Danio rerio

14 known processes

rpl3

ribosomal protein L3

(Aliases: MGC110350,wu:fb65e09,wu:fa99g02,zgc:110350)

rpl3 biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
cellular biosynthetic process GO:0044249 286 0.677
larval development GO:0002164 2 0.675
Worm
single fertilization GO:0007338 3 0.642
nucleobase containing compound metabolic process GO:0006139 274 0.581
centrosome duplication GO:0051298 1 0.417
Fly
biosynthetic process GO:0009058 294 0.417
gene expression GO:0010467 252 0.397
organelle assembly GO:0070925 110 0.381
Yeast
cellular macromolecule metabolic process GO:0044260 391 0.376
nucleic acid metabolic process GO:0090304 244 0.368
nitrogen compound metabolic process GO:0006807 319 0.336
microtubule organizing center organization GO:0031023 1 0.301
Fly
nuclear migration GO:0007097 3 0.294
nuclear transport GO:0051169 4 0.287
fertilization GO:0009566 3 0.280
regulation of primary metabolic process GO:0080090 311 0.253
mitotic cell cycle process GO:1903047 48 0.252
Fly
organic substance biosynthetic process GO:1901576 289 0.247
organic cyclic compound metabolic process GO:1901360 301 0.243
oocyte anterior posterior axis specification GO:0007314 4 0.240
aging GO:0007568 2 0.238
embryo development ending in birth or egg hatching GO:0009792 271 0.232
Worm
regulation of gene expression GO:0010468 265 0.228
pole plasm assembly GO:0007315 4 0.226
heterocycle metabolic process GO:0046483 290 0.225
single organism transport GO:0044765 206 0.186
rna metabolic process GO:0016070 219 0.173
cellular component biogenesis GO:0044085 178 0.168
Yeast
negative regulation of biological process GO:0048519 304 0.163
regulation of metabolic process GO:0019222 359 0.162
maintenance of location GO:0051235 4 0.159
positive regulation of translation GO:0045727 1 0.158
ribosome biogenesis GO:0042254 9 0.158
Yeast
centrosome organization GO:0051297 1 0.149
Fly
nucleocytoplasmic transport GO:0006913 4 0.146
nucleoside monophosphate catabolic process GO:0009125 4 0.136
lipid storage GO:0019915 1 0.135
negative regulation of cellular process GO:0048523 283 0.127
immune system process GO:0002376 241 0.125
regulation of transcription dna templated GO:0006355 213 0.123
rna localization GO:0006403 4 0.118
ribonucleoprotein complex biogenesis GO:0022613 13 0.117
Yeast
cellular macromolecule biosynthetic process GO:0034645 224 0.116
cellular component assembly GO:0022607 170 0.113
Yeast
cellular nitrogen compound metabolic process GO:0034641 290 0.107
nuclear export GO:0051168 1 0.107
organelle organization GO:0006996 227 0.106
Yeast Fly
macromolecule biosynthetic process GO:0009059 227 0.101
single organism organelle organization GO:1902589 199 0.101
Fly
transport GO:0006810 220 0.100
regulation of macromolecule biosynthetic process GO:0010556 225 0.098
guanosine containing compound metabolic process GO:1901068 4 0.095
regulation of biosynthetic process GO:0009889 250 0.095
intracellular mrna localization GO:0008298 1 0.094
centrosome cycle GO:0007098 1 0.094
Fly
cellular aromatic compound metabolic process GO:0006725 295 0.093
cell migration GO:0016477 237 0.092
translational initiation GO:0006413 3 0.088
gtp metabolic process GO:0046039 4 0.087
microtubule based process GO:0007017 60 0.082
Fly
aromatic compound catabolic process GO:0019439 15 0.078
protein metabolic process GO:0019538 183 0.078
regulation of cellular metabolic process GO:0031323 320 0.078
ion transport GO:0006811 114 0.073
regulation of cellular biosynthetic process GO:0031326 245 0.073
regulation of macromolecule metabolic process GO:0060255 317 0.072
establishment of protein localization to organelle GO:0072594 4 0.071
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.070
regulation of multicellular organism growth GO:0040014 4 0.069
sexual reproduction GO:0019953 36 0.069
ribosomal small subunit biogenesis GO:0042274 2 0.069
regulation of developmental process GO:0050793 247 0.068
cell motility GO:0048870 244 0.068
single organism localization GO:1902578 225 0.066
cellular nitrogen compound biosynthetic process GO:0044271 218 0.064
guanosine containing compound catabolic process GO:1901069 2 0.063
purine nucleoside monophosphate catabolic process GO:0009128 4 0.063
