Danio rerio

26 known processes

rho

rhodopsin

(Aliases: wu:fi06d11,RH1,zfrho,zfo2,fi06d11,Rh)

rho biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
phototransduction GO:0007602 2 0.998
Zebrafish Mouse Rat
phototransduction visible light GO:0007603 2 0.980
Zebrafish Rat
photoperiodism GO:0009648 11 0.978
Zebrafish
detection of visible light GO:0009584 12 0.894
rhodopsin mediated signaling pathway GO:0016056 1 0.819
Zebrafish Rat
regulation of sequestering of calcium ion GO:0051282 4 0.780
Zebrafish
cellular response to light stimulus GO:0071482 4 0.756
Zebrafish Mouse Rat
response to radiation GO:0009314 51 0.717
detection of light stimulus GO:0009583 12 0.659
g protein coupled receptor signaling pathway GO:0007186 74 0.645
eye morphogenesis GO:0048592 144 0.607
detection of stimulus GO:0051606 29 0.594
organic substance biosynthetic process GO:1901576 289 0.592
cellular response to radiation GO:0071478 4 0.573
Zebrafish Mouse Rat
response to light stimulus GO:0009416 46 0.563
absorption of visible light GO:0016038 2 0.562
light induced release of internally sequestered calcium ion GO:0008377 1 0.560
Zebrafish
light absorption GO:0016037 2 0.558
signal transduction GO:0007165 455 0.552
negative regulation of cellular process GO:0048523 283 0.534
Zebrafish
sequestering of metal ion GO:0051238 3 0.528
Zebrafish
detection of abiotic stimulus GO:0009582 24 0.485
positive regulation of cell cycle GO:0045787 3 0.457
sensory organ development GO:0007423 393 0.440
Mouse
response to abiotic stimulus GO:0009628 122 0.395
sensory organ morphogenesis GO:0090596 200 0.385
detection of external stimulus GO:0009581 24 0.381
small molecule metabolic process GO:0044281 77 0.367
establishment of endothelial barrier GO:0061028 3 0.340
generation of neurons GO:0048699 385 0.319
cell surface receptor signaling pathway GO:0007166 325 0.295
negative regulation of sequestering of calcium ion GO:0051283 4 0.258
Zebrafish
response to drug GO:0042493 3 0.255
eye development GO:0001654 277 0.250
Mouse
pigmentation GO:0043473 85 0.246
retina development in camera type eye GO:0060041 146 0.240
Mouse
camera type eye development GO:0043010 222 0.215
Mouse
photoreceptor cell development GO:0042461 40 0.206
digestive system development GO:0055123 289 0.198
sensory perception of chemical stimulus GO:0007606 3 0.194
regulation of primary metabolic process GO:0080090 311 0.192
vasculature development GO:0001944 278 0.184
homeostatic process GO:0042592 142 0.166
Zebrafish
regulation of nitrogen compound metabolic process GO:0051171 251 0.165
photoreceptor cell differentiation GO:0046530 55 0.163
cellular nitrogen compound metabolic process GO:0034641 290 0.157
chordate embryonic development GO:0043009 271 0.157
glial cell differentiation GO:0010001 42 0.151
transmembrane receptor protein tyrosine kinase signaling pathway GO:0007169 42 0.147
neurological system process GO:0050877 62 0.145
Mouse
tube morphogenesis GO:0035239 349 0.142
negative regulation of nucleobase containing compound metabolic process GO:0045934 59 0.141
regulation of circadian sleep wake cycle GO:0042749 1 0.136
neuron development GO:0048666 262 0.129
regulation of biological quality GO:0065008 263 0.125
Zebrafish
axon ensheathment in central nervous system GO:0032291 2 0.124
cellular macromolecule metabolic process GO:0044260 391 0.121
Mouse
stem cell proliferation GO:0072089 4 0.119
digestive tract morphogenesis GO:0048546 231 0.115
gliogenesis GO:0042063 45 0.113
maintenance of location GO:0051235 4 0.110
Zebrafish
biosynthetic process GO:0009058 294 0.106
negative regulation of cell cell adhesion mediated by cadherin GO:2000048 2 0.105
