Danio rerio

0 known processes

lmx1a

LIM homeobox transcription factor 1, alpha

(Aliases: si:ch211-260g14.3)

lmx1a biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
response to external stimulus GO:0009605 264 0.307
embryo development ending in birth or egg hatching GO:0009792 271 0.190
larval development GO:0002164 2 0.188
single organism reproductive process GO:0044702 40 0.185
head development GO:0060322 303 0.185
cellular component movement GO:0006928 335 0.168
cellular nitrogen compound biosynthetic process GO:0044271 218 0.129
response to chemical GO:0042221 320 0.124
regulation of multicellular organismal process GO:0051239 277 0.124
embryonic organ development GO:0048568 381 0.119
regulation of cellular metabolic process GO:0031323 320 0.112
sensory organ development GO:0007423 393 0.105
regionalization GO:0003002 274 0.101
cellular macromolecule metabolic process GO:0044260 391 0.098
axon guidance GO:0007411 86 0.095
positive regulation of cellular process GO:0048522 201 0.087
multi organism process GO:0051704 134 0.085
establishment of localization GO:0051234 244 0.085
Fly
cell motility GO:0048870 244 0.084
tube morphogenesis GO:0035239 349 0.083
response to abiotic stimulus GO:0009628 122 0.082
embryonic organ morphogenesis GO:0048562 274 0.081
single organism localization GO:1902578 225 0.080
Fly
positive regulation of biological process GO:0048518 253 0.079
cell morphogenesis involved in neuron differentiation GO:0048667 163 0.077
Fly
anterior posterior pattern specification GO:0009952 152 0.075
cell morphogenesis GO:0000902 289 0.075
Fly
cellular aromatic compound metabolic process GO:0006725 295 0.073
response to stress GO:0006950 263 0.071
oocyte maturation GO:0001556 4 0.068
neuron differentiation GO:0030182 353 0.067
Fly
digestive system development GO:0055123 289 0.066
blood vessel morphogenesis GO:0048514 216 0.064
cell projection organization GO:0030030 284 0.063
Fly
brain development GO:0007420 293 0.062
regulation of protein complex assembly GO:0043254 3 0.060
eye development GO:0001654 277 0.059
biosynthetic process GO:0009058 294 0.059
heterocycle metabolic process GO:0046483 290 0.058
regulation of response to stimulus GO:0048583 269 0.057
nucleobase containing compound metabolic process GO:0006139 274 0.057
chordate embryonic development GO:0043009 271 0.056
regulation of reproductive process GO:2000241 4 0.055
regulation of biosynthetic process GO:0009889 250 0.054
heart development GO:0007507 313 0.052
regulation of cellular biosynthetic process GO:0031326 245 0.052
female sex differentiation GO:0046660 4 0.052
cellular component morphogenesis GO:0032989 336 0.051
Fly
rna metabolic process GO:0016070 219 0.051
cellular nitrogen compound metabolic process GO:0034641 290 0.050
regulation of anatomical structure morphogenesis GO:0022603 130 0.050
gene expression GO:0010467 252 0.049
reproduction GO:0000003 40 0.049
retinal ganglion cell axon guidance GO:0031290 35 0.049
organic cyclic compound biosynthetic process GO:1901362 223 0.049
neuron development GO:0048666 262 0.049
Fly
signal transduction GO:0007165 455 0.048
regulation of primary metabolic process GO:0080090 311 0.048
lipid storage GO:0019915 1 0.047
eye morphogenesis GO:0048592 144 0.046
generation of neurons GO:0048699 385 0.045
Fly
regulation of transcription dna templated GO:0006355 213 0.044
regulation of nitrogen compound metabolic process GO:0051171 251 0.044
multicellular organism growth GO:0035264 4 0.044
regulation of metabolic process GO:0019222 359 0.043
chemotaxis GO:0006935 104 0.042
locomotion GO:0040011 313 0.042
single organism transport GO:0044765 206 0.042
Fly
digestive tract development GO:0048565 265 0.042
regulation of signal transduction GO:0009966 225 0.041
response to amphetamine GO:0001975 1 0.041
hepaticobiliary system development GO:0061008 98 0.041
cell migration GO:0016477 237 0.040
transcription dna templated GO:0006351 181 0.040
retina development in camera type eye GO:0060041 146 0.040
multi organism reproductive process GO:0044703 36 0.039
morphogenesis of an epithelium GO:0002009 333 0.039
nucleic acid metabolic process GO:0090304 244 0.039
striated muscle cell differentiation GO:0051146 129 0.038