multicellular organism growth GO:0035264 4 0.063
cellular protein metabolic process GO:0044267 129 0.063
regulation of rna metabolic process GO:0051252 224 0.060
cellular nitrogen compound catabolic process GO:0044270 15 0.060
toxin transport GO:1901998 2 0.060
germ cell development GO:0007281 22 0.060
heterocycle biosynthetic process GO:0018130 215 0.058
regulation of protein transport GO:0051223 3 0.058
death GO:0016265 121 0.057
Worm
cellular component assembly involved in morphogenesis GO:0010927 107 0.054
cell death GO:0008219 121 0.054
Worm
reproduction GO:0000003 40 0.053
Worm
purine ribonucleoside monophosphate catabolic process GO:0009169 4 0.053
spindle assembly involved in mitosis GO:0090307 1 0.053
transmembrane transport GO:0055085 120 0.053
hematopoietic or lymphoid organ development GO:0048534 191 0.053
regulation of translational initiation GO:0006446 1 0.052
maturation of ssu rrna GO:0030490 1 0.052
rna export from nucleus GO:0006405 1 0.051
multicellular organismal reproductive process GO:0048609 35 0.051
positive regulation of cellular process GO:0048522 201 0.050
response to abiotic stimulus GO:0009628 122 0.050
negative regulation of cellular metabolic process GO:0031324 77 0.050
developmental growth GO:0048589 166 0.050
spindle organization GO:0007051 5 0.047
Fly
negative regulation of nucleobase containing compound metabolic process GO:0045934 59 0.047
maturation of ssu rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna GO:0000462 1 0.046
establishment of localization in cell GO:0051649 77 0.046
cellular process involved in reproduction in multicellular organism GO:0022412 28 0.045
regulation of rna biosynthetic process GO:2001141 213 0.045
gtp catabolic process GO:0006184 2 0.043
cell cycle GO:0007049 93 0.043
Fly
regulation of apoptotic process GO:0042981 98 0.043
cytokinesis GO:0000910 3 0.042
regulation of cell communication GO:0010646 232 0.041
nuclear import GO:0051170 3 0.041
regulation of nitrogen compound metabolic process GO:0051171 251 0.040
regulation of response to stimulus GO:0048583 269 0.039
regulation of cellular response to oxidative stress GO:1900407 2 0.039
negative regulation of apoptotic process GO:0043066 55 0.039
establishment of rna localization GO:0051236 3 0.039
gamete generation GO:0007276 33 0.039
nucleobase containing compound biosynthetic process GO:0034654 205 0.038
cell cell recognition GO:0009988 1 0.038
myofibril assembly GO:0030239 48 0.037
ribonucleoside monophosphate catabolic process GO:0009158 4 0.037
purine nucleotide metabolic process GO:0006163 27 0.037
atp catabolic process GO:0006200 4 0.036
macromolecular complex subunit organization GO:0043933 74 0.036
Yeast Fly
rrna processing GO:0006364 7 0.036
signal transduction GO:0007165 455 0.036
negative regulation of dna metabolic process GO:0051053 4 0.035
regulation of response to cytokine stimulus GO:0060759 3 0.035
spermatid differentiation GO:0048515 2 0.035
protein import GO:0017038 3 0.035
mitotic nuclear division GO:0007067 18 0.035
growth GO:0040007 174 0.035
single organism metabolic process GO:0044710 217 0.035
positive regulation of apoptotic signaling pathway GO:2001235 1 0.034
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.034
reproductive process GO:0022414 40 0.034
positive regulation of biological process GO:0048518 253 0.034
rrna metabolic process GO:0016072 8 0.033
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.033
programmed cell death GO:0012501 119 0.032
Worm
striated muscle cell development GO:0055002 108 0.032
cell surface receptor signaling pathway GO:0007166 325 0.032
nucleic acid transport GO:0050657 2 0.032
embryonic viscerocranium morphogenesis GO:0048703 52 0.032
response to chemical GO:0042221 320 0.032
microtubule cytoskeleton organization involved in mitosis GO:1902850 1 0.031
rna processing GO:0006396 25 0.030
negative regulation of gene expression GO:0010629 65 0.030
establishment of localization GO:0051234 244 0.030
catabolic process GO:0009056 32 0.030
positive regulation of metabolic process GO:0009893 108 0.029
regulation of multicellular organismal process GO:0051239 277 0.029
negative regulation of kinase activity GO:0033673 4 0.029
