeletal system development GO:0048706 97 0.012
positive regulation of nucleic acid templated transcription GO:1903508 57 0.012
regulation of protein polymerization GO:0032271 2 0.012
sensory perception of smell GO:0007608 2 0.012
regulation of multicellular organismal process GO:0051239 277 0.011
segmentation GO:0035282 97 0.011
cellular localization GO:0051641 97 0.011
regulation of protein import into nucleus GO:0042306 2 0.011
positive regulation of protein complex assembly GO:0031334 2 0.011
positive regulation of cell cycle GO:0045787 3 0.011
cellular aldehyde metabolic process GO:0006081 4 0.011
single organism nuclear import GO:1902593 3 0.011
cytokinesis GO:0000910 3 0.011
multicellular organism growth GO:0035264 4 0.011
positive regulation of camp metabolic process GO:0030816 2 0.011
regulation of purine nucleotide catabolic process GO:0033121 2 0.011
mesenchyme development GO:0060485 127 0.011
regulation of catalytic activity GO:0050790 55 0.011
regulation of cell activation GO:0050865 1 0.011
g1 s transition of mitotic cell cycle GO:0000082 1 0.011
regulation of ph GO:0006885 3 0.011
muscle cell development GO:0055001 115 0.011
cellular amino acid metabolic process GO:0006520 7 0.011
response to external stimulus GO:0009605 264 0.011
rna biosynthetic process GO:0032774 181 0.011
adult behavior GO:0030534 2 0.011
synaptic growth at neuromuscular junction GO:0051124 2 0.011
positive regulation of secretion by cell GO:1903532 1 0.011
nucleobase containing compound biosynthetic process GO:0034654 205 0.011
striated muscle cell differentiation GO:0051146 129 0.011
regulation of dna templated transcription elongation GO:0032784 3 0.011
embryonic limb morphogenesis GO:0030326 2 0.011
localization within membrane GO:0051668 1 0.011
organic acid metabolic process GO:0006082 31 0.011
muscle organ development GO:0007517 101 0.010
golgi organization GO:0007030 1 0.010
small gtpase mediated signal transduction GO:0007264 8 0.010
neuron development GO:0048666 262 0.010
interaction with host GO:0051701 4 0.010
response to organic substance GO:0010033 153 0.010
positive regulation of cell adhesion GO:0045785 1 0.010
single organism biosynthetic process GO:0044711 71 0.010
protein polymerization GO:0051258 4 0.010
regulation of ion transmembrane transporter activity GO:0032412 2 0.010
signal transduction in absence of ligand GO:0038034 1 0.010
regulation of phosphorus metabolic process GO:0051174 43 0.010
alpha amino acid metabolic process GO:1901605 3 0.010
positive regulation of cellular component biogenesis GO:0044089 3 0.010
cellular amine metabolic process GO:0044106 2 0.010
intracellular transport GO:0046907 32 0.010
catabolic process GO:0009056 32 0.010
locomotor rhythm GO:0045475 3 0.010

lysmd3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
cancer DOID:162 0 0.032
disease of cellular proliferation DOID:14566 0 0.032
organ system cancer DOID:0050686 0 0.020
disease of anatomical entity DOID:7 0 0.012
nervous system disease DOID:863 0 0.012