digestive tract morphogenesis GO:0048546 231 0.038
negative regulation of transcription dna templated GO:0045892 45 0.037
regulation of cell differentiation GO:0045595 142 0.037
stem cell development GO:0048864 82 0.037
regulation of developmental process GO:0050793 247 0.037
heterocycle biosynthetic process GO:0018130 215 0.037
negative regulation of biological process GO:0048519 304 0.036
cellular response to chemical stimulus GO:0070887 157 0.036
regulation of multicellular organismal development GO:2000026 223 0.036
rna biosynthetic process GO:0032774 181 0.036
cellular response to external stimulus GO:0071496 2 0.035
negative regulation of cellular process GO:0048523 283 0.035
cellular localization GO:0051641 97 0.035
compound eye development GO:0048749 2 0.035
cellular biosynthetic process GO:0044249 286 0.035
positive regulation of cellular component biogenesis GO:0044089 3 0.034
multicellular organismal reproductive process GO:0048609 35 0.034
regulation of multicellular organism growth GO:0040014 4 0.033
cellular response to starvation GO:0009267 1 0.033
aging GO:0007568 2 0.032
regulation of synapse organization GO:0050807 3 0.031
single organism organelle organization GO:1902589 199 0.031
mesenchyme development GO:0060485 127 0.031
neuron projection morphogenesis GO:0048812 161 0.030
Fly
translational initiation GO:0006413 3 0.030
cell projection morphogenesis GO:0048858 244 0.030
Fly
regulation of tube size GO:0035150 2 0.030
cell part morphogenesis GO:0032990 246 0.030
Fly
growth GO:0040007 174 0.028
liver development GO:0001889 96 0.028
positive regulation of transport GO:0051050 2 0.028
organic substance biosynthetic process GO:1901576 289 0.028
dorsal ventral pattern formation GO:0009953 125 0.028
inorganic cation transmembrane transport GO:0098662 50 0.028
negative regulation of metabolic process GO:0009892 86 0.026
cation transmembrane transport GO:0098655 65 0.026
development of primary female sexual characteristics GO:0046545 4 0.026
cellular process involved in reproduction in multicellular organism GO:0022412 28 0.026
regulation of cell activation GO:0050865 1 0.026
adult behavior GO:0030534 2 0.026
developmental process involved in reproduction GO:0003006 27 0.026
multicellular organism reproduction GO:0032504 35 0.026
cell maturation GO:0048469 23 0.026
single organism metabolic process GO:0044710 217 0.025
sensory perception of chemical stimulus GO:0007606 3 0.025
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.025
regulation of programmed cell death GO:0043067 101 0.025
nitrogen compound metabolic process GO:0006807 319 0.025
death GO:0016265 121 0.025
reproductive process GO:0022414 40 0.025
central nervous system development GO:0007417 387 0.024
response to amine GO:0014075 1 0.024
determination of heart left right asymmetry GO:0061371 117 0.024
stem cell maintenance GO:0019827 4 0.024
cilium assembly GO:0042384 58 0.024
regulation of dna replication GO:0006275 3 0.024
regulation of blood vessel size GO:0050880 2 0.023
response to carbohydrate GO:0009743 3 0.023
taxis GO:0042330 109 0.023
muscle structure development GO:0061061 196 0.023
response to radiation GO:0009314 51 0.023
regulation of autophagy GO:0010506 3 0.023
regulation of nucleic acid templated transcription GO:1903506 213 0.023
somitogenesis GO:0001756 87 0.023
sensory organ morphogenesis GO:0090596 200 0.022
negative regulation of reproductive process GO:2000242 3 0.022
stem cell division GO:0017145 1 0.022
vasculature development GO:0001944 278 0.022
somite development GO:0061053 96 0.022
programmed cell death GO:0012501 119 0.022
apoptotic process GO:0006915 116 0.022
aromatic compound biosynthetic process GO:0019438 217 0.022
transcription from rna polymerase ii promoter GO:0006366 80 0.022
camera type eye development GO:0043010 222 0.022
retina morphogenesis in camera type eye GO:0060042 79 0.021
metal ion transport GO:0030001 58 0.021
regulation of rna metabolic process GO:0051252 224 0.021
positive regulation of nucleobase containing compound metabolic process GO:0045935 69 0.021
photoreceptor cell differentiation GO:0046530 55 0.021
response to endogenous stimulus GO:0009719 83 0.021