regulation of mrna processing GO:0050684 3 0.029
adherens junction organization GO:0034332 4 0.029
regulation of cellular amino acid metabolic process GO:0006521 0 0.029
organonitrogen compound metabolic process GO:1901564 74 0.028
cation transport GO:0006812 81 0.028
hydrogen peroxide metabolic process GO:0042743 2 0.027
intracellular transport GO:0046907 32 0.027
rna transport GO:0050658 2 0.027
organic cyclic compound biosynthetic process GO:1901362 223 0.027
dna catabolic process GO:0006308 1 0.027
small molecule metabolic process GO:0044281 77 0.027
regulation of establishment of protein localization GO:0070201 4 0.027
protein localization to nucleus GO:0034504 3 0.027
negative regulation of metabolic process GO:0009892 86 0.026
carbohydrate derivative metabolic process GO:1901135 61 0.026
regulation of mrna catabolic process GO:0061013 3 0.026
vasculature development GO:0001944 278 0.026
regulation of cytoplasmic transport GO:1903649 4 0.026
cellular amine metabolic process GO:0044106 2 0.025
adult behavior GO:0030534 2 0.025
spermatid development GO:0007286 2 0.025
macromolecule localization GO:0033036 54 0.025
regulation of purine nucleotide catabolic process GO:0033121 2 0.025
negative regulation of macromolecule metabolic process GO:0010605 76 0.025
pancreas development GO:0031016 84 0.025
pronuclear migration GO:0035046 1 0.024
regulation of gtp catabolic process GO:0033124 2 0.024
cytoplasm organization GO:0007028 4 0.024
positive regulation of cellular catabolic process GO:0031331 3 0.024
mitotic cell cycle GO:0000278 64 0.024
Fly
cellular response to organic substance GO:0071310 105 0.024
aromatic compound biosynthetic process GO:0019438 217 0.024
regulation of cellular amine metabolic process GO:0033238 0 0.024
regulation of multicellular organismal development GO:2000026 223 0.024
positive regulation of macromolecule metabolic process GO:0010604 93 0.024
heart development GO:0007507 313 0.024
mrna processing GO:0006397 14 0.023
ncrna processing GO:0034470 8 0.023
inorganic ion transmembrane transport GO:0098660 57 0.023
negative regulation of catabolic process GO:0009895 3 0.023
establishment of organelle localization GO:0051656 45 0.022
neurotransmitter transport GO:0006836 2 0.022
lymphocyte proliferation GO:0046651 1 0.022
glucose homeostasis GO:0042593 1 0.022
mononuclear cell proliferation GO:0032943 1 0.022
cellular response to chemical stimulus GO:0070887 157 0.022
brain development GO:0007420 293 0.022
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.022
cellular ketone metabolic process GO:0042180 11 0.022
protein secretion GO:0009306 1 0.022
single organism biosynthetic process GO:0044711 71 0.021
regulation of signal transduction GO:0009966 225 0.021
cytoskeleton organization GO:0007010 96 0.021
Fly
regulation of response to oxidative stress GO:1902882 2 0.021
muscle cell development GO:0055001 115 0.021
proteasomal protein catabolic process GO:0010498 2 0.020
regulation of proteolysis involved in cellular protein catabolic process GO:1903050 1 0.020
negative regulation of nucleic acid templated transcription GO:1903507 45 0.020
response to temperature stimulus GO:0009266 15 0.020
localization of cell GO:0051674 244 0.020
regulation of nucleoside metabolic process GO:0009118 2 0.020
response to hydrogen peroxide GO:0042542 3 0.020
i kappab kinase nf kappab signaling GO:0007249 4 0.020
organelle localization GO:0051640 49 0.020
cellular protein catabolic process GO:0044257 4 0.020
cation transmembrane transport GO:0098655 65 0.020
homeostatic process GO:0042592 142 0.020
response to wounding GO:0009611 116 0.019
positive regulation of biosynthetic process GO:0009891 68 0.019
immune response GO:0006955 28 0.019
cell death in response to oxidative stress GO:0036473 2 0.019
angiogenesis GO:0001525 158 0.019
regulation of reproductive process GO:2000241 4 0.019
organic substance transport GO:0071702 58 0.019
amine metabolic process GO:0009308 2 0.018
nuclear division GO:0000280 23 0.018
positive regulation of gtpase activity GO:0043547 1 0.018
negative regulation of response to stimulus GO:0048585 104 0.018
regulation of nucleotide catabolic process GO:0030811 2 0.018