digestive tract development GO:0048565 265 0.102
circadian regulation of gene expression GO:0032922 8 0.098
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.097
nuclear transport GO:0051169 4 0.095
positive regulation of metabolic process GO:0009893 108 0.095
epiboly GO:0090504 41 0.095
stem cell division GO:0017145 1 0.092
cellular amino acid metabolic process GO:0006520 7 0.091
cellular biosynthetic process GO:0044249 286 0.090
positive regulation of biological process GO:0048518 253 0.090
angiogenesis GO:0001525 158 0.089
guanosine containing compound metabolic process GO:1901068 4 0.088
visual perception GO:0007601 17 0.087
Mouse
cytokinesis GO:0000910 3 0.085
single organism metabolic process GO:0044710 217 0.085
eye photoreceptor cell differentiation GO:0001754 45 0.084
establishment of mitotic spindle localization GO:0040001 12 0.084
eye photoreceptor cell development GO:0042462 30 0.083
organelle organization GO:0006996 227 0.083
sensory perception GO:0007600 39 0.083
Mouse
sequestering of calcium ion GO:0051208 3 0.082
Zebrafish
gene expression GO:0010467 252 0.082
response to external stimulus GO:0009605 264 0.079
heart development GO:0007507 313 0.078
nucleocytoplasmic transport GO:0006913 4 0.076
cell division GO:0051301 20 0.075
single organismal cell cell adhesion GO:0016337 29 0.075
ameboidal type cell migration GO:0001667 143 0.073
negative regulation of biological process GO:0048519 304 0.073
Zebrafish
neuron differentiation GO:0030182 353 0.072
regulation of nucleocytoplasmic transport GO:0046822 2 0.071
entrainment of circadian clock by photoperiod GO:0043153 1 0.071
nucleobase containing compound metabolic process GO:0006139 274 0.071
blood vessel development GO:0001568 246 0.071
neural precursor cell proliferation GO:0061351 20 0.068
establishment of organelle localization GO:0051656 45 0.068
inositol lipid mediated signaling GO:0048017 2 0.067
blood vessel morphogenesis GO:0048514 216 0.065
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.064
cellular amine metabolic process GO:0044106 2 0.059
positive regulation of cellular metabolic process GO:0031325 94 0.059
positive regulation of map kinase activity GO:0043406 3 0.059
nitrogen compound metabolic process GO:0006807 319 0.059
lipid metabolic process GO:0006629 52 0.058
sensory perception of light stimulus GO:0050953 19 0.058
Mouse
phosphorus metabolic process GO:0006793 109 0.057
Mouse
organelle localization GO:0051640 49 0.056
cellular protein modification process GO:0006464 100 0.056
Mouse
neural crest cell development GO:0014032 62 0.056
positive regulation of cellular process GO:0048522 201 0.055
morphogenesis of an epithelium GO:0002009 333 0.055
retina morphogenesis in camera type eye GO:0060042 79 0.054
neural retina development GO:0003407 49 0.054
embryonic organ morphogenesis GO:0048562 274 0.054
amine metabolic process GO:0009308 2 0.053
system process GO:0003008 185 0.053
Mouse
aging GO:0007568 2 0.053
enzyme linked receptor protein signaling pathway GO:0007167 106 0.052
regulation of cellular metabolic process GO:0031323 320 0.052
embryonic pattern specification GO:0009880 44 0.052
regulation of localization GO:0032879 104 0.051
Zebrafish
transmission of nerve impulse GO:0019226 19 0.051
cellular lipid metabolic process GO:0044255 36 0.051
regulation of protein binding GO:0043393 3 0.051
positive regulation of cell division GO:0051781 2 0.051
negative regulation of rna metabolic process GO:0051253 48 0.050
regulation of gene expression GO:0010468 265 0.049
single organism biosynthetic process GO:0044711 71 0.049
receptor recycling GO:0001881 4 0.048
