Danio rerio

0 known processes

rbm39a

RNA binding motif protein 39a

(Aliases: zgc:55780,rnpc2)

rbm39a biological process predictions


Filter by process size:
Biological process GO term ID Process size Probability Func Analog Org
regulation of mrna splicing via spliceosome GO:0048024 3 0.519
Fly
nitrogen compound metabolic process GO:0006807 319 0.469
Fly
regulation of metabolic process GO:0019222 359 0.411
Fly
regulation of alternative mrna splicing via spliceosome GO:0000381 1 0.391
Fly
regulation of mrna processing GO:0050684 3 0.375
Fly
cellular aromatic compound metabolic process GO:0006725 295 0.339
Fly
regulation of nitrogen compound metabolic process GO:0051171 251 0.317
Fly
embryo development ending in birth or egg hatching GO:0009792 271 0.294
Worm
alternative mrna splicing via spliceosome GO:0000380 1 0.221
Fly
spliceosomal complex assembly GO:0000245 1 0.211
nucleic acid templated transcription GO:0097659 181 0.208
cellular nitrogen compound biosynthetic process GO:0044271 218 0.193
nucleobase containing compound metabolic process GO:0006139 274 0.159
Fly
cellular macromolecule metabolic process GO:0044260 391 0.155
Fly
regulation of nucleobase containing compound metabolic process GO:0019219 250 0.155
Fly
cellular biosynthetic process GO:0044249 286 0.151
lipid storage GO:0019915 1 0.150
gene expression GO:0010467 252 0.142
Fly
larval development GO:0002164 2 0.130
Worm
regulation of gene expression GO:0010468 265 0.129
Fly
maintenance of location GO:0051235 4 0.128
mrna splicing via spliceosome GO:0000398 10 0.126
Fly
organic cyclic compound biosynthetic process GO:1901362 223 0.126
regulation of biosynthetic process GO:0009889 250 0.121
mrna metabolic process GO:0016071 20 0.118
Fly
regulation of rna metabolic process GO:0051252 224 0.114
Fly
regulation of transcription dna templated GO:0006355 213 0.110
organic cyclic compound metabolic process GO:1901360 301 0.110
Fly
regulation of erk1 and erk2 cascade GO:0070372 4 0.108
Fly
rna metabolic process GO:0016070 219 0.104
Fly
biosynthetic process GO:0009058 294 0.100
regulation of cellular biosynthetic process GO:0031326 245 0.097
regulation of nucleic acid templated transcription GO:1903506 213 0.092
regulation of transcription from rna polymerase ii promoter GO:0006357 114 0.085
cellular nitrogen compound metabolic process GO:0034641 290 0.084
Fly
regulation of macromolecule biosynthetic process GO:0010556 225 0.084
transcription from rna polymerase ii promoter GO:0006366 80 0.082
heterocycle metabolic process GO:0046483 290 0.081
Fly
negative regulation of ras protein signal transduction GO:0046580 1 0.073
regulation of cellular metabolic process GO:0031323 320 0.072
Fly
amine metabolic process GO:0009308 2 0.072
cellular macromolecule biosynthetic process GO:0034645 224 0.071
regulation of protein targeting GO:1903533 2 0.071
transcription dna templated GO:0006351 181 0.071
rna splicing via transesterification reactions with bulged adenosine as nucleophile GO:0000377 10 0.067
Fly
mrna processing GO:0006397 14 0.067
Fly
regulation of macromolecule metabolic process GO:0060255 317 0.066
Fly
negative regulation of cellular process GO:0048523 283 0.066
rna biosynthetic process GO:0032774 181 0.066
heterocycle biosynthetic process GO:0018130 215 0.062
single organism metabolic process GO:0044710 217 0.061
Fly
response to stress GO:0006950 263 0.061
pigmentation GO:0043473 85 0.060
rna splicing GO:0008380 16 0.058
Fly
meiotic nuclear division GO:0007126 4 0.056
organic substance biosynthetic process GO:1901576 289 0.055
nuclear transport GO:0051169 4 0.054
nucleocytoplasmic transport GO:0006913 4 0.054