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.021
sexual reproduction GO:0019953 36 0.021
positive regulation of transcription dna templated GO:0045893 57 0.021
autophagy GO:0006914 4 0.020
gabaergic neuron differentiation GO:0097154 2 0.020
system process GO:0003008 185 0.020
cellular response to extracellular stimulus GO:0031668 2 0.020
response to organic substance GO:0010033 153 0.020
organic cyclic compound metabolic process GO:1901360 301 0.020
positive regulation of catabolic process GO:0009896 4 0.020
regulation of rna biosynthetic process GO:2001141 213 0.020
transmembrane transport GO:0055085 120 0.020
neuron projection guidance GO:0097485 86 0.020
germ cell development GO:0007281 22 0.019
regulation of response to extracellular stimulus GO:0032104 1 0.019
catechol containing compound metabolic process GO:0009712 2 0.019
optomotor response GO:0071632 1 0.019
defense response GO:0006952 47 0.019
organelle assembly GO:0070925 110 0.019
protein stabilization GO:0050821 2 0.019
gamete generation GO:0007276 33 0.019
regulation of molecular function GO:0065009 70 0.018
protein localization to nucleus GO:0034504 3 0.018
regulation of macromolecule metabolic process GO:0060255 317 0.018
organonitrogen compound biosynthetic process GO:1901566 47 0.018
ventral spinal cord development GO:0021517 35 0.018
circulatory system process GO:0003013 87 0.018
trabecula morphogenesis GO:0061383 2 0.017
determination of left right symmetry GO:0007368 179 0.017
specification of symmetry GO:0009799 204 0.017
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.017
regulation of gene expression GO:0010468 265 0.017
cell morphogenesis involved in differentiation GO:0000904 195 0.017
Fly
localization of cell GO:0051674 244 0.017
regulation of localization GO:0032879 104 0.017
cartilage development GO:0051216 96 0.017
cardiac conduction system development GO:0003161 1 0.017
embryonic heart tube morphogenesis GO:0003143 108 0.016
endodermal cell fate specification GO:0001714 17 0.016
regulation of signaling GO:0023051 235 0.016
heart looping GO:0001947 94 0.016
multicellular organismal response to stress GO:0033555 2 0.016
specification of organ identity GO:0010092 2 0.016
cell death GO:0008219 121 0.016
negative regulation of protein complex assembly GO:0031333 1 0.016
macroautophagy GO:0016236 1 0.016
cell surface receptor signaling pathway GO:0007166 325 0.015
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.015
regulation of mrna processing GO:0050684 3 0.015
response to other organism GO:0051707 97 0.015
skeletal system development GO:0001501 181 0.015
oxoacid metabolic process GO:0043436 31 0.015
homeostatic process GO:0042592 142 0.015
tissue remodeling GO:0048771 4 0.015
ion transmembrane transport GO:0034220 91 0.015
cardiac chamber formation GO:0003207 4 0.015
organonitrogen compound metabolic process GO:1901564 74 0.015
smooth muscle contraction GO:0006939 2 0.015
dna templated transcription initiation GO:0006352 1 0.015
spemann organizer formation at the embryonic shield GO:0060063 2 0.015
regulation of locomotion GO:0040012 55 0.015
regulation of transcription from rna polymerase ii promoter GO:0006357 114 0.015
organelle organization GO:0006996 227 0.014
determination of bilateral symmetry GO:0009855 204 0.014
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.014
internal peptidyl lysine acetylation GO:0018393 2 0.014
photoreceptor cell development GO:0042461 40 0.014
cellular response to oxygen levels GO:0071453 1 0.014
nucleobase containing compound biosynthetic process GO:0034654 205 0.014
blood circulation GO:0008015 87 0.014
response to monosaccharide GO:0034284 3 0.014
heart morphogenesis GO:0003007 156 0.014
regulation of developmental growth GO:0048638 38 0.014
regulation of macromolecule biosynthetic process GO:0010556 225 0.014
transport GO:0006810 220 0.014
Fly
regulation of bmp signaling pathway GO:0030510 39 0.014
meiotic cell cycle process GO:1903046 3 0.014
regulation of embryonic development GO:0045995 47 0.014
immune system process GO:0002376 241 0.014
positive regulation of secretion GO:0051047 1 0.014
germ line stem cell division GO:0042078 1 0.014
gastrulation GO:0007369 208 0.014