embryo development ending in birth or egg hatching GO:0009792 271 0.048
developmental programmed cell death GO:0010623 4 0.046
response to light intensity GO:0009642 1 0.046
chemosensory behavior GO:0007635 1 0.046
regulation of homeostatic process GO:0032844 9 0.046
Zebrafish
regulation of macromolecule metabolic process GO:0060255 317 0.045
positive regulation of macromolecule metabolic process GO:0010604 93 0.045
regulation of peptidyl tyrosine phosphorylation GO:0050730 1 0.044
vascular endothelial growth factor receptor signaling pathway GO:0048010 13 0.044
multicellular organism growth GO:0035264 4 0.044
monoamine transport GO:0015844 1 0.043
regulation of establishment of protein localization GO:0070201 4 0.043
brain development GO:0007420 293 0.042
regulation of metabolic process GO:0019222 359 0.041
camera type eye morphogenesis GO:0048593 108 0.041
cortical actin cytoskeleton organization GO:0030866 1 0.040
amino acid transport GO:0006865 2 0.040
organic acid metabolic process GO:0006082 31 0.040
regulation of organ morphogenesis GO:2000027 35 0.039
organonitrogen compound biosynthetic process GO:1901566 47 0.039
hematopoietic or lymphoid organ development GO:0048534 191 0.038
cell cycle GO:0007049 93 0.038
neuroblast proliferation GO:0007405 2 0.038
cellular response to chemical stimulus GO:0070887 157 0.038
ribose phosphate biosynthetic process GO:0046390 20 0.038
establishment of mitotic spindle orientation GO:0000132 10 0.037
regulation of cyclic nucleotide biosynthetic process GO:0030802 15 0.037
embryonic heart tube development GO:0035050 133 0.037
retinal pigment epithelium development GO:0003406 8 0.037
cell cell adhesion mediated by cadherin GO:0044331 5 0.036
behavior GO:0007610 74 0.036
cellular ketone metabolic process GO:0042180 11 0.036
establishment of cell polarity GO:0030010 18 0.036
oxoacid metabolic process GO:0043436 31 0.036
calcium mediated signaling GO:0019722 2 0.035
regulation of cellular amine metabolic process GO:0033238 0 0.035
response to hydrogen peroxide GO:0042542 3 0.035
localization of cell GO:0051674 244 0.035
divalent inorganic cation homeostasis GO:0072507 22 0.034
Zebrafish
regulation of lipid catabolic process GO:0050994 2 0.034
regulation of hormone secretion GO:0046883 2 0.034
response to carbohydrate GO:0009743 3 0.034
serotonin metabolic process GO:0042428 1 0.033
cellular aromatic compound metabolic process GO:0006725 295 0.033
calcium ion homeostasis GO:0055074 19 0.033
Zebrafish
regulation of protein transport GO:0051223 3 0.033
establishment of blood brain barrier GO:0060856 2 0.032
cell morphogenesis GO:0000902 289 0.032
organonitrogen compound metabolic process GO:1901564 74 0.032
glucose transport GO:0015758 6 0.032
metal ion homeostasis GO:0055065 26 0.031
Zebrafish
immune system process GO:0002376 241 0.031
vitamin a metabolic process GO:0006776 1 0.031
central nervous system development GO:0007417 387 0.031
ear development GO:0043583 127 0.031
anion transmembrane transport GO:0098656 12 0.030
negative regulation of retinal cell programmed cell death GO:0046671 2 0.030
heterocycle metabolic process GO:0046483 290 0.030
retinal metabolic process GO:0042574 3 0.030
organic cyclic compound metabolic process GO:1901360 301 0.029
chemical homeostasis GO:0048878 49 0.029
Zebrafish
regulation of smoothened signaling pathway GO:0008589 18 0.029
immune system development GO:0002520 191 0.029
negative regulation of macromolecule metabolic process GO:0010605 76 0.029
smoothened signaling pathway GO:0007224 30 0.029
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.029
aromatic amino acid family metabolic process GO:0009072 1 0.029