regulation of developmental process GO:0050793 247 0.054
aromatic compound biosynthetic process GO:0019438 217 0.054
nucleic acid transport GO:0050657 2 0.054
transport GO:0006810 220 0.054
erk1 and erk2 cascade GO:0070371 4 0.052
Fly
cellular ketone metabolic process GO:0042180 11 0.051
nucleic acid metabolic process GO:0090304 244 0.050
Fly
cell surface receptor signaling pathway GO:0007166 325 0.050
cellular protein metabolic process GO:0044267 129 0.050
regulation of primary metabolic process GO:0080090 311 0.049
Fly
regulation of response to stimulus GO:0048583 269 0.048
Fly
macromolecule biosynthetic process GO:0009059 227 0.048
small molecule metabolic process GO:0044281 77 0.043
negative regulation of small gtpase mediated signal transduction GO:0051058 1 0.043
single organism biosynthetic process GO:0044711 71 0.043
intracellular estrogen receptor signaling pathway GO:0030520 3 0.043
regulation of multicellular organismal process GO:0051239 277 0.042
positive regulation of dna templated transcription elongation GO:0032786 1 0.041
carbohydrate biosynthetic process GO:0016051 1 0.041
regulation of cellular ketone metabolic process GO:0010565 7 0.040
negative regulation of cell communication GO:0010648 96 0.040
regulation of biological quality GO:0065008 263 0.040
development of primary female sexual characteristics GO:0046545 4 0.040
single organism transport GO:0044765 206 0.039
nucleobase containing compound biosynthetic process GO:0034654 205 0.039
positive regulation of rna metabolic process GO:0051254 59 0.039
establishment of protein localization to organelle GO:0072594 4 0.038
regulation of photoreceptor cell differentiation GO:0046532 2 0.038
regulation of meiotic cell cycle GO:0051445 1 0.037
negative regulation of biological process GO:0048519 304 0.036
signal transduction GO:0007165 455 0.036
Fly
cognition GO:0050890 1 0.036
protein targeting to nucleus GO:0044744 3 0.036
positive regulation of biological process GO:0048518 253 0.036
Fly
nuclear export GO:0051168 1 0.036
rna splicing via transesterification reactions GO:0000375 10 0.036
Fly
establishment of rna localization GO:0051236 3 0.036
rna localization GO:0006403 4 0.036
cellular amine metabolic process GO:0044106 2 0.035
rna export from nucleus GO:0006405 1 0.035
response to chemical GO:0042221 320 0.035
regulation of cellular macromolecule biosynthetic process GO:2000112 222 0.035
transcription elongation from rna polymerase ii promoter GO:0006368 3 0.034
growth GO:0040007 174 0.033
Worm
regulation of protein import into nucleus GO:0042306 2 0.033
regulation of multicellular organismal development GO:2000026 223 0.033
regulation of cellular carbohydrate metabolic process GO:0010675 4 0.033
glucose homeostasis GO:0042593 1 0.033
negative regulation of cellular metabolic process GO:0031324 77 0.033
rna transport GO:0050658 2 0.033
regulation of rna biosynthetic process GO:2001141 213 0.033
regulation of synapse assembly GO:0051963 3 0.032
regulation of transcription elongation from rna polymerase ii promoter GO:0034243 3 0.032
dna templated transcription elongation GO:0006354 3 0.032
regulation of protein transport GO:0051223 3 0.032
mrna transport GO:0051028 2 0.031
positive regulation of cellular process GO:0048522 201 0.031
Fly
regulation of cell shape GO:0008360 1 0.030
negative regulation of multicellular organismal process GO:0051241 69 0.030
regulation of signaling GO:0023051 235 0.030
Fly
regulation of intracellular protein transport GO:0033157 3 0.030
regulation of carbohydrate metabolic process GO:0006109 4 0.030
protein acylation GO:0043543 3 0.029