regulation of programmed cell death GO:0043067 101 0.018
negative regulation of mrna metabolic process GO:1903312 3 0.018
nucleobase containing compound transport GO:0015931 2 0.018
carbohydrate homeostasis GO:0033500 1 0.018
positive regulation of gene expression GO:0010628 71 0.018
modification dependent protein catabolic process GO:0019941 3 0.018
gastrulation GO:0007369 208 0.018
cellular component movement GO:0006928 335 0.018
head development GO:0060322 303 0.017
maternal determination of anterior posterior axis embryo GO:0008358 4 0.017
negative regulation of protein kinase activity GO:0006469 4 0.017
heterocycle catabolic process GO:0046700 15 0.017
organic cyclic compound catabolic process GO:1901361 15 0.017
striated muscle cell differentiation GO:0051146 129 0.017
cell cycle g1 s phase transition GO:0044843 1 0.017
camera type eye development GO:0043010 222 0.017
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.017
positive regulation of nucleotide catabolic process GO:0030813 1 0.017
mitotic spindle organization GO:0007052 5 0.017
Fly
negative regulation of cellular catabolic process GO:0031330 3 0.017
mechanosensory behavior GO:0007638 2 0.017
embryonic skeletal system development GO:0048706 97 0.017
multi organism process GO:0051704 134 0.017
regulation of gtpase activity GO:0043087 2 0.017
cellular macromolecular complex assembly GO:0034622 24 0.016
Yeast
tube morphogenesis GO:0035239 349 0.016
muscle structure development GO:0061061 196 0.016
embryonic cranial skeleton morphogenesis GO:0048701 90 0.016
regulation of signaling GO:0023051 235 0.016
positive regulation of transport GO:0051050 2 0.016
positive regulation of nucleoside metabolic process GO:0045979 1 0.016
negative regulation of macromolecule biosynthetic process GO:0010558 48 0.016
organophosphate biosynthetic process GO:0090407 23 0.016
collagen metabolic process GO:0032963 2 0.016
embryonic skeletal system morphogenesis GO:0048704 93 0.016
single organism intracellular transport GO:1902582 25 0.015
oxoacid metabolic process GO:0043436 31 0.015
phosphorus metabolic process GO:0006793 109 0.015
response to carbohydrate GO:0009743 3 0.015
negative regulation of cell communication GO:0010648 96 0.015
protein n linked glycosylation GO:0006487 1 0.015
negative regulation of transcription dna templated GO:0045892 45 0.015
cytoskeleton dependent cytokinesis GO:0061640 3 0.015
protein import into nucleus GO:0006606 3 0.015
nucleic acid templated transcription GO:0097659 181 0.015
positive regulation of apoptotic process GO:0043065 29 0.015
cellular response to stress GO:0033554 62 0.015
negative regulation of protein phosphorylation GO:0001933 4 0.015
ribonucleoprotein complex assembly GO:0022618 5 0.015
Yeast
spermatogenesis GO:0007283 7 0.015
purine containing compound metabolic process GO:0072521 29 0.015
blood vessel development GO:0001568 246 0.015
lymphocyte homeostasis GO:0002260 1 0.015
protein localization to plasma membrane GO:0072659 1 0.015
meiotic cell cycle process GO:1903046 3 0.015
regulation of nucleocytoplasmic transport GO:0046822 2 0.014
negative regulation of protein transport GO:0051224 3 0.014
central nervous system development GO:0007417 387 0.014
positive regulation of catabolic process GO:0009896 4 0.014
regulation of biological quality GO:0065008 263 0.014
muscle cell differentiation GO:0042692 139 0.014
positive regulation of protein complex assembly GO:0031334 2 0.014
positive regulation of cellular metabolic process GO:0031325 94 0.014
phototransduction GO:0007602 2 0.014
pore complex assembly GO:0046931 2 0.014
regulation of protein catabolic process GO:0042176 1 0.014
carboxylic acid metabolic process GO:0019752 22 0.014
positive regulation of secretion GO:0051047 1 0.014
multicellular organism reproduction GO:0032504 35 0.014
regulation of protein localization to nucleus GO:1900180 2 0.014
nucleobase containing compound catabolic process GO:0034655 15 0.013
response to cold GO:0009409 4 0.013
digestive system development GO:0055123 289 0.013
regulation of peptidyl tyrosine phosphorylation GO:0050730 1 0.013
response to glucose GO:0009749 3 0.013
regulation of cell death GO:0010941 103 0.013