carboxylic acid metabolic process GO:0019752 22 0.029
vitamin a biosynthetic process GO:0035238 1 0.029
heterocycle biosynthetic process GO:0018130 215 0.028
regulation of nucleic acid templated transcription GO:1903506 213 0.028
entrainment of circadian clock GO:0009649 2 0.028
nucleobase containing compound biosynthetic process GO:0034654 205 0.028
light adaption GO:0036367 1 0.028
gtp catabolic process GO:0006184 2 0.027
cellular component assembly involved in morphogenesis GO:0010927 107 0.027
retinal cell programmed cell death GO:0046666 2 0.027
cellular component movement GO:0006928 335 0.027
cation homeostasis GO:0055080 33 0.026
Zebrafish
transcription from rna polymerase ii promoter GO:0006366 80 0.026
cellular nitrogen compound biosynthetic process GO:0044271 218 0.026
protein desumoylation GO:0016926 1 0.026
carbohydrate derivative metabolic process GO:1901135 61 0.025
negative regulation of kinase activity GO:0033673 4 0.025
regulation of transferase activity GO:0051338 16 0.025
oxidation reduction process GO:0055114 41 0.025
negative regulation of protein phosphorylation GO:0001933 4 0.024
primary amino compound metabolic process GO:1901160 1 0.024
response to uv GO:0009411 3 0.024
response to oxygen containing compound GO:1901700 55 0.024
gastrulation GO:0007369 208 0.024
organic cyclic compound biosynthetic process GO:1901362 223 0.024
midbrain development GO:0030901 28 0.024
diterpenoid biosynthetic process GO:0016102 7 0.024
ribonucleotide metabolic process GO:0009259 27 0.024
negative regulation of transcription dna templated GO:0045892 45 0.024
wnt signaling pathway GO:0016055 80 0.024
regulation of cell migration GO:0030334 40 0.023
regulation of transcription dna templated GO:0006355 213 0.023
skeletal system development GO:0001501 181 0.023
cellular response to abiotic stimulus GO:0071214 4 0.023
Zebrafish Mouse Rat
regeneration GO:0031099 91 0.023
regulation of cellular amino acid metabolic process GO:0006521 0 0.023
cellular component morphogenesis GO:0032989 336 0.023
regulation of membrane potential GO:0042391 23 0.023
response to chemical GO:0042221 320 0.022
aromatic compound biosynthetic process GO:0019438 217 0.022
positive regulation of gene expression GO:0010628 71 0.021
guanosine containing compound catabolic process GO:1901069 2 0.021
response to stress GO:0006950 263 0.021
single organism organelle organization GO:1902589 199 0.021
mesenchyme development GO:0060485 127 0.021
regulation of inflammatory response GO:0050727 2 0.021
segmentation GO:0035282 97 0.020
determination of bilateral symmetry GO:0009855 204 0.020
regulation of wnt signaling pathway GO:0030111 53 0.020
nuclear import GO:0051170 3 0.020
multicellular organismal homeostasis GO:0048871 29 0.020
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.020
rna metabolic process GO:0016070 219 0.020
cell motility GO:0048870 244 0.020
cellular homeostasis GO:0019725 26 0.020
Zebrafish
regulation of cell cell adhesion GO:0022407 13 0.019
regulation of intracellular protein transport GO:0033157 3 0.019
multicellular organismal signaling GO:0035637 22 0.019
embryonic heart tube morphogenesis GO:0003143 108 0.019
endocardium morphogenesis GO:0003160 4 0.019
regulation of purine nucleotide catabolic process GO:0033121 2 0.019
head development GO:0060322 303 0.019
purine containing compound biosynthetic process GO:0072522 20 0.019
axon ensheathment GO:0008366 18 0.019
camera type eye photoreceptor cell differentiation GO:0060219 19 0.019
negative regulation of rna biosynthetic process GO:1902679 45 0.018
regulation of signal transduction GO:0009966 225 0.018