regulation of protein modification by small protein conjugation or removal GO:1903320 3 0.029
developmental pigmentation GO:0048066 48 0.029
proteasome mediated ubiquitin dependent protein catabolic process GO:0043161 2 0.029
negative regulation of mrna metabolic process GO:1903312 3 0.029
locomotion GO:0040011 313 0.029
Worm
regulation of multicellular organism growth GO:0040014 4 0.028
response to abiotic stimulus GO:0009628 122 0.028
negative regulation of signal transduction GO:0009968 94 0.028
macromolecular complex subunit organization GO:0043933 74 0.028
protein polymerization GO:0051258 4 0.028
locomotor rhythm GO:0045475 3 0.028
purine nucleoside monophosphate catabolic process GO:0009128 4 0.028
negative regulation of protein localization to nucleus GO:1900181 2 0.027
cellular component assembly GO:0022607 170 0.027
digestive tract development GO:0048565 265 0.027
nuclear import GO:0051170 3 0.026
regulation of cell cycle GO:0051726 52 0.026
positive regulation of rna biosynthetic process GO:1902680 57 0.025
regulation of synaptic growth at neuromuscular junction GO:0008582 1 0.025
protein import GO:0017038 3 0.025
regulation of dna templated transcription elongation GO:0032784 3 0.025
pigment cell differentiation GO:0050931 38 0.025
regulation of establishment of protein localization GO:0070201 4 0.024
multicellular organism growth GO:0035264 4 0.024
single organism nuclear import GO:1902593 3 0.024
female gonad development GO:0008585 4 0.024
ribonucleoside monophosphate catabolic process GO:0009158 4 0.024
regulation of signal transduction GO:0009966 225 0.024
Fly
cell death GO:0008219 121 0.024
mitotic dna damage checkpoint GO:0044773 4 0.024
multi organism process GO:0051704 134 0.023
regulation of cellular amino acid metabolic process GO:0006521 0 0.023
positive regulation of nitrogen compound metabolic process GO:0051173 69 0.022
regulation of synapse organization GO:0050807 3 0.022
internal protein amino acid acetylation GO:0006475 2 0.022
modification dependent protein catabolic process GO:0019941 3 0.022
response to organic substance GO:0010033 153 0.022
peptidyl lysine acetylation GO:0018394 2 0.022
cell cycle g1 s phase transition GO:0044843 1 0.022
carboxylic acid metabolic process GO:0019752 22 0.022
cellular carbohydrate metabolic process GO:0044262 4 0.021
positive regulation of nucleobase containing compound metabolic process GO:0045935 69 0.021
regulation of cellular amine metabolic process GO:0033238 0 0.021
regulation of protein localization to nucleus GO:1900180 2 0.021
organelle organization GO:0006996 227 0.021
ubiquitin dependent protein catabolic process GO:0006511 3 0.021
signal transduction by p53 class mediator GO:0072331 13 0.021
cellular component disassembly GO:0022411 1 0.021
regulation of growth rate GO:0040009 1 0.021
programmed cell death GO:0012501 119 0.021
positive regulation of biosynthetic process GO:0009891 68 0.020
small gtpase mediated signal transduction GO:0007264 8 0.020
Fly
female sex differentiation GO:0046660 4 0.020
cellular localization GO:0051641 97 0.020
internal peptidyl lysine acetylation GO:0018393 2 0.020
cellular component morphogenesis GO:0032989 336 0.020
regulation of binding GO:0051098 3 0.020
intracellular signal transduction GO:0035556 85 0.020
Fly
cellular response to stress GO:0033554 62 0.019
nucleoside monophosphate catabolic process GO:0009125 4 0.019
atp catabolic process GO:0006200 4 0.019
organic acid metabolic process GO:0006082 31 0.019
negative regulation of response to stimulus GO:0048585 104 0.019
positive regulation of gene expression GO:0010628 71 0.019
negative regulation of developmental process GO:0051093 65 0.019