negative regulation of cellular metabolic process GO:0031324 77 0.014
response to lipid GO:0033993 60 0.014
developmental maturation GO:0021700 34 0.013
protein phosphorylation GO:0006468 47 0.013
cellular macromolecule biosynthetic process GO:0034645 224 0.013
developmental growth involved in morphogenesis GO:0060560 86 0.013
bmp signaling pathway GO:0030509 52 0.013
positive regulation of peptidase activity GO:0010952 10 0.013
positive regulation of lipid metabolic process GO:0045834 1 0.013
regulation of cell communication GO:0010646 232 0.013
cell cell recognition GO:0009988 1 0.013
maintenance of location GO:0051235 4 0.013
ear morphogenesis GO:0042471 64 0.013
developmental growth GO:0048589 166 0.013
axonogenesis GO:0007409 152 0.013
regulation of metal ion transport GO:0010959 4 0.013
immunoglobulin mediated immune response GO:0016064 3 0.013
response to amino acid GO:0043200 2 0.013
cation transport GO:0006812 81 0.012
developmental programmed cell death GO:0010623 4 0.012
organic substance transport GO:0071702 58 0.012
monovalent inorganic cation transport GO:0015672 42 0.012
negative regulation of gene expression GO:0010629 65 0.012
positive regulation of cellular catabolic process GO:0031331 3 0.012
protein complex subunit organization GO:0071822 46 0.012
organic acid metabolic process GO:0006082 31 0.012
adrenal gland development GO:0030325 10 0.012
positive regulation of blood circulation GO:1903524 2 0.012
epithelial cell differentiation GO:0030855 116 0.012
camera type eye morphogenesis GO:0048593 108 0.012
apoptotic process involved in morphogenesis GO:0060561 2 0.012
positive regulation of cellular metabolic process GO:0031325 94 0.012
regulation of alternative mrna splicing via spliceosome GO:0000381 1 0.012
macromolecule biosynthetic process GO:0009059 227 0.012
response to hypoxia GO:0001666 25 0.012
response to decreased oxygen levels GO:0036293 25 0.012
meiotic nuclear division GO:0007126 4 0.012
regulation of circadian rhythm GO:0042752 4 0.012
regulation of stem cell differentiation GO:2000736 4 0.012
regulation of biological quality GO:0065008 263 0.011
cognition GO:0050890 1 0.011
double strand break repair GO:0006302 3 0.011
female gonad development GO:0008585 4 0.011
cellular response to nutrient levels GO:0031669 2 0.011
carboxylic acid metabolic process GO:0019752 22 0.011
exocytosis GO:0006887 1 0.011
positive regulation of rna biosynthetic process GO:1902680 57 0.011
canonical wnt signaling pathway GO:0060070 48 0.011
muscle organ development GO:0007517 101 0.011
negative regulation of developmental process GO:0051093 65 0.011
circadian sleep wake cycle sleep GO:0050802 1 0.011
single organism biosynthetic process GO:0044711 71 0.011
protein metabolic process GO:0019538 183 0.011
axon development GO:0061564 166 0.011
cellular response to hypoxia GO:0071456 1 0.011
cellular response to organic substance GO:0071310 105 0.011
response to nutrient GO:0007584 3 0.011
muscle cell differentiation GO:0042692 139 0.011
pancreas development GO:0031016 84 0.011
centrosome organization GO:0051297 1 0.011
positive regulation of biosynthetic process GO:0009891 68 0.011
kidney development GO:0001822 92 0.010
response to xenobiotic stimulus GO:0009410 45 0.010
positive regulation of protein metabolic process GO:0051247 23 0.010
response to biotic stimulus GO:0009607 97 0.010
gland development GO:0048732 143 0.010
protein modification process GO:0036211 100 0.010
regulation of protein targeting GO:1903533 2 0.010
positive regulation of rna metabolic process GO:0051254 59 0.010
female gamete generation GO:0007292 14 0.010
pancreatic a cell development GO:0003322 2 0.010
connective tissue development GO:0061448 99 0.010
synaptic growth at neuromuscular junction GO:0051124 2 0.010
regulation of transporter activity GO:0032409 2 0.010
response to hormone GO:0009725 48 0.010
skeletal muscle organ development GO:0060538 78 0.010

lmx1a disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.086
nervous system disease DOID:863 0 0.014
musculoskeletal system disease DOID:17 0 0.012
disease of metabolism DOID:0014667 0 0.011
cardiovascular system disease DOID:1287 0 0.011
disease of cellular proliferation DOID:14566 0 0.010