cardiogenic plate morphogenesis GO:0003142 1 0.018
regulation of cellular carbohydrate metabolic process GO:0010675 4 0.018
regulation of receptor recycling GO:0001919 3 0.018
positive regulation of transport GO:0051050 2 0.018
epiboly involved in gastrulation with mouth forming second GO:0055113 35 0.018
transcription dna templated GO:0006351 181 0.018
purine nucleotide biosynthetic process GO:0006164 20 0.018
lipid biosynthetic process GO:0008610 22 0.018
negative regulation of cell death GO:0060548 60 0.017
neuronal action potential GO:0019228 18 0.017
microtubule based process GO:0007017 60 0.017
purine ribonucleotide metabolic process GO:0009150 27 0.017
dopamine metabolic process GO:0042417 2 0.017
establishment of spindle localization GO:0051293 12 0.017
response to food GO:0032094 1 0.017
pancreas development GO:0031016 84 0.017
convergent extension GO:0060026 118 0.017
rna biosynthetic process GO:0032774 181 0.017
macromolecule modification GO:0043412 111 0.017
Mouse
regulation of cellular biosynthetic process GO:0031326 245 0.017
catecholamine metabolic process GO:0006584 2 0.017
catechol containing compound biosynthetic process GO:0009713 2 0.017
cortical cytoskeleton organization GO:0030865 1 0.016
sensory system development GO:0048880 76 0.016
regulation of biosynthetic process GO:0009889 250 0.016
protein phosphorylation GO:0006468 47 0.016
Mouse
lateral line development GO:0048882 66 0.016
negative regulation of macromolecule biosynthetic process GO:0010558 48 0.016
response to organic substance GO:0010033 153 0.016
purine containing compound metabolic process GO:0072521 29 0.016
cell fate commitment GO:0045165 99 0.016
regulation of circadian rhythm GO:0042752 4 0.016
circadian sleep wake cycle process GO:0022410 2 0.016
regulation of cellular ketone metabolic process GO:0010565 7 0.016
positive regulation of catabolic process GO:0009896 4 0.016
regulation of multicellular organismal process GO:0051239 277 0.016
regulation of nucleoside metabolic process GO:0009118 2 0.016
mitotic cell cycle GO:0000278 64 0.016
axis specification GO:0009798 43 0.016
developmental growth GO:0048589 166 0.015
cell death GO:0008219 121 0.015
cell projection assembly GO:0030031 64 0.015
purine ribonucleotide biosynthetic process GO:0009152 20 0.015
mitotic cell cycle process GO:1903047 48 0.015
regulation of glial cell differentiation GO:0045685 4 0.015
nucleic acid metabolic process GO:0090304 244 0.015
lateral line system development GO:0048925 76 0.015
pigment granule localization GO:0051875 25 0.015
regulation of cell communication GO:0010646 232 0.015
activation of mapk activity GO:0000187 3 0.015
negative regulation of cellular biosynthetic process GO:0031327 55 0.015
intracellular estrogen receptor signaling pathway GO:0030520 3 0.014
ion homeostasis GO:0050801 41 0.014
Zebrafish
regulation of circadian sleep wake cycle sleep GO:0045187 1 0.014
terpenoid metabolic process GO:0006721 15 0.014
negative regulation of cellular metabolic process GO:0031324 77 0.014
macromolecule biosynthetic process GO:0009059 227 0.014
regulation of organelle organization GO:0033043 29 0.014
response to vitamin GO:0033273 3 0.014
negative regulation of gene expression GO:0010629 65 0.014
cyclic purine nucleotide metabolic process GO:0052652 18 0.013
regulation of canonical wnt signaling pathway GO:0060828 34 0.013
negative regulation of developmental process GO:0051093 65 0.013
positive regulation of cellular biosynthetic process GO:0031328 68 0.013
heart morphogenesis GO:0003007 156 0.013
cellular divalent inorganic cation homeostasis GO:0072503 13 0.013
Zebrafish
regulation of cell death GO:0010941 103 0.013