cellular response to extracellular stimulus GO:0031668 2 0.019
negative regulation of nucleocytoplasmic transport GO:0046823 2 0.019
cellular protein catabolic process GO:0044257 4 0.019
modification dependent macromolecule catabolic process GO:0043632 3 0.018
positive regulation of nucleic acid templated transcription GO:1903508 57 0.018
phosphorus metabolic process GO:0006793 109 0.018
Fly
interspecies interaction between organisms GO:0044419 4 0.018
positive regulation of cellular component biogenesis GO:0044089 3 0.018
positive regulation of catabolic process GO:0009896 4 0.018
regulation of stem cell proliferation GO:0072091 2 0.018
cellular amino acid metabolic process GO:0006520 7 0.018
regulation of reproductive process GO:2000241 4 0.018
digestive system development GO:0055123 289 0.018
regulation of tube size GO:0035150 2 0.018
proteolysis involved in cellular protein catabolic process GO:0051603 3 0.018
apoptotic process GO:0006915 116 0.017
negative regulation of cytoplasmic transport GO:1903650 2 0.017
intrinsic apoptotic signaling pathway by p53 class mediator GO:0072332 9 0.017
intracellular transport GO:0046907 32 0.017
meiotic chromosome segregation GO:0045132 3 0.017
negative regulation of gene expression GO:0010629 65 0.017
single organism localization GO:1902578 225 0.017
symbiosis encompassing mutualism through parasitism GO:0044403 4 0.017
spindle assembly GO:0051225 2 0.017
organonitrogen compound metabolic process GO:1901564 74 0.017
regulation of cytokine production GO:0001817 3 0.017
rna processing GO:0006396 25 0.017
Fly
mrna export from nucleus GO:0006406 1 0.017
hormone secretion GO:0046879 2 0.017
synaptic growth at neuromuscular junction GO:0051124 2 0.017
cellular response to starvation GO:0009267 1 0.016
hormone transport GO:0009914 2 0.016
positive regulation of transcription dna templated GO:0045893 57 0.016
cell morphogenesis GO:0000902 289 0.016
cell projection organization GO:0030030 284 0.016
regulation of cytoplasmic transport GO:1903649 4 0.016
negative regulation of metabolic process GO:0009892 86 0.016
regionalization GO:0003002 274 0.016
sister chromatid cohesion GO:0007062 2 0.016
lymphocyte proliferation GO:0046651 1 0.016
regulation of cell differentiation GO:0045595 142 0.016
g protein coupled receptor signaling pathway GO:0007186 74 0.016
primary neural tube formation GO:0014020 1 0.016
cell part morphogenesis GO:0032990 246 0.016
neuron differentiation GO:0030182 353 0.016
positive regulation of synapse assembly GO:0051965 1 0.016
proteasomal protein catabolic process GO:0010498 2 0.016
positive regulation of cellular biosynthetic process GO:0031328 68 0.016
positive regulation of stem cell proliferation GO:2000648 1 0.016
regulation of nucleocytoplasmic transport GO:0046822 2 0.016
positive regulation of cellular catabolic process GO:0031331 3 0.016
positive regulation of protein complex assembly GO:0031334 2 0.016
negative regulation of mapk cascade GO:0043409 4 0.015
meiotic cell cycle process GO:1903046 3 0.015
positive regulation of cell cycle GO:0045787 3 0.015
macromolecule modification GO:0043412 111 0.015
positive regulation of myeloid cell differentiation GO:0045639 2 0.015
macromolecular complex assembly GO:0065003 35 0.015
negative regulation of rna splicing GO:0033119 1 0.015
epithelial cell differentiation GO:0030855 116 0.015
positive regulation of metabolic process GO:0009893 108 0.015
Fly
positive regulation of neuron death GO:1901216 1 0.015
regulation of inflammatory response GO:0050727 2 0.015
negative regulation of synapse assembly GO:0051964 2 0.015
positive regulation of cell activation GO:0050867 1 0.015