mrna metabolic process GO:0016071 20 0.013
actin filament based movement GO:0030048 1 0.013
homeostasis of number of cells GO:0048872 62 0.013
positive regulation of developmental process GO:0051094 50 0.013
regulation of cellular protein catabolic process GO:1903362 1 0.013
regulation of protein targeting GO:1903533 2 0.013
regeneration GO:0031099 91 0.013
macromolecular complex assembly GO:0065003 35 0.013
Yeast
blood vessel morphogenesis GO:0048514 216 0.013
embryonic organ development GO:0048568 381 0.013
positive regulation of purine nucleotide catabolic process GO:0033123 1 0.013
organic acid metabolic process GO:0006082 31 0.013
female meiotic division GO:0007143 2 0.013
neuron development GO:0048666 262 0.013
oogenesis GO:0048477 14 0.013
purine nucleoside triphosphate biosynthetic process GO:0009145 2 0.013
positive regulation of i kappab kinase nf kappab signaling GO:0043123 3 0.012
er nucleus signaling pathway GO:0006984 2 0.012
nucleoside phosphate metabolic process GO:0006753 28 0.012
transcription dna templated GO:0006351 181 0.012
ubiquitin dependent protein catabolic process GO:0006511 3 0.012
zymogen activation GO:0031638 3 0.012
regulation of skeletal muscle fiber development GO:0048742 2 0.012
actin mediated cell contraction GO:0070252 1 0.012
anterior posterior axis specification GO:0009948 20 0.012
innate immune response GO:0045087 13 0.012
regulation of growth GO:0040008 42 0.012
negative regulation of programmed cell death GO:0043069 58 0.012
cellular response to reactive oxygen species GO:0034614 2 0.012
purine ribonucleotide metabolic process GO:0009150 27 0.012
cellular component disassembly GO:0022411 1 0.012
intracellular signal transduction GO:0035556 85 0.012
regulation of cell differentiation GO:0045595 142 0.012
regulation of oocyte development GO:0060281 3 0.011
response to oxygen containing compound GO:1901700 55 0.011
multi organism reproductive process GO:0044703 36 0.011
regulation of protein import into nucleus GO:0042306 2 0.011
microtubule cytoskeleton organization GO:0000226 33 0.011
Fly
rna biosynthetic process GO:0032774 181 0.011
purine ribonucleoside metabolic process GO:0046128 10 0.011
dna templated transcription elongation GO:0006354 3 0.011
immune system development GO:0002520 191 0.011
protein complex subunit organization GO:0071822 46 0.011
Fly
positive regulation of cellular component biogenesis GO:0044089 3 0.011
response to heat GO:0009408 6 0.011
hemopoiesis GO:0030097 183 0.011
ribonucleotide metabolic process GO:0009259 27 0.011
regulation of cellular protein metabolic process GO:0032268 52 0.011
regulation of intracellular protein transport GO:0033157 3 0.011
posttranscriptional regulation of gene expression GO:0010608 14 0.011
regulation of circadian rhythm GO:0042752 4 0.011
negative regulation of signal transduction GO:0009968 94 0.011
cellular catabolic process GO:0044248 27 0.011
positive regulation of stem cell proliferation GO:2000648 1 0.011
positive regulation of gtp catabolic process GO:0033126 1 0.011
endosomal transport GO:0016197 2 0.011
mitochondrion organization GO:0007005 4 0.011
regulation of cellular response to stress GO:0080135 20 0.011
regulation of establishment of cell polarity GO:2000114 1 0.011
positive regulation of embryonic development GO:0040019 3 0.010
negative regulation of multicellular organismal process GO:0051241 69 0.010
protein targeting to nucleus GO:0044744 3 0.010
sensory organ development GO:0007423 393 0.010
positive regulation of striated muscle tissue development GO:0045844 1 0.010
regulation of establishment or maintenance of cell polarity GO:0032878 2 0.010
protein stabilization GO:0050821 2 0.010
regulation of nucleic acid templated transcription GO:1903506 213 0.010

rpl3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
immune system disease DOID:2914 0 0.338
disease of anatomical entity DOID:7 0 0.338
hematopoietic system disease DOID:74 0 0.338
bone marrow disease DOID:4961 0 0.264
congenital hypoplastic anemia DOID:1342 0 0.085
aplastic anemia DOID:12449 0 0.085
anemia DOID:2355 0 0.085
diamond blackfan anemia DOID:1339 0 0.035
nervous system disease DOID:863 0 0.019
disease of cellular proliferation DOID:14566 0 0.011