cellular cation homeostasis GO:0030003 17 0.013
Zebrafish
rho protein signal transduction GO:0007266 5 0.013
regulation of multicellular organism growth GO:0040014 4 0.013
regulation of growth rate GO:0040009 1 0.013
cellular ion homeostasis GO:0006873 17 0.013
Zebrafish
hemopoiesis GO:0030097 183 0.013
regulation of rna metabolic process GO:0051252 224 0.013
regulation of multicellular organismal development GO:2000026 223 0.013
regulation of stem cell differentiation GO:2000736 4 0.013
negative regulation of protein kinase activity GO:0006469 4 0.013
embryonic axis specification GO:0000578 12 0.013
death GO:0016265 121 0.013
glial cell development GO:0021782 20 0.013
regulation of gtp catabolic process GO:0033124 2 0.012
protein modification by small protein removal GO:0070646 1 0.012
regulation of cytoplasmic transport GO:1903649 4 0.012
regulation of rna biosynthetic process GO:2001141 213 0.012
actomyosin structure organization GO:0031032 53 0.012
isoprenoid metabolic process GO:0006720 15 0.012
lipid catabolic process GO:0016042 4 0.012
single organism nuclear import GO:1902593 3 0.012
synaptic transmission glycinergic GO:0060012 1 0.012
response to monosaccharide GO:0034284 3 0.012
cell projection morphogenesis GO:0048858 244 0.012
negative regulation of metabolic process GO:0009892 86 0.012
cell migration involved in gastrulation GO:0042074 79 0.012
positive regulation of nucleobase containing compound metabolic process GO:0045935 69 0.012
organelle assembly GO:0070925 110 0.012
organophosphate metabolic process GO:0019637 37 0.012
phosphate containing compound metabolic process GO:0006796 108 0.012
Mouse
circulatory system process GO:0003013 87 0.012
mesenchymal cell differentiation GO:0048762 87 0.012
thermosensory behavior GO:0040040 1 0.012
carbohydrate homeostasis GO:0033500 1 0.012
cell cell junction organization GO:0045216 10 0.012
blood circulation GO:0008015 87 0.012
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.011
atp catabolic process GO:0006200 4 0.011
somite development GO:0061053 96 0.011
regulation of gtpase activity GO:0043087 2 0.011
response to hormone GO:0009725 48 0.011
regulation of nucleotide catabolic process GO:0030811 2 0.011
cell projection organization GO:0030030 284 0.011
negative regulation of defense response GO:0031348 2 0.011
ribonucleotide biosynthetic process GO:0009260 20 0.011
cell migration involved in heart development GO:0060973 22 0.011
regulation of cell cell adhesion mediated by cadherin GO:2000047 5 0.011
establishment of protein localization to organelle GO:0072594 4 0.011
intracellular signal transduction GO:0035556 85 0.011
retinoid metabolic process GO:0001523 15 0.011
positive regulation of cell adhesion GO:0045785 1 0.011
protein import GO:0017038 3 0.011
cellular chemical homeostasis GO:0055082 17 0.011
Zebrafish
inorganic anion transport GO:0015698 25 0.011
regulation of ph GO:0006885 3 0.011
skeletal system morphogenesis GO:0048705 102 0.010
neural crest cell differentiation GO:0014033 72 0.010
taxis GO:0042330 109 0.010
gtp metabolic process GO:0046039 4 0.010
protein targeting to nucleus GO:0044744 3 0.010
sensory perception of smell GO:0007608 2 0.010
proteasomal protein catabolic process GO:0010498 2 0.010

rho disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
retinal disease DOID:5679 0 0.914
Human
sensory system disease DOID:0050155 0 0.914
Human
disease of anatomical entity DOID:7 0 0.914
Human
eye and adnexa disease DOID:1492 0 0.914
Human
nervous system disease DOID:863 0 0.914
Human
eye disease DOID:5614 0 0.914
Human
retinal degeneration DOID:8466 0 0.117
Human