skeletal muscle organ development GO:0060538 78 0.015
positive regulation of transport GO:0051050 2 0.015
negative regulation of mrna processing GO:0050686 1 0.014
positive regulation of epithelial cell proliferation GO:0050679 1 0.014
cellular macromolecular complex assembly GO:0034622 24 0.014
ovulation cycle process GO:0022602 2 0.014
gtp catabolic process GO:0006184 2 0.014
alcohol biosynthetic process GO:0046165 2 0.014
meiosis i GO:0007127 1 0.014
positive regulation of secretion by cell GO:1903532 1 0.014
tube closure GO:0060606 1 0.014
regulation of cell activation GO:0050865 1 0.014
regulation of reactive oxygen species metabolic process GO:2000377 2 0.014
macromolecular complex disassembly GO:0032984 1 0.014
cellular component biogenesis GO:0044085 178 0.014
regulation of response to biotic stimulus GO:0002831 2 0.014
regulation of circadian rhythm GO:0042752 4 0.014
gene silencing by rna GO:0031047 4 0.014
positive regulation of leukocyte differentiation GO:1902107 1 0.014
negative regulation of intracellular transport GO:0032387 3 0.014
regulation of hormone secretion GO:0046883 2 0.014
hematopoietic or lymphoid organ development GO:0048534 191 0.014
regulation of response to stress GO:0080134 36 0.013
regulation of intracellular signal transduction GO:1902531 57 0.013
Fly
circadian sleep wake cycle sleep GO:0050802 1 0.013
response to uv GO:0009411 3 0.013
regulation of protein ubiquitination GO:0031396 3 0.013
male meiosis GO:0007140 2 0.013
negative regulation of macromolecule metabolic process GO:0010605 76 0.013
regulation of cell communication GO:0010646 232 0.013
Fly
regulation of peptidyl tyrosine phosphorylation GO:0050730 1 0.013
mitochondrion organization GO:0007005 4 0.013
ovulation cycle GO:0042698 2 0.013
cytokinesis GO:0000910 3 0.013
sensory organ development GO:0007423 393 0.013
carbohydrate homeostasis GO:0033500 1 0.013
peptidyl threonine phosphorylation GO:0018107 1 0.013
homeostatic process GO:0042592 142 0.013
stem cell proliferation GO:0072089 4 0.013
protein acetylation GO:0006473 2 0.013
ribosomal small subunit biogenesis GO:0042274 2 0.013
regulation of protein catabolic process GO:0042176 1 0.013
negative regulation of embryonic development GO:0045992 11 0.013
cell morphogenesis involved in differentiation GO:0000904 195 0.013
negative regulation of cellular biosynthetic process GO:0031327 55 0.013
negative regulation of cellular macromolecule biosynthetic process GO:2000113 48 0.013
negative regulation of secretion GO:0051048 2 0.013
chromatin organization GO:0006325 22 0.013
multi organism cellular process GO:0044764 2 0.013
mesenchymal cell development GO:0014031 78 0.013
regulation of carbohydrate biosynthetic process GO:0043255 1 0.013
organic substance transport GO:0071702 58 0.012
response to glucose GO:0009749 3 0.012
neuroblast proliferation GO:0007405 2 0.012
mitotic dna integrity checkpoint GO:0044774 4 0.012
endocrine hormone secretion GO:0060986 2 0.012
skin development GO:0043588 54 0.012
positive regulation of secretion GO:0051047 1 0.012
regulation of cell death GO:0010941 103 0.012
regulation of embryonic development GO:0045995 47 0.012
response to topologically incorrect protein GO:0035966 2 0.012
muscle organ development GO:0007517 101 0.012
purine ribonucleoside monophosphate catabolic process GO:0009169 4 0.012
peptide transport GO:0015833 1 0.012
peptidyl threonine modification GO:0018210 1 0.012
positive regulation of macromolecule biosynthetic process GO:0010557 59 0.012
blood vessel morphogenesis GO:0048514 216 0.012
g2 dna damage checkpoint GO:0031572 3 0.012
intracellular receptor signaling pathway GO:0030522 30 0.012
circadian sleep wake cycle GO:0042745 2 0.012
establishment of localization GO:0051234 244 0.012
oxoacid metabolic process GO:0043436 31 0.012
neurotransmitter transport GO:0006836 2 0.012
tissue remodeling GO:0048771 4 0.012
skeletal muscle tissue development GO:0007519 67 0.012
adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains GO:0002460 4 0.012
positive regulation of erk1 and erk2 cascade GO:0070374 2 0.012
Fly
regulation of transcription from rna polymerase ii promoter in response to stress GO:0043618 0 0.012
negative regulation of rna metabolic process GO:0051253 48 0.012
i kappab kinase nf kappab signaling GO:0007249 4 0.012
phosphorylation GO:0016310 69 0.012
Fly
single organism organelle organization GO:1902589 199 0.012
positive regulation of transcription elongation from rna polymerase ii promoter GO:0032968 1 0.011
response to hexose GO:0009746 3 0.011
negative regulation of defense response GO:0031348 2 0.011
centrosome organization GO:0051297 1 0.011
nuclear transcribed mrna catabolic process nonsense mediated decay GO:0000184 4 0.011
mesoderm development GO:0007498 88 0.011
phagocytosis GO:0006909 3 0.011
mononuclear cell proliferation GO:0032943 1 0.011
regulation of dna replication GO:0006275 3 0.011
organonitrogen compound biosynthetic process GO:1901566 47 0.011
regulation of protein complex disassembly GO:0043244 1 0.011
regulation of nervous system development GO:0051960 90 0.011
regulation of wound healing GO:0061041 2 0.011
negative regulation of catabolic process GO:0009895 3 0.011
camera type eye development GO:0043010 222 0.011
anion transport GO:0006820 38 0.011
cellular response to external stimulus GO:0071496 2 0.011
pancreas development GO:0031016 84 0.011
regulation of mesoderm development GO:2000380 11 0.011
microtubule polymerization GO:0046785 2 0.011
anterior posterior pattern specification GO:0009952 152 0.011
spindle assembly involved in mitosis GO:0090307 1 0.011
synapse organization GO:0050808 21 0.011
immunoglobulin mediated immune response GO:0016064 3 0.011
regulation of programmed cell death GO:0043067 101 0.011
negative regulation of multi organism process GO:0043901 3 0.011
aging GO:0007568 2 0.011
Worm
regulation of protein complex assembly GO:0043254 3 0.011
protein metabolic process GO:0019538 183 0.011
regulation of signal transduction by p53 class mediator GO:1901796 9 0.011
negative regulation of nitrogen compound metabolic process GO:0051172 59 0.010
positive regulation of cellular amino acid metabolic process GO:0045764 0 0.010
negative regulation of rna biosynthetic process GO:1902679 45 0.010
regulation of epithelial cell proliferation GO:0050678 3 0.010
protein localization to nucleus GO:0034504 3 0.010
nucleobase containing compound transport GO:0015931 2 0.010
neuronal stem cell maintenance GO:0097150 2 0.010
response to biotic stimulus GO:0009607 97 0.010
positive regulation of cellular amine metabolic process GO:0033240 0 0.010
extrinsic apoptotic signaling pathway in absence of ligand GO:0097192 1 0.010
muscle structure development GO:0061061 196 0.010
cellular biogenic amine metabolic process GO:0006576 2 0.010
reproductive process GO:0022414 40 0.010
Worm
guanosine containing compound metabolic process GO:1901068 4 0.010
regulation of lipid transport GO:0032368 4 0.010

rbm39a disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

Disease DO term ID Size Probability Func Analog Org
disease of anatomical entity DOID:7 0 0.031
nervous system disease DOID:863 0 0.017
musculoskeletal system disease DOID:17 0 0.013
sensory system disease DOID:0050155 0